Glyma01g40090 - SoyBase

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Report for Sequence Feature Glyma01g40090

Feature Type:	gene_model
Chromosome:	Gm01
Start:	51899587
stop:	51905304
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g40090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67480	AT	Annotation by Michelle Graham. TAIR10: BTB and TAZ domain protein 4 \| chr5:26931055-26932529 REVERSE LENGTH=383	SoyBase	E_val: 5.00E-160	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009954	GO-bp	Annotation by Michelle Graham. GO Biological Process: proximal/distal pattern formation	SoyBase	N/A	ISS
GO:0010227	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ abscission	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0048439	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower morphogenesis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0003712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription cofactor activity	SoyBase	N/A	ISS
GO:0004402	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone acetyltransferase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1778	KOG	CREB binding protein/P300 and related TAZ Zn-finger proteins	JGI		ISS
PTHR24413	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24413:SF191	Panther		JGI		ISS
PF00651	PFAM	BTB/POZ domain	JGI		ISS
PF02135	PFAM	TAZ zinc finger	JGI		ISS
UniRef100_G7K3T4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Speckle-type POZ protein-like B n=1 Tax=Medicago truncatula RepID=G7K3T4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J9D8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9D8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g40090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g40090 not represented in the dataset	Glyma01g40090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g40090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g193300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g40090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g40090

Limit To All Plant Sequences

>Glyma01g40090.2   sequence type=transcript   gene model=Glyma01g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAGCGTACGTGTCATATTAGGGTGTACACAATTTCTGTTGTTGATATTTTTAGTTAAGAACAAGAGTGACAGATAGACTTGGTGAATTTTATTTTTAGCTTATTTGTTTCCTTTTTCATGAAAATCTATGCAGTTTCACAAATAGGCTCTGGTAATTGATCATCCTCGTTGTGTCTCTCCCTTTCTCCTTTGCATCACCATGTGTTCCCATTTCTGATTTTGTTATCCAGAAGGTGATGTCAAATTGAGAAAATAGAGTTCGACCTCAACCACTTATTATAATTCTTAGTTGAGATTTAGGTTTCGGAGGAAATATTGATTCTGGTTCCATATATTTGCTTCTGTCTTCTTGTTTATTTTTTAAAAGAATTTTGAGAGGAAGGCTTCAAAGTTTACATCAGAGAAGCATAAAGCGATGACTAGCATGGGCGAGAATTGTTTTAAGCCTCTCCAAAATACTAAGAAAATAACTCCGATGCCACCTCCCATGCCCCGTTTTGCAGCCACGAGTTGTCCTTGTAAGTGTTTGGTGTCAAAAAATTCAACACCACCAAGAGGGCGCAACAATAATGTCTCTCCAGCAGCAATAGAATTTTGGGAGCGTCTTTTTTATCAAGGCCATGTCTACTCCTGTTTTCAGGGGCATGTTGAAGCAAGCAAATTGTCATCGTCGATGGCGAACAATCTCAATTACTGGGGTTCCACATGATGCAGTTCAAGTTTTTATTCGATTCTTATACACTTCCAGTTATGAGAAAGAAGAAATGGATGAATTCGTCCTACCTTTGTTGGTGTTGTCACATGTATACGTCGTCCCTCACTTGAAGCGTGAATGTGAACAGAAGTTAGAACTGAGTTTACTCACCATAGATAATGTGGTGGATGTATTTCAACTTGCCCTACTTTGTGATGCACCAAGACTTAGCCTTATTTGTCACCGAAAGGTGCTGAAAAACTTCAAAGTTGTTTCAGAAACAGAAGGATGGAAAACAATGAAGTTGAGCCACCCAGCTCTAGAAAAGGAAATTGTCGAGTCAATGGTCGATGAAGACATTATTAAAAAGGAGAAAATCAGAAAAAATAAGGAAAGAGAGATATATTTGCAATTATACGAGGCCATGGAAGCCCTTGTTCACATTTGTAGAGATGGTTGTCGAACTATTGGTCCTCACGACAAAGACTTCAAAGCAAACCAACCATGTAAGTATACAGCATGCAACGGATTAGAATTGCTTGTTCGTCATTTTGCTGGATGCAAGTTGAGAGTCCGTGGAGGTTGTGTTCATTGCAACAGGATGTGGCAATTATTGGAGTTACACTCTCGATTATGTGTTGATCCTGATTACTGTAGAGTTCCTTTGTGCAGGAACTTTAAAGAGCGAATATCAAAACAAAACAAGAAAGACGAAATTAGGTGGAAAATATTGGTTCAAAAGATCTTGAGAACAAGAGGAATTGGGATAGCATCATGCTTTCTGCCACAATAACTATGGCCATCTGGTGGGTATATAGAATGTGTTTGTAAGAAATGGCCTTCAAAGATTAAGTGTTTCTCGTCTCAACCTTATTGATGAAATAAATAAGAAGCAGGGGAACACTTTTTTCTAATATTTTTATCTTATTTTTTTAACCATAAAATTATTTGTATGTCTAAAGATCTGGACATTAATTTATATCTTGTATTCAATAATAGTTATTTAGTTAGTATACCAAATGGTCTTAAGTAATAAAATTTATGTGAAGAATGCCATAAGGTATTAAGATTCAAAGTACTAATTTAAAAATATATCTTTACTGGACTTAAACTTTTAAAGAATGAGGT

>Glyma01g40090.3   sequence type=transcript   gene model=Glyma01g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAGCGTACGTGTCATATTAGGGTGTACACAATTTCTGTTGTTGATATTTTTAGTTAAGAACAAGAGTGACAGATAGACTTGGTGAATTTTATTTTTAGCTTATTTGTTTCCTTTTTCATGAAAATCTATGCAGTTTCACAAATAGGCTCTGGTAATTGATCATCCTCGTTGTGTCTCTCCCTTTCTCCTTTGCATCACCATGTGTTCCCATTTCTGATTTTGTTATCCAGAAGGTGATGTCAAATTGAGAAAATAGAGTTCGACCTCAACCACTTATTATAATTCTTAGTTGAGATTTAGGTTTCGGAGGAAATATTGATTCTGGTTCCATATATTTGCTTCTGTCTTCTTGTTTATTTTTTAAAAGAATTTTGAGAGGAAGGCTTCAAAGTTTACATCAGGCCATGTCTACTCCTGTTTTCAGGGGCATGTTGAAGCAAGCAAATTGTCATCGTCGATGGCGAACAATCTCAATTACTGGGGTTCCACATGATGCAGTTCAAGTTTTTATTCGATTCTTATACACTTCCAGTTATGAGAAAGAAGAAATGGATGAATTCGTCCTACCTTTGTTGGTGTTGTCACATGTATACGTCGTCCCTCACTTGAAGCGTGAATGTGAACAGAAGTTAGAACTGAGTTTACTCACCATAGATAATGTGGTGGATGTATTTCAACTTGCCCTACTTTGTGATGCACCAAGACTTAGCCTTATTTGTCACCGAAAGGTGCTGAAAAACTTCAAAGTTGTTTCAGAAACAGAAGGATGGAAAACAATGAAGTTGAGCCACCCAGCTCTAGAAAAGGAAATTGTCGAGTCAATGGTCGATGAAGACATTATTAAAAAGGAGAAAATCAGAAAAAATAAGGAAAGAGAGATATATTTGCAATTATACGAGGCCATGGAAGCCCTTGTTCACATTTGTAGAGATGGTTGTCGAACTATTGGTCCTCACGACAAAGACTTCAAAGCAAACCAACCATGTAAGTATACAGCATGCAACGGATTAGAATTGCTTGTTCGTCATTTTGCTGGATGCAAGTTGAGAGTCCGTGGAGGTTGTGTTCATTGCAACAGGATGTGGCAATTATTGGAGTTACACTCTCGATTATGTGTTGATCCTGATTACTGTAGAGTTCCTTTGTGCAGGAACTTTAAAGAGCGAATATCAAAACAAAACAAGAAAGACGAAATTAGGTGGAAAATATTGGTTCAAAAGATCTTGAGAACAAGAGGAATTGGGATAGCATCATGCTTTCTGCCACAATAACTATGGCCATCTGGTGGGTATATAGAATGTGTTTGTAAGAAATGGCCTTCAAAGATTAAGTGTTTCTCGTCTCAACCTTATTGATGAAATAAATAAGAAGCAGGGGAACACTTTTTTCTAATATTTTTATCTTATTTTTTTAACCATAAAATTATTTGTATGTCTAAAGATCTGGACATTAATTTATATCTTGTATTCAATAATAGTTATTTAGTTAGTATACCAAATGGTCTTAAGTAATAAAATTTATGTGAAGAATGCCATAAGGTATTAAGATTCAAAGTACTAATTTAAAAATATATCTTTACTGGACTTAAACTTTTAAAGAATGAGGT

Coding sequences of Glyma01g40090

Limit To All Plant Sequences

>Glyma01g40090.1   sequence type=CDS   gene model=Glyma01g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAGCATGGGCGAGAATTGTTTTAAGCCTCTCCAAAATACTAAGAAAATAACTCCGATGCCACCTCCCATGCCCCGTTTTGCAGCCACGAGTTGTCCTTGTAAGTGTTTGGTGTCAAAAAATTCAACACCACCAAGAGGGCGCAACAATAATGTCTCTCCAGCAGCAATAGAATTTTGGGAGCGTCTTTTTTATCAAGGTTATAAAGCAGATGTTTGCATTAATACTGATAACGGTGGCGTTGTTTATGCTCATTCTAACATTCTTGCCATGTCTACTCCTGTTTTCAGGGGCATGTTGAAGCAAGCAAATTGTCATCGTCGATGGCGAACAATCTCAATTACTGGGGTTCCACATGATGCAGTTCAAGTTTTTATTCGATTCTTATACACTTCCAGTTATGAGAAAGAAGAAATGGATGAATTCGTCCTACCTTTGTTGGTGTTGTCACATGTATACGTCGTCCCTCACTTGAAGCGTGAATGTGAACAGAAGTTAGAACTGAGTTTACTCACCATAGATAATGTGGTGGATGTATTTCAACTTGCCCTACTTTGTGATGCACCAAGACTTAGCCTTATTTGTCACCGAAAGGTGCTGAAAAACTTCAAAGTTGTTTCAGAAACAGAAGGATGGAAAACAATGAAGTTGAGCCACCCAGCTCTAGAAAAGGAAATTGTCGAGTCAATGGTCGATGAAGACATTATTAAAAAGGAGAAAATCAGAAAAAATAAGGAAAGAGAGATATATTTGCAATTATACGAGGCCATGGAAGCCCTTGTTCACATTTGTAGAGATGGTTGTCGAACTATTGGTCCTCACGACAAAGACTTCAAAGCAAACCAACCATGTAAGTATACAGCATGCAACGGATTAGAATTGCTTGTTCGTCATTTTGCTGGATGCAAGTTGAGAGTCCGTGGAGGTTGTGTTCATTGCAACAGGATGTGGCAATTATTGGAGTTACACTCTCGATTATGTGTTGATCCTGATTACTGTAGAGTTCCTTTGTGCAGGAACTTTAAAGAGCGAATATCAAAACAAAACAAGAAAGACGAAATTAGGTGGAAAATATTGGTTCAAAAGATCTTGAGAACAAGAGGAATTGGGATAGCATCATGCTTTCTGCCACAATAA

>Glyma01g40090.2   sequence type=CDS   gene model=Glyma01g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTACTCCTGTTTTCAGGGGCATGTTGAAGCAAGCAAATTGTCATCGTCGATGGCGAACAATCTCAATTACTGGGGTTCCACATGATGCAGTTCAAGTTTTTATTCGATTCTTATACACTTCCAGTTATGAGAAAGAAGAAATGGATGAATTCGTCCTACCTTTGTTGGTGTTGTCACATGTATACGTCGTCCCTCACTTGAAGCGTGAATGTGAACAGAAGTTAGAACTGAGTTTACTCACCATAGATAATGTGGTGGATGTATTTCAACTTGCCCTACTTTGTGATGCACCAAGACTTAGCCTTATTTGTCACCGAAAGGTGCTGAAAAACTTCAAAGTTGTTTCAGAAACAGAAGGATGGAAAACAATGAAGTTGAGCCACCCAGCTCTAGAAAAGGAAATTGTCGAGTCAATGGTCGATGAAGACATTATTAAAAAGGAGAAAATCAGAAAAAATAAGGAAAGAGAGATATATTTGCAATTATACGAGGCCATGGAAGCCCTTGTTCACATTTGTAGAGATGGTTGTCGAACTATTGGTCCTCACGACAAAGACTTCAAAGCAAACCAACCATGTAAGTATACAGCATGCAACGGATTAGAATTGCTTGTTCGTCATTTTGCTGGATGCAAGTTGAGAGTCCGTGGAGGTTGTGTTCATTGCAACAGGATGTGGCAATTATTGGAGTTACACTCTCGATTATGTGTTGATCCTGATTACTGTAGAGTTCCTTTGTGCAGGAACTTTAAAGAGCGAATATCAAAACAAAACAAGAAAGACGAAATTAGGTGGAAAATATTGGTTCAAAAGATCTTGAGAACAAGAGGAATTGGGATAGCATCATGCTTTCTGCCACAATAA

>Glyma01g40090.3   sequence type=CDS   gene model=Glyma01g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTACTCCTGTTTTCAGGGGCATGTTGAAGCAAGCAAATTGTCATCGTCGATGGCGAACAATCTCAATTACTGGGGTTCCACATGATGCAGTTCAAGTTTTTATTCGATTCTTATACACTTCCAGTTATGAGAAAGAAGAAATGGATGAATTCGTCCTACCTTTGTTGGTGTTGTCACATGTATACGTCGTCCCTCACTTGAAGCGTGAATGTGAACAGAAGTTAGAACTGAGTTTACTCACCATAGATAATGTGGTGGATGTATTTCAACTTGCCCTACTTTGTGATGCACCAAGACTTAGCCTTATTTGTCACCGAAAGGTGCTGAAAAACTTCAAAGTTGTTTCAGAAACAGAAGGATGGAAAACAATGAAGTTGAGCCACCCAGCTCTAGAAAAGGAAATTGTCGAGTCAATGGTCGATGAAGACATTATTAAAAAGGAGAAAATCAGAAAAAATAAGGAAAGAGAGATATATTTGCAATTATACGAGGCCATGGAAGCCCTTGTTCACATTTGTAGAGATGGTTGTCGAACTATTGGTCCTCACGACAAAGACTTCAAAGCAAACCAACCATGTAAGTATACAGCATGCAACGGATTAGAATTGCTTGTTCGTCATTTTGCTGGATGCAAGTTGAGAGTCCGTGGAGGTTGTGTTCATTGCAACAGGATGTGGCAATTATTGGAGTTACACTCTCGATTATGTGTTGATCCTGATTACTGTAGAGTTCCTTTGTGCAGGAACTTTAAAGAGCGAATATCAAAACAAAACAAGAAAGACGAAATTAGGTGGAAAATATTGGTTCAAAAGATCTTGAGAACAAGAGGAATTGGGATAGCATCATGCTTTCTGCCACAATAA

Predicted protein sequences of Glyma01g40090

Limit To All Plant Sequences

>Glyma01g40090.1   sequence type=predicted peptide   gene model=Glyma01g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSMGENCFKPLQNTKKITPMPPPMPRFAATSCPCKCLVSKNSTPPRGRNNNVSPAAIEFWERLFYQGYKADVCINTDNGGVVYAHSNILAMSTPVFRGMLKQANCHRRWRTISITGVPHDAVQVFIRFLYTSSYEKEEMDEFVLPLLVLSHVYVVPHLKRECEQKLELSLLTIDNVVDVFQLALLCDAPRLSLICHRKVLKNFKVVSETEGWKTMKLSHPALEKEIVESMVDEDIIKKEKIRKNKEREIYLQLYEAMEALVHICRDGCRTIGPHDKDFKANQPCKYTACNGLELLVRHFAGCKLRVRGGCVHCNRMWQLLELHSRLCVDPDYCRVPLCRNFKERISKQNKKDEIRWKILVQKILRTRGIGIASCFLPQ*

>Glyma01g40090.2   sequence type=predicted peptide   gene model=Glyma01g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTPVFRGMLKQANCHRRWRTISITGVPHDAVQVFIRFLYTSSYEKEEMDEFVLPLLVLSHVYVVPHLKRECEQKLELSLLTIDNVVDVFQLALLCDAPRLSLICHRKVLKNFKVVSETEGWKTMKLSHPALEKEIVESMVDEDIIKKEKIRKNKEREIYLQLYEAMEALVHICRDGCRTIGPHDKDFKANQPCKYTACNGLELLVRHFAGCKLRVRGGCVHCNRMWQLLELHSRLCVDPDYCRVPLCRNFKERISKQNKKDEIRWKILVQKILRTRGIGIASCFLPQ*

>Glyma01g40090.3   sequence type=predicted peptide   gene model=Glyma01g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTPVFRGMLKQANCHRRWRTISITGVPHDAVQVFIRFLYTSSYEKEEMDEFVLPLLVLSHVYVVPHLKRECEQKLELSLLTIDNVVDVFQLALLCDAPRLSLICHRKVLKNFKVVSETEGWKTMKLSHPALEKEIVESMVDEDIIKKEKIRKNKEREIYLQLYEAMEALVHICRDGCRTIGPHDKDFKANQPCKYTACNGLELLVRHFAGCKLRVRGGCVHCNRMWQLLELHSRLCVDPDYCRVPLCRNFKERISKQNKKDEIRWKILVQKILRTRGIGIASCFLPQ*

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