SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36945 | AT | Annotation by Michelle Graham. TAIR10: PLC-like phosphodiesterases superfamily protein | chr4:17420098-17422047 REVERSE LENGTH=408 | SoyBase | E_val: 0 | ISS |
| UniRef100_G7K6M0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MAP-like protein kinase n=1 Tax=Medicago truncatula RepID=G7K6M0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LHD6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHD6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g39410 not represented in the dataset |
Glyma01g39410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g05840 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g187200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g39410.3 sequence type=transcript gene model=Glyma01g39410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTGTAGACGAGTCATACAACCAAAACAAGTTTAGTCTTCTAAAATTTTGCTAATTCAATTATTGACCACCTCTCTAATTAATCTTTCAAAACAACTACAGTGAGGACCACCCTGTTGATTATTATTTTCAAGATCTCTTAATTTAGCAAAGAAATTGCTTATAAGCATGTTTCAACTTTCAAATCTAATTTTTGAAAAATCATATTCTACTATTAATTATCTCCAAAATTCTGTAAAAGAAAAAAAAAAAGAGAGAGAGAGAAGGAAAATGCATATAGGTAACACAGAACAGAACAGAACAGAAGGATAACAAGACAGAAAATACGATACCCAATCGGTTGATATGTGATATCAGTGTAGTTCCCAATCCTCACCTTCCCTGGCTTGGCTTGCTCACCAAATTTGTTGTCCTTTTATTGTTAGAACTTTCCTCTTATCTGAAAAAGAGAAGTGTCAGTGCACAAAGACATACAGAACAGAACCTGAGAAACAGACCCTCTCAAACCGGAAAGCGCAAATGAAGCCCATTCCATGCCTAGTTAGCTATCTTACATTAAATGTTCATCATGTCACGTCTTTTTTAATTTTTATTTTAAACATCAACACTCCTTGCATATGATTCATGTTTCATTTTCTGCAGAGCATTCGCATACTTCTGCTAATCGCTATCTGTCTCTTCACCTCTTCCTCCGCTTCCAAGATCGGAGAAACTTGCGGGTCAGACAACAAATGCGACGCTGGACTCAGCTGCCAAGCATGTCCTGCCAATGGGAATACCCGAACCAGATGTTCGCGGATACAACCATTGAGCCCCACCTCTAGGGTGAAAGGCTTACCGTTTAACCGCTATTCATGGCTCACGACTCACAACTCTTATGCTCTGGCCGGAGCCAGATCCGCCACCGGATCTGTCCTTGTAGCCCCTATGAACCAGGAAGACACAGTTGCTGAACAACTCAAGAACGGAGTTAGAGGATTTATGTTGGATATGTATGATTTTCAAAAGGACATCTGGTTGTGCCACTCCTTCCAAAGCAAATGTTTCAACTTCACTGCATTTCAACCCGCCATAAACGTGCTTAAAGACATGCGGACATTTCTAGATGGAAATCCATCAGAAATTATCACGATCTTCATTGAGGACTATGTCACAGCTCCTCAGGGCCTAACAAAGGTGTTCAAAGATTCAGGGCTGAGCAAGTACATATTCCCGGTGTCTCGCATGCCCAAGAATGGTGGAGATTGGCCAACCGTCGATGACATGGTTCAGAAGAATCAGCGCCTAGTCGTCTTCACCTCCAAATCTGCCAAGGAAGCTTCTGAGAACATTGCTTATCAGTGGACATACGTTGTAGAAAACCAATATGGAGATGATGGCATGAAAGCTGGTTCTTGTCCAAGCCGTGCAGAATCACCCGCAATGAACACAGAGTCTAGATCATTGGTTCTGGTCAACTACTTTCATTCTGCTCCAAATCGATCTCAGGCCTGCGCTGACAATTCGGCTCCACTACTTGATATGACGAAGACTTGTCATGAAGCAGCCGGCAATCGTTGGGCCAATTTCATTGCTGTTGATTATTACCAAAGGAGTGATGGCGGAGGAGCACCACTAGCCGTTGATGAAGCCAACGGTCATCTCACTTGTGGGTGCGACAACATAGCCTATTGCAAGGAAAACGCTAAGTTTGGCACTTGTGATGTCCCTCCCATTTCTCCACCTCCACCTGCTACAGAAACCCTCTCCACCGGAAACCAGCAGACCCAAAATGATAATCACACAAACAATGCTTATATTGGTAGAACGGCCAAGCTGATGCAATCGGTTGTTGGAATTTTGGCTACGACAACTTTCTTGGCATGGTTATAGAATGTCATTAGTTTGGGGGAGTTTATAATCATTGAAAATATGTATGCATGTATGTTGTAAACATAGAGTTTACTCAGTTTAGAATTTAGATGGTTCAGCCAATTTGATTCCGTGAATTGTATGGAATCTGAGTCATTTTTCATCCCACGGCACACTTTATGGCTGTATTGTGACTTAGTTTGTTTAATGATTGAAAGAACTTATCAAATACTTATCTCATGAAAGAACTCCTTTCTATAACAGCTGTTGGATGTGCACTCTGCTTCTTAATAAAAATGCAGTTACATTATAGTGAATTTGGGGAGCAAGTCATGTGAAGATTTGCGAGATCCAGATTGCGCAATGGTGGGGCTTCCTCTTGTACACAAGACAAAGTCCAGTTATAGTGGCCAGCCACCTAGAATATGAATCCATTAGTGGAACTAT
>Glyma01g39410.2 sequence type=CDS gene model=Glyma01g39410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCCCATTCCATGCCTAAGCATTCGCATACTTCTGCTAATCGCTATCTGTCTCTTCACCTCTTCCTCCGCTTCCAAGATCGGAGAAACTTGCGGGTCAGACAACAAATGCGACGCTGGACTCAGCTGCCAAGCATGTCCTGCCAATGGGAATACCCGAACCAGATGTTCGCGGATACAACCATTGAGCCCCACCTCTAGGGTGAAAGGCTTACCGTTTAACCGCTATTCATGGCTCACGACTCACAACTCTTATGCTCTGGCCGGAGCCAGATCCGCCACCGGATCTGTCCTTGTAGCCCCTATGAACCAGGAAGACACAGTTGCTGAACAACTCAAGAACGGAGTTAGAGGATTTATGTTGGATATGTATGATTTTCAAAAGGACATCTGGTTGTGCCACTCCTTCCAAAGCAAATGTTTCAACTTCACTGCATTTCAACCCGCCATAAACGTGCTTAAAGACATGCGGACATTTCTAGATGGAAATCCATCAGAAATTATCACGATCTTCATTGAGGACTATGTCACAGCTCCTCAGGGCCTAACAAAGGTGTTCAAAGATTCAGGGCTGAGCAAGTACATATTCCCGGTGTCTCGCATGCCCAAGAATGGTGGAGATTGGCCAACCGTCGATGACATGGTTCAGAAGAATCAGCGCCTAGTCGTCTTCACCTCCAAATCTGCCAAGGAAGCTTCTGAGAACATTGCTTATCAGTGGACATACGTTGTAGAAAACCAATATGGAGATGATGGCATGAAAGCTGGTTCTTGTCCAAGCCGTGCAGAATCACCCGCAATGAACACAGAGTCTAGATCATTGGTTCTGGTCAACTACTTTCATTCTGCTCCAAATCGATCTCAGGCCTGCGCTGACAATTCGGCTCCACTACTTGATATGACGAAGACTTGTCATGAAGCAGCCGGCAATCGTTGGGCCAATTTCATTGCTGTTGATTATTACCAAAGGAGTGATGGCGGAGGAGCACCACTAGCCGTTGATGAAGCCAACGGTCATCTCACTTGTGGGTGCGACAACATAGCCTATTGCAAGGAAAACGCTAAGTTTGGCACTTGTGATGTCCCTCCCATTTCTCCACCTCCACCTGCTACAGAAACCCTCTCCACCGGAAACCAGCAGACCCAAAATGATAATCACACAAACAATGCTTATATTGGTAGAACGGCCAAGCTGATGCAATCGGTTGTTGGAATTTTGGCTACGACAACTTTCTTGGCATGGTTATAG >Glyma01g39410.3 sequence type=CDS gene model=Glyma01g39410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTCATTTTCTGCAGAGCATTCGCATACTTCTGCTAATCGCTATCTGTCTCTTCACCTCTTCCTCCGCTTCCAAGATCGGAGAAACTTGCGGGTCAGACAACAAATGCGACGCTGGACTCAGCTGCCAAGCATGTCCTGCCAATGGGAATACCCGAACCAGATGTTCGCGGATACAACCATTGAGCCCCACCTCTAGGGTGAAAGGCTTACCGTTTAACCGCTATTCATGGCTCACGACTCACAACTCTTATGCTCTGGCCGGAGCCAGATCCGCCACCGGATCTGTCCTTGTAGCCCCTATGAACCAGGAAGACACAGTTGCTGAACAACTCAAGAACGGAGTTAGAGGATTTATGTTGGATATGTATGATTTTCAAAAGGACATCTGGTTGTGCCACTCCTTCCAAAGCAAATGTTTCAACTTCACTGCATTTCAACCCGCCATAAACGTGCTTAAAGACATGCGGACATTTCTAGATGGAAATCCATCAGAAATTATCACGATCTTCATTGAGGACTATGTCACAGCTCCTCAGGGCCTAACAAAGGTGTTCAAAGATTCAGGGCTGAGCAAGTACATATTCCCGGTGTCTCGCATGCCCAAGAATGGTGGAGATTGGCCAACCGTCGATGACATGGTTCAGAAGAATCAGCGCCTAGTCGTCTTCACCTCCAAATCTGCCAAGGAAGCTTCTGAGAACATTGCTTATCAGTGGACATACGTTGTAGAAAACCAATATGGAGATGATGGCATGAAAGCTGGTTCTTGTCCAAGCCGTGCAGAATCACCCGCAATGAACACAGAGTCTAGATCATTGGTTCTGGTCAACTACTTTCATTCTGCTCCAAATCGATCTCAGGCCTGCGCTGACAATTCGGCTCCACTACTTGATATGACGAAGACTTGTCATGAAGCAGCCGGCAATCGTTGGGCCAATTTCATTGCTGTTGATTATTACCAAAGGAGTGATGGCGGAGGAGCACCACTAGCCGTTGATGAAGCCAACGGTCATCTCACTTGTGGGTGCGACAACATAGCCTATTGCAAGGAAAACGCTAAGTTTGGCACTTGTGATGTCCCTCCCATTTCTCCACCTCCACCTGCTACAGAAACCCTCTCCACCGGAAACCAGCAGACCCAAAATGATAATCACACAAACAATGCTTATATTGGTAGAACGGCCAAGCTGATGCAATCGGTTGTTGGAATTTTGGCTACGACAACTTTCTTGGCATGGTTATAG
>Glyma01g39410.2 sequence type=predicted peptide gene model=Glyma01g39410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKPIPCLSIRILLLIAICLFTSSSASKIGETCGSDNKCDAGLSCQACPANGNTRTRCSRIQPLSPTSRVKGLPFNRYSWLTTHNSYALAGARSATGSVLVAPMNQEDTVAEQLKNGVRGFMLDMYDFQKDIWLCHSFQSKCFNFTAFQPAINVLKDMRTFLDGNPSEIITIFIEDYVTAPQGLTKVFKDSGLSKYIFPVSRMPKNGGDWPTVDDMVQKNQRLVVFTSKSAKEASENIAYQWTYVVENQYGDDGMKAGSCPSRAESPAMNTESRSLVLVNYFHSAPNRSQACADNSAPLLDMTKTCHEAAGNRWANFIAVDYYQRSDGGGAPLAVDEANGHLTCGCDNIAYCKENAKFGTCDVPPISPPPPATETLSTGNQQTQNDNHTNNAYIGRTAKLMQSVVGILATTTFLAWL* >Glyma01g39410.3 sequence type=predicted peptide gene model=Glyma01g39410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFHFLQSIRILLLIAICLFTSSSASKIGETCGSDNKCDAGLSCQACPANGNTRTRCSRIQPLSPTSRVKGLPFNRYSWLTTHNSYALAGARSATGSVLVAPMNQEDTVAEQLKNGVRGFMLDMYDFQKDIWLCHSFQSKCFNFTAFQPAINVLKDMRTFLDGNPSEIITIFIEDYVTAPQGLTKVFKDSGLSKYIFPVSRMPKNGGDWPTVDDMVQKNQRLVVFTSKSAKEASENIAYQWTYVVENQYGDDGMKAGSCPSRAESPAMNTESRSLVLVNYFHSAPNRSQACADNSAPLLDMTKTCHEAAGNRWANFIAVDYYQRSDGGGAPLAVDEANGHLTCGCDNIAYCKENAKFGTCDVPPISPPPPATETLSTGNQQTQNDNHTNNAYIGRTAKLMQSVVGILATTTFLAWL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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