Report for Sequence Feature Glyma01g39890
Feature Type: gene_model
Chromosome: Gm01
Start: 51727207
stop: 51730602
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g39890
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G67370 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1230) | chr5:26877667-26879465 REVERSE LENGTH=327
SoyBase E_val: 3.00E-142 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF06799 PFAM
Protein of unknown function (DUF1230)
JGI ISS
UniRef100_I1J9C4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9C4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9FN15 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAC18972.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FN15_ARATH
SoyBase E_val: 1.00E-139 ISS
Expression Patterns of Glyma01g39890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g39890
Paralog Evidence Comments
Glyma11g05390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g39890 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g191600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g39890
Coding sequences of Glyma01g39890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g39890.1 sequence type=CDS gene model=Glyma01g39890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTAGACTAAATGTCTACTGTTCGCTAATTCCAAGTGCAAGACAAGCCAGACCTGGCAGCAGCTATGGCTCCTTGATCATCCATAATCACAAAGCTTCAAAATTTTCTCATCGGATTTCCATCAAGGCTAAGGCCATAAAAGATGAGATGGACGGAGAAACAAGCGGATCTTCAGGACGTAGCTGGGATCCTGGGTTGGAAATTGAGGTCCCTTTTGAGCAGAGGCCGGTGAATGAGTACTCATCTCTAAAGGATGGAATCTTGTATTCGTGGGGTGAACTAGGTCCGGGATCGTTCTTCCTTCGCCTTGGAGGTCTCTGGCTGGCAGTATTTACAGTTCTTGGGGGGCCAATTGCAGCTGCAAGCTTTAATCCTTCAAAAGAGCCTCTAAGATTTATACTAGCTGGTGGAACAGGAACACTCTTCATTGTGTCTTTGATTGTCTTGAGGATTTATCTGGGTTGGAGTTATGTTGGTGATAGACTTCTATCAGCGGTCATCCCTTATGAAGAAAGTGGATGGTACGACGGACAGATGTGGGTCAAGCCGCCCGAGATCCTAGCTCGTGATAGATTGTTGGGCTCTTACAAGGTTAAACCAGTCGTTAAATTGCTGAAACAAACTCTAGTTGGGACAGGAGCATTGCTTGTTACAGGAGTTATGCTATTTATCTTTGCTACACCATTGGAGAATTTTTTTCGAACTACCTTTACCAAAGAAGAAATTAAATCAACTGTTCAAGCTCCCAAGGTTAACACAAAGCTCTTAAGAAAAGAGGAGCTGCTTAAATTACCAGTCGAGGTGATAACTGATGATGATCTAGCAGCTGCTGCTGCTGAGGCTGCTGATGGAAGACCTGTCTACTGTAGGGATAGGTATTATCGAGCATTAGCAGGAGGGCAGTACTGCAAATGGGAAGATCTGCTCAAATAA
Predicted protein sequences of Glyma01g39890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g39890.1 sequence type=predicted peptide gene model=Glyma01g39890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIRLNVYCSLIPSARQARPGSSYGSLIIHNHKASKFSHRISIKAKAIKDEMDGETSGSSGRSWDPGLEIEVPFEQRPVNEYSSLKDGILYSWGELGPGSFFLRLGGLWLAVFTVLGGPIAAASFNPSKEPLRFILAGGTGTLFIVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEILARDRLLGSYKVKPVVKLLKQTLVGTGALLVTGVMLFIFATPLENFFRTTFTKEEIKSTVQAPKVNTKLLRKEELLKLPVEVITDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLLK*