Glyma01g39600 - SoyBase

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Report for Sequence Feature Glyma01g39600

Feature Type:	gene_model
Chromosome:	Gm01
Start:	51531990
stop:	51534998
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g39600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G23320	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 15 \| chr2:9924998-9926154 FORWARD LENGTH=317	SoyBase	E_val: 3.00E-91	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
PF10533	PFAM	Plant zinc cluster domain	JGI		ISS
UniRef100_C9DI15	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor 26 n=1 Tax=(Populus tomentosa x P. bolleana) x P. tomentosa RepID=C9DI15_9ROSI	SoyBase	E_val: 1.00E-151	ISS
UniRef100_UPI000189D00F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D00F related cluster n=1 Tax=unknown RepID=UPI000189D00F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g39600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g39600

Paralog	Evidence	Comments
Glyma11g05650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g39600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g189100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g39600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g39600

Limit To All Plant Sequences

>Glyma01g39600.2   sequence type=transcript   gene model=Glyma01g39600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACACAATTGATGTAATTGAAATGCTATATCAAACGGCTAAAACAATGGTTTTGACCTAATTTTAAAGCCCCAACGTCGCTGAGATCAATAATAACCCTCCTTGGGACCCACGACTCAGAAAAAGTCAATATCTCCCACTACCTCCAGATGCTTTTTCTCATCGGAAAAAAAAAAAGCATTTTCTCCGTTCAGAGAGAGACCAAAATACCCTGTTCAGTGTGTTACATACACTTTGACGGAAAGGGTTAGCTAGCGTGACAGTGCATTCACCTAGTGGACCAAACAAGCCACTGCACTATCTTGTTTTTATATTTATTTTCTTTTGCATCATTTGACCGGGGTAATACCCTATGACCCTCCTCTTTATTTTCTTTAACACCTCCTCCTCTTTCTTTTCTCAGCAAGTATGGCCGTGGAATTCATGATGGGGTACAGGAACGACACTTTCGCGGAGGATAATGCGGTTCGTGAAGCTGCGTCGGGGCTAGAGAGCGTCGAGAAACTCATCAAGTTGCTGTCGCATACTCAACAACAATACCAGACAACCTCAAAGTCTTCCATGGAAAACATCGACACCGACTACACAGCTGTCGCTGACGTCGCGGTTTCTAAGTTCAAGAAGGTCATTTCGCTTCTGGGCCGCACCAGAACCGGTCACGCGCGTTTTAGAAGAGCCCCTGTGCCTGTGCCTGTGCCTGTGGCTTCACCTCCACCTTCGGAACCGAGAGTCTACCGTGCTACGCCGCTGCAGCAGATCCCGCCACCCACCCTTCACACTCACTCTGTCACTGACCACTCTCTGATCCCCAAAATTGAGAGAAAGGACTCTTCCAAGACCATTAATTTCTCCTATTCAAATTCGTTTGTCTCCTCCCTCACCGCTGGCGATACCGACACTAAACAACCGTGCTCGTCGTCGCCGTCGCCGGCCACGGCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCCGGAAAGCCTCCTCTTTCGTCCTCTTCGTTGAAGAGGAAGTGTAGCTCTGAGAACTTGGGTTCTGCTAAGTGTGGCAGTTCCTCTAGCCGATGCCATTGTTCAAAGAAGAGAAAAATGAGGCAGAAGAGGGTGGTGAGGGTACCGGCAATAAGCTTGAAGATGGCTGATATTCCACCAGACGATTATTCTTGGAGGAAATACGGACAGAAACCCATTAAAGGATCCCCCCATCCAAGAGGTTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAACACGTAGAGAGGGCTCTGGATGATCCATCTATGTTGGTAGTCACCTATGAAGGAGAGCACAATCATACACTCTCTGCAGCCGAAGCTACTAATCTCATCCTAGAATCCTCTTAACTAATTAATCATCGTTTTCCCATCACAAAGTATGTTCTGATCATGTCATTCATGGCTTGTACAATTGAAATTTTTAATCGAGCAGAGCTTTATCTCGAAGGAGATTAATTGATGGGGGTGTTTCCATGTTCAGATATCTTCTATACAATATTGGATTCCTTTATCTTTTCTCTCTTCAAAGACTTGGACCGACTCTGAATCTGAATCCATCACGATTCACGACTAGAATTTTCTTTTCTTTTCTTTTTTTTAAAGGTGAAGAAGGCGAATTTGGTAACGGATTTTATTTAATTCAAATCTAAAGAGAGAAAAAGAAGGAAGTGGGGCTTTATTCCTTTTTATTTTCTTTTCTTTTTGATTGCTTTACATGTGGTGCTTATCTTGGATGCTCATAAATCATAATCTCTCTCAACATTAATGGGAGAGTTTCAATGAAAGAAACGGAGTCAAAGAAGAGGACGGACATGTCGTGTTAAAGACAGTTGACTAAAAGAGAGTAGTTGGGACGGCAAATTATGGTGAGTGAATGAAGGTGAGGTGAGTGATAGGTATAGGAGAGGGAAAGAGCGATGAATAGGGTTTTTAATGCAATTTTGTTTGGACCGTTTTTGGCTTCTAGGATAAAGGTTGGCTAGAAATTTAGTACACTTGATGAGAGGGGTTCGTGATCCAGAAATCCTATGTGGGAAAACCTATGTCAAAGTCAAAATGGGTGGGTGTGGAATTGAATCAGTTGATAAGTTCTAACACTGAAGGGTCCTACCTCGTTTGTTAATTTGTTTATTTGCTTTCTTTCCTTTGCCTCTGCCTTAACGTTAGGTTTGTGGAGCCTATAGCTTCAAGCCTTCTTTGCTCATTCATCCATTTTGTTTCACCATTTACATGCATGTGGCCTCCTCCTCAATAATTTTGTCTTTTGTTTTCTTCCCATACTTTCTCGCAGTCCAAGTCAAAAACATTGTTAGGTTTAAATTCTGGTCATGTGATAGGTAGGCATGGATACAAATAGGTTAGACTAATAAGGCTTTGCTTAAATAGATATGAGACTTTGATTGCTTATAAAATGTAAAGTTTAAGCTTGATTTGTTCTTATTATAGACTTGATTTATAGGTTTTTACTTCTCTTTATATGAGACTCATA

Coding sequences of Glyma01g39600

Limit To All Plant Sequences

>Glyma01g39600.1   sequence type=CDS   gene model=Glyma01g39600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGTGGAATTCATGATGGGGTACAGGAACGACACTTTCGCGGAGGATAATGCGGTTCGTGAAGCTGCGTCGGGGCTAGAGAGCGTCGAGAAACTCATCAAGTTGCTGTCGCATACTCAACAACAATACCAGACAACCTCAAAGTCTTCCATGGAAAACATCGACACCGACTACACAGCTGTCGCTGACGTCGCGGTTTCTAAGTTCAAGAAGGTCATTTCGCTTCTGGGCCGCACCAGAACCGGTCACGCGCGTTTTAGAAGAGCCCCTGTGCCTGTGCCTGTGCCTGTGGCTTCACCTCCACCTTCGGAACCGAGAGTCTACCGTGCTACGCCGCTGCAGCAGATCCCGCCACCCACCCTTCACACTCACTCTGTCACTGACCACTCTCTGATCCCCAAAATTGAGAGAAAGGACTCTTCCAAGACCATTAATTTCTCCTATTCAAATTCGTTTGTCTCCTCCCTCACCGCTGGCGATACCGACACTAAACAACCGTGCTCGTCGTCGCCGTCGCCGGCCACGGCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCCGGAAAGCCTCCTCTTTCGTCCTCTTCGTTGAAGAGGAAGTGTAGCTCTGAGAACTTGGGTTCTGCTAAGTGTGGCAGTTCCTCTAGCCGATGCCATTGTTCAAAGAAGAGCAGAAAAATGAGGCAGAAGAGGGTGGTGAGGGTACCGGCAATAAGCTTGAAGATGGCTGATATTCCACCAGACGATTATTCTTGGAGGAAATACGGACAGAAACCCATTAAAGGATCCCCCCATCCAAGAGGTTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAACACGTAGAGAGGGCTCTGGATGATCCATCTATGTTGGTAGTCACCTATGAAGGAGAGCACAATCATACACTCTCTGCAGCCGAAGCTACTAATCTCATCCTAGAATCCTCTTAA

>Glyma01g39600.2   sequence type=CDS   gene model=Glyma01g39600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGTGGAATTCATGATGGGGTACAGGAACGACACTTTCGCGGAGGATAATGCGGTTCGTGAAGCTGCGTCGGGGCTAGAGAGCGTCGAGAAACTCATCAAGTTGCTGTCGCATACTCAACAACAATACCAGACAACCTCAAAGTCTTCCATGGAAAACATCGACACCGACTACACAGCTGTCGCTGACGTCGCGGTTTCTAAGTTCAAGAAGGTCATTTCGCTTCTGGGCCGCACCAGAACCGGTCACGCGCGTTTTAGAAGAGCCCCTGTGCCTGTGCCTGTGCCTGTGGCTTCACCTCCACCTTCGGAACCGAGAGTCTACCGTGCTACGCCGCTGCAGCAGATCCCGCCACCCACCCTTCACACTCACTCTGTCACTGACCACTCTCTGATCCCCAAAATTGAGAGAAAGGACTCTTCCAAGACCATTAATTTCTCCTATTCAAATTCGTTTGTCTCCTCCCTCACCGCTGGCGATACCGACACTAAACAACCGTGCTCGTCGTCGCCGTCGCCGGCCACGGCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCCGGAAAGCCTCCTCTTTCGTCCTCTTCGTTGAAGAGGAAGTGTAGCTCTGAGAACTTGGGTTCTGCTAAGTGTGGCAGTTCCTCTAGCCGATGCCATTGTTCAAAGAAGAGAAAAATGAGGCAGAAGAGGGTGGTGAGGGTACCGGCAATAAGCTTGAAGATGGCTGATATTCCACCAGACGATTATTCTTGGAGGAAATACGGACAGAAACCCATTAAAGGATCCCCCCATCCAAGAGGTTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAACACGTAGAGAGGGCTCTGGATGATCCATCTATGTTGGTAGTCACCTATGAAGGAGAGCACAATCATACACTCTCTGCAGCCGAAGCTACTAATCTCATCCTAGAATCCTCTTAA

Predicted protein sequences of Glyma01g39600

Limit To All Plant Sequences

>Glyma01g39600.1   sequence type=predicted peptide   gene model=Glyma01g39600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVEFMMGYRNDTFAEDNAVREAASGLESVEKLIKLLSHTQQQYQTTSKSSMENIDTDYTAVADVAVSKFKKVISLLGRTRTGHARFRRAPVPVPVPVASPPPSEPRVYRATPLQQIPPPTLHTHSVTDHSLIPKIERKDSSKTINFSYSNSFVSSLTAGDTDTKQPCSSSPSPATAFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSAKCGSSSSRCHCSKKSRKMRQKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAAEATNLILESS*

>Glyma01g39600.2   sequence type=predicted peptide   gene model=Glyma01g39600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVEFMMGYRNDTFAEDNAVREAASGLESVEKLIKLLSHTQQQYQTTSKSSMENIDTDYTAVADVAVSKFKKVISLLGRTRTGHARFRRAPVPVPVPVASPPPSEPRVYRATPLQQIPPPTLHTHSVTDHSLIPKIERKDSSKTINFSYSNSFVSSLTAGDTDTKQPCSSSPSPATAFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSAKCGSSSSRCHCSKKRKMRQKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAAEATNLILESS*

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