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Report for Sequence Feature Glyma01g39920
Feature Type: gene_model
Chromosome: Gm01
Start: 51750716
stop: 51754579
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g39920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G24230 AT
Annotation by Michelle Graham. TAIR10: acyl-CoA-binding domain 3 | chr4:12567122-12568754 REVERSE LENGTH=366
SoyBase E_val: 3.00E-31 ISS
GO:0006952 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response
SoyBase N/A ISS
GO:0009617 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to bacterium
SoyBase N/A ISS
GO:0009646 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to absence of light
SoyBase N/A ISS
GO:0015908 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid transport
SoyBase N/A ISS
GO:0042742 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to bacterium
SoyBase N/A ISS
GO:0050832 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to fungus
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005615 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular space
SoyBase N/A ISS
GO:0000062 GO-mf
Annotation by Michelle Graham. GO Molecular Function: fatty-acyl-CoA binding
SoyBase N/A ISS
PTHR23310 Panther
ACYL-COA-BINDING PROTEIN, ACBP
JGI ISS
PTHR23310:SF14 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00887 PFAM
Acyl CoA binding protein
JGI ISS
UniRef100_E2IFU9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Acyl-CoA-binding protein n=1 Tax=Vitis vinifera RepID=E2IFU9_VITVI
SoyBase E_val: 4.00E-36 ISS
UniRef100_I1J9C7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9C7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g39920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g39920
Paralog Evidence Comments
Glyma11g05360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g39920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g191900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g39920
Transcripts of Glyma01g39920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g39920.2 sequence type=transcript gene model=Glyma01g39920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTCTAAGTTCCTCGCCCCGGAGCTATTCGGGGTGGTGGAGGAGTCATTTTCCAACACCGACATGTATATGGCTTGAGTAAAACATTTACATGTTGCCACACCTAACATAAGTATGATATACAAATGAGAATATACCTTGCTCTTCTATGCTAAATCCACTTTCTTCCTATTGGTAACGTTATCATCAGAAAATAGTCTCTGACTTTGGTCCTCCCACTCACACACATACAAACTCAAATTCTTTAATTCTCTCTCCATTGGCAAGTCATGGAGCTCCTATGGGAGCTTGCCTTCACCATAGCTCTTTCTCTTTTACTTCCATTGGTTTTCCTCAAACTCCTTTCCGTGACCCCAAACTTCGAAGCAAATGAGAAAGTGGCTGTTATTCGGCGTGATCATGATCATCGAGTTGAATCTGATTCCAATAGTTGGGAAACGGATAAAGTTGTTCAAATTGGTGGGAAAATTGATGAATTCAGAGACAAACCTATAGTGGGAAAATTAGTAGTCCCGGAAATTGTGGATGTGAGTTGTGGATCGCCCAAGATACACAATTCAGAAAAGATTGATGGGGACAGACTTCACAACGAAATTGAACTCGAGGATTTGGCAGAGGATCCTGTTGTGGATGAGGGTAATGAAGGGGTTGTTAATATTAACAAAGTTGAGGTAGAATTGATGGAATGTGATTCTAGAGAGAACAAAGTTGAAGAGGTTGAGATCTCGCAGTGCGAAAGATATTATAATGAGATTGAAGAATCTAGTATGAACGAGGAAATGGGTGAAAACAAGGGCTCGGTGGTGGATGAGGATGATTGGGAAGGAATAGAAAGAACTGAATTGGAGAGGCGCTTTGGTGCTGCAGTTGTATTTGTCGGTTCCAAGAGCAATGCTAATCTTAGTAATGATGTGAAGATGAAGCTTCATGGTTATCACCGAATTGCTACTCAGGGTCCTTGCCATGAACCTCAGCCAATGGCTCTGAAGTTCTCTGCTCGAGCAAAGTGGATTGCATGGCGACAGCTTGGGATTATGAGTCCAGAGGAAGCTATGGAGCAATATATCAGCCTTCTATCAGAAAACATTCCTGATTGGATTGTAGAAAATCCTTATGATAATGCTAAACCGGCTTCTGCAAAACTAACCTTATGATTTGAAGGCATAGCTATTAGCTACCATGGCAAAGAAGCTGAAAATTATAAGGAAAGCAAAACAGAATTCCTAACAGTAAAACAGAATTTGCTGATTGCAATGCAAAGGGAATATTCCTAAGTGGTTGCAACTAACTCCTTCAAAGCAGCCAAGTAACAGCTAGACAGGATCTTCCAGTCGAGCTGGTCATTTAGTGATCCTTTTGGGCTATTGTGGTCAGTAAGGATGGTGAACTGTGGCCAAGTAAGTATTGACGCCACTTTCGAACGGTTGTGGTAATGGCGTGCAATTCTCAGCCATACGTGGATGTGTTTTGCATACGAGGGGCAAATGGCTTACTATAAAAAGTAATGGGATGTCCGTGTTGCATCAGTGCAAGCCCGAAAGCATCTGTTTCTAACACAAGAGGCAAAGAAAAATTTGGGAGAACCAGGACTAGTGCCTTGGTCATGGCGCGTTTGAGATTATCAAATGCAAGTTGAGCCTCAGGTGTACAGTTGCACAAGAGAGAATTGAGGGGAGAAGTAATTGAAGCATACCCGTTAATGAATTTGTGATAAAAGTCTGTGAGACCAAGGAATCCACATAAATCCTTTTGATTGGAAGGAATAGGCCAGTCTAACATAACCTTGATCTGGGATTGCTCAAGTTCAACTCCTTTGCCAAAGATAACGTGACCTAAGTATACTCCAACTGATGTTGCGCAAATAAGCACTTAGAATGCTTGAGGTAAAATTTCCATTGCCATAAAGTTTGGAAAATAAGCTCTAAATGGTGAAGGTGTGACGACAATGTTCCACTATAGATGAGAATGACGTCGAAGAACACAATAACGAATTTGTGCAAAAATGGTTGGAGAAGTGTACTCATTGTTGCTTGGAAGGTCGAAGGTGCATTGCAGAGGTCAAACGACATGACCCGATATTCGTAATGACCTTGATGAGTTTGAAACATAGTTTTCACAATGTCATCGTCGACCATTAAAATTTGATCAGAACCTTGACGTAAATCAAGTTTGGAGAACCACGACACATGGTCGAGATCATCCAAAAGCTCGTTGATTGTTGGCATTAGAAAACGATCTTTAATGGTAATGGAGTTCATGATAACGGTTAATTATGAGTATATTTTGGGGGGTTAAATTATAGAGAAATTTGTAATTTTTTTCTCTTCTAATTTTTCTTTTTTGAGCAAA
Coding sequences of Glyma01g39920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g39920.1 sequence type=CDS gene model=Glyma01g39920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCTCCTATGGGAGCTTGCCTTCACCATAGCTCTTTCTCTTTTACTTCCATTGGTTTTCCTCAAACTCCTTTCCGTGACCCCAAACTTCGAAGCAAATGAGAAAGTGGCTGTTATTCGGCGTGATCATGATCATCGAGTTGAATCTGATTCCAATAGTTGGGAAACGGATAAAGTTGTTCAAATTGGTGGGAAAATTGATGAATTCAGAGACAAACCTATAGTGGGAAAATTAGTAGTCCCGGAAATTGTGGATGTGAGTTGTGGATCGCCCAAGATACACAATTCAGAAAAGATTGATGGGGACAGACTTCACAACGAAATTGAACTCGAGGATTTGGCAGAGGATCCTGTTGTGGATGAGGGTAATGAAGGGGTTGTTAATATTAACAAAGTTGAGGTAGAATTGATGGAATGTGATTCTAGAGAGAACAAAGTTGAAGAGGTTGAGATCTCGCAGTGCGAAAGATATTATAATGAGATTGAAGAATCTAGTATGAACGAGGAAATGGGTGAAAACAAGGGCTCGGTGGTGGATGAGGATGATTGGGAAGGAATAGAAAGAACTGAATTGGAGAGGCGCTTTGGTGCTGCAGTTGTATTTGTCGGTTCCAAGAGCAATGCTAATCTTAGTAATGATGTGAAGATGAAGCTTCATGGTTATCACCGAATTGCTACTCAGGGTCCTTGCCATGAACCTCAGCCAATGGCTCTGAAGTTCTCTGCTCGAGCAAAGTGGATTGCATGGCGACAGCTTGGGATTATGAGTCCAGAGGAAGCTATGGAGCAATATATCAGCCTTCTATCAGAAAACATTCCTGATTGGATTGTAGAAAATCCTTATGATAATGCTAAACCGGCTTCTGCAAAACTAACCTTATGA
>Glyma01g39920.2 sequence type=CDS gene model=Glyma01g39920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCTCCTATGGGAGCTTGCCTTCACCATAGCTCTTTCTCTTTTACTTCCATTGGTTTTCCTCAAACTCCTTTCCGTGACCCCAAACTTCGAAGCAAATGAGAAAGTGGCTGTTATTCGGCGTGATCATGATCATCGAGTTGAATCTGATTCCAATAGTTGGGAAACGGATAAAGTTGTTCAAATTGGTGGGAAAATTGATGAATTCAGAGACAAACCTATAGTGGGAAAATTAGTAGTCCCGGAAATTGTGGATGTGAGTTGTGGATCGCCCAAGATACACAATTCAGAAAAGATTGATGGGGACAGACTTCACAACGAAATTGAACTCGAGGATTTGGCAGAGGATCCTGTTGTGGATGAGGGTAATGAAGGGGTTGTTAATATTAACAAAGTTGAGGTAGAATTGATGGAATGTGATTCTAGAGAGAACAAAGTTGAAGAGGTTGAGATCTCGCAGTGCGAAAGATATTATAATGAGATTGAAGAATCTAGTATGAACGAGGAAATGGGTGAAAACAAGGGCTCGGTGGTGGATGAGGATGATTGGGAAGGAATAGAAAGAACTGAATTGGAGAGGCGCTTTGGTGCTGCAGTTGTATTTGTCGGTTCCAAGAGCAATGCTAATCTTAGTAATGATGTGAAGATGAAGCTTCATGGTTATCACCGAATTGCTACTCAGGGTCCTTGCCATGAACCTCAGCCAATGGCTCTGAAGTTCTCTGCTCGAGCAAAGTGGATTGCATGGCGACAGCTTGGGATTATGAGTCCAGAGGAAGCTATGGAGCAATATATCAGCCTTCTATCAGAAAACATTCCTGATTGGATTGTAGAAAATCCTTATGATAATGCTAAACCGGCTTCTGCAAAACTAACCTTATGA
Predicted protein sequences of Glyma01g39920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g39920.1 sequence type=predicted peptide gene model=Glyma01g39920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MELLWELAFTIALSLLLPLVFLKLLSVTPNFEANEKVAVIRRDHDHRVESDSNSWETDKVVQIGGKIDEFRDKPIVGKLVVPEIVDVSCGSPKIHNSEKIDGDRLHNEIELEDLAEDPVVDEGNEGVVNINKVEVELMECDSRENKVEEVEISQCERYYNEIEESSMNEEMGENKGSVVDEDDWEGIERTELERRFGAAVVFVGSKSNANLSNDVKMKLHGYHRIATQGPCHEPQPMALKFSARAKWIAWRQLGIMSPEEAMEQYISLLSENIPDWIVENPYDNAKPASAKLTL*
>Glyma01g39920.2 sequence type=predicted peptide gene model=Glyma01g39920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MELLWELAFTIALSLLLPLVFLKLLSVTPNFEANEKVAVIRRDHDHRVESDSNSWETDKVVQIGGKIDEFRDKPIVGKLVVPEIVDVSCGSPKIHNSEKIDGDRLHNEIELEDLAEDPVVDEGNEGVVNINKVEVELMECDSRENKVEEVEISQCERYYNEIEESSMNEEMGENKGSVVDEDDWEGIERTELERRFGAAVVFVGSKSNANLSNDVKMKLHGYHRIATQGPCHEPQPMALKFSARAKWIAWRQLGIMSPEEAMEQYISLLSENIPDWIVENPYDNAKPASAKLTL*