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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G67530 | AT | Annotation by Michelle Graham. TAIR10: plant U-box 49 | chr5:26941260-26943878 FORWARD LENGTH=595 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0000151 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003755 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| KOG0883 | KOG | Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase | JGI | ISS | |
| PTHR11071 | Panther | CYCLOPHILIN | JGI | ISS | |
| PTHR11071:SF87 | Panther | JGI | ISS | ||
| PF00160 | PFAM | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | JGI | ISS | |
| PF04564 | PFAM | U-box domain | JGI | ISS | |
| UniRef100_G7K2I6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase-like protein n=1 Tax=Medicago truncatula RepID=G7K2I6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J9E6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9E6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g40170 not represented in the dataset |
Glyma01g40170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g05130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g194100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g40170.1 sequence type=CDS gene model=Glyma01g40170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAAGAAGCAGCACAGCAAAGACAGAATGTTCATCACCAAAACGGAGTGGGCAACGGAGTGGGGAGGCGCTAAATCCAAAGAAAATCGCACTCCCTTCAAACGTCTTCCCTTCTATTGCTGCTCGCTTACGTTTACGCCGTTTGAAGAACCGGTCTGCACACCTGATGGCAGTGTTTTCGATAATATGAATATAACTCCCTATATTGTAAAATATGGCAAACATCCAGTCAATGGAGCTCCTCTCAAGCATCAGGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAGGAGAATATCATTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACACATATTGTGGCAGTGAAGACCACAGGAAACGTGTTCTGCTATGAGGCTGTTAAAGAGTTAAACATTAAGACAAAAAACTGGAAGGAGCTCCTCACTGATGAGCCATTCACTAAGGATGACCTTATAACCATTCAAAATCCTAATGCACTTGACAGCAAGGTTCTTCTGGATTTTGATCATGTTAAAAATAGTTTGAAAGTTGATGATGAAGAACTACAGAAAATGAGTTCAGATCCAACCTATAATATAAACATGTCGGGTGATATAAAGCAAATGCTTAAGGAGCTTGGAACTGAGAAAGGGAAGGAAACTGCATTGCATGGGGGAGGCGGTGGCAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCTGCCATCTTAGCTGCAAGGTCACGTGTTGAAGAAGATTCCAAATCAAATCCAAATAAAGAGGCCAAAGCTCCTCAGGCATTTAGTGTTGTTGATGCTGCATCTGCTTCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCAGCAGGTGATAAAACTGCAGCTAGAATAGCTATGCATGTGGCTGGTGACAGGGCACCAGTGAATGCAAAGATGGTAAAAAGCCGTTTCACGACTGGTGCTGCTTCCCGGTCTTTCACTTCAACATCATTTGATCCAGTTACAAAAAATGAATTTGAGTATGTGAAAGTTGAGAAGAATCCAAAAAAGAAGGGATATGTACAACTGCATACAACACATGGTGATTTGAACATTGAGCTGCATTGTGATATAACCCCCAGGGCATGCGAGAACTTCATCACTCTTTGTGAACGTGGATATTATAATGGAGTTGCTTTTCATAGAAACATTAGGAATTTTATGATACAGGGCGGTGATCCTACTGGTACCGGTCGAGGAGGTGAATCTATATGGGGAAAGCCTTTTAAAGATGAACTCAACTCCAAATTAATTCACTCCGGAAGGGGTGTGGTAAGCATGGCAAACAGTGGCCCACACACTAATGGTTCCCAGTTTTTCATCTTGTACAAGTCTGCAAATCATCTAAACTTCAAACATACAGTTTTTGGAGGAGTTGTGGGTGGCTTGACTACCCTAGCGGCAATGGAAAAGGTTCCTGTTGATGATGATGACCGGCCTCTGGAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACAGAACCAGATGAGGGAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAATGATAAGGTAGGCTCATGGTATAGCAATCCTGGCGCTGCAACGTCTGTTTCTGGAGGTACGGGGGCTGGTGGTGGCGTTGGCAAGTACTTAAAAGCTAGGAGCACTCAAGCTAAATCTGCTACTGTTGACAACACCGGTACAGACGTTGTAGTAAAGAAAAGAAAAGTGGGAGTTGCCAGCAGTGAATTTAAAGATTTTTCTGCATGGTAA
>Glyma01g40170.1 sequence type=predicted peptide gene model=Glyma01g40170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKKQHSKDRMFITKTEWATEWGGAKSKENRTPFKRLPFYCCSLTFTPFEEPVCTPDGSVFDNMNITPYIVKYGKHPVNGAPLKHQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDSKVLLDFDHVKNSLKVDDEELQKMSSDPTYNINMSGDIKQMLKELGTEKGKETALHGGGGGKAQKERAAALAAILAARSRVEEDSKSNPNKEAKAPQAFSVVDAASASVHGRSAAAAKASAGDKTAARIAMHVAGDRAPVNAKMVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDDDRPLEEIKITSVTIFVNPYTEPDEGEEQDNAKEKNAEDEDNDKVGSWYSNPGAATSVSGGTGAGGGVGKYLKARSTQAKSATVDNTGTDVVVKKRKVGVASSEFKDFSAW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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