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Report for Sequence Feature Glyma01g39790

Feature Type:gene_model
Chromosome:Gm01
Start:51653323
stop:51656914
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g39790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G23150AT Annotation by Michelle Graham. TAIR10: natural resistance-associated macrophage protein 3 | chr2:9856422-9858565 REVERSE LENGTH=509 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006828GO-bp Annotation by Michelle Graham. GO Biological Process: manganese ion transport SoyBaseN/AISS
GO:0006875GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metal ion homeostasis SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0010043GO-bp Annotation by Michelle Graham. GO Biological Process: response to zinc ion SoyBaseN/AISS
GO:0015691GO-bp Annotation by Michelle Graham. GO Biological Process: cadmium ion transport SoyBaseN/AISS
GO:0015692GO-bp Annotation by Michelle Graham. GO Biological Process: lead ion transport SoyBaseN/AISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0055072GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis SoyBaseN/AISS
GO:2000379GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of reactive oxygen species metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005384GO-mf Annotation by Michelle Graham. GO Molecular Function: manganese ion transmembrane transporter activity SoyBaseN/AISS
GO:0015103GO-mf Annotation by Michelle Graham. GO Molecular Function: inorganic anion transmembrane transporter activity SoyBaseN/AISS
GO:0046873GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity SoyBaseN/AISS
KOG1291 KOG Mn2+ and Fe2+ transporters of the NRAMP family JGI ISS
PTHR11706Panther MANGANESE TRANSPORTER JGI ISS
PTHR11706:SF8Panther NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN (NRAMP) (MANGANESE TRANSPORTER) JGI ISS
PF01566PFAM Natural resistance-associated macrophage protein JGI ISS
UniRef100_G7K3Y6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Natural resistance-associated macrophage protein n=1 Tax=Medicago truncatula RepID=G7K3Y6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1J9B4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9B4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g39790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g39790
ParalogEvidenceComments
Glyma11g05500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g39790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g190700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g39790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g39790
>Glyma01g39790.1   sequence type=CDS   gene model=Glyma01g39790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCCTCAAGAGACCCAACAACCTCTGTTATCGGAGGAGCAAGAAGAGACAGCCTACGATTCCTCGGAGAAGGTTGTGGTGGTCGGAATCGACGAGCACGACGGCGACTTGGAGGCGCCGCCGTTCTCATGGCGGAAGCTGTGGCTCTTCACCGGGCCCGGGTTTCTGATGAGCATCGCTTTTCTGGATCCCGGGAACCTCGAGGGGGATCTTCAGTCCGGTGCCATTGCTGGGTACTCGCTCCTGTGGCTCCTCATGTGGGCCACGGCTATGGGCCTTCTTATCCAGCTTCTATCGGCTCGGCTCGGCGTGGCTACGGGGAGACACTTAGCCGAACTCTGCAGGGAAGAGTATCCCACATGGGCTAGGATTGTTCTGTGGTTGATGACTGAGGTTGCTCTTATTGGCGCTGACATACAAGAGGTTATTGGGAGCGCTATTGCTATCAGGATTCTCAGTAACGGCGTCGTTCCGCTCTGGGCCGGGGTCGTCATTACAGCTTTTGATTGTTTTATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGAAACTGGAAGCGTTTTTCGGTGTTCTTATTGGTGTAATGGCTCTCTCATTTGCTTGGATGTTTGGTGAAGCTAAGCCCAATGGTGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTGGGTTGCGTTATTATGCCTCACAATGTTTACTTGCATTCTGCGCTTGTTCAATCAAGAAGGGTTGACCCCAGCAAGAAAGGCCGTGTTCAGGAAGCTCTTAATTACTACTCCATAGAGTCCACCATCGCCCTTATAGTGTCCTTTGTCATTAATATATTTGTCACAACTGTGTTTGCTAAGGGCTTTTATGGTACTGAAATAGCAAATAGCATTGGTCTTGTAAATGCAGGGCAGTACCTTCAGGAGAAGTATGGGGGTGGACTATTCCCAATCCTGTATATATGGGGTATTGGGTTGTTAGCAGCCGGCCAGAGTAGCACAATTACTGGTACATATGCTGGACAGTTTATCATGGGGGGTTTTCTGAATTTAAGGTTGAAAAAGTGGATGAGGGCATTGATAACACGAAGTTTTGCCATCATCCCAACCATGATAGTTGCTCTTATATTTGATACCTCAGAGGAATCATTAGATGTTCTGAATGAATGGCTTAATGTTCTCCAGTCAGTTCAAATCCCCTTTGCACTTGTTCCCTTGCTTTGCTTGGTGTCCAAAGAACAGATAATGGGCAGTTTCAGAATTGGCCCTGTCCTCAAGATTATTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAATGGCTATCTATTGCTGGAATTCTTCTCTTCTGAAGTGAATGGGGCAGTGTTTGCCACTGTAGTGTGTGTATTAACAGCTGCGTATGTTGCATTTGTACTTTACCTTATTTCACGGGCCATTACCTATACACCGTGGCAAAGGTTAACCCGATCAAAGACAGTTGCTACCACAGTGAATTGA
Predicted protein sequences of Glyma01g39790
>Glyma01g39790.1   sequence type=predicted peptide   gene model=Glyma01g39790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPQETQQPLLSEEQEETAYDSSEKVVVVGIDEHDGDLEAPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCREEYPTWARIVLWLMTEVALIGADIQEVIGSAIAIRILSNGVVPLWAGVVITAFDCFIFLFLENYGVRKLEAFFGVLIGVMALSFAWMFGEAKPNGVDVLVGILVPKLSSRTIQQAVGVVGCVIMPHNVYLHSALVQSRRVDPSKKGRVQEALNYYSIESTIALIVSFVINIFVTTVFAKGFYGTEIANSIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSFAIIPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALVPLLCLVSKEQIMGSFRIGPVLKIISWLVAALVIVINGYLLLEFFSSEVNGAVFATVVCVLTAAYVAFVLYLISRAITYTPWQRLTRSKTVATTVN*






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