SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G37040 | AT | Annotation by Michelle Graham. TAIR10: methionine aminopeptidase 1D | chr4:17455175-17457085 FORWARD LENGTH=350 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009987 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular process | SoyBase | N/A | ISS |
| GO:0019408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: dolichol biosynthetic process | SoyBase | N/A | ISS |
| GO:0031365 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein amino acid modification | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004177 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity | SoyBase | N/A | ISS |
| GO:0008235 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloexopeptidase activity | SoyBase | N/A | ISS |
| KOG2738 | KOG | Putative methionine aminopeptidase | JGI | ISS | |
| PTHR10804 | Panther | PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) | JGI | ISS | |
| PTHR10804:SF50 | Panther | METHIONINE AMINOPEPTIDASE 1D, MITOCHONDRIAL | JGI | ISS | |
| PF00557 | PFAM | Metallopeptidase family M24 | JGI | ISS | |
| UniRef100_B9H6F3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Methionine aminopeptidase n=1 Tax=Populus trichocarpa RepID=B9H6F3_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001890CCE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001890CCE related cluster n=1 Tax=unknown RepID=UPI0001890CCE | SoyBase | E_val: 0 | ISS |
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Glyma01g39200 not represented in the dataset |
Glyma01g39200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g06060 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g185300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g39200.1 sequence type=CDS gene model=Glyma01g39200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAGCGGCGCCTCACCGCAACTGCAAATGAGGTTGAAGTCCTCTTTCATCGGAGATCGTCTCTTACGCTGTTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAAGTTTCTCCGCGGCGACAGGTGCCGAAGAATATACCGAGGCCTCCGTATGTGAATTCTATGATTCCTCCAGGGATTGCCAGTGGAGCTGAAGTGCATGACAAGAAAGGGATAGAATGCATGAGAGCTTCTGGAAGGCTTGCAGCGCAGGTTCTTCAATATGCTGGCACCTTAGTTAAGCCAGGCATAACAACAGATGAAATTGACCAAGCAGTTCACCAAATGATAATTGATAATGGTGCATACCCATCTCCTCTCGGCTATGGTAGTTTTCCTAAGAGTGTCTGCACATCTGTAAATGAATGCATTTGCCATGGAATACCAGATTCCCGTGCCCTTGAGGATGGTGATATAATCAACATTGATGTTACTGTTTATCTAAATGGCTATCATGGGGACACATCAGCAACTTTCTATTGTGGAGATGTTGATGATGAAGCTAAAAAACTAGTTCAGGTAACTAAAGAATGCCTAGATAAAGCAATATCAATATGTGCACCAGGAGTGGAGTTCAAGAAAATTGGCAAAACAATTCATGATCATGCAGATAAATATCGTTATGGTGTTGTCCGACAGTTTGTTGGCCATGGAGTTGGAAGTGTTTTTCATGCTGATCCTGTTATTCTTCACTATAGAAACAATGAAAGTGGACGAATGGTGCTAAATCAAACCTTTACAATTGAACCTATGCTGACTATTGGCAGCATCAATCCTGTGATGTGGAATGACGACTGGACAGTTGTAACGGAAGATGGAAGCCTTTCAGCACAGTTTGAACACACCATTCTGATAACACCTGACGGGGCTGAGATTATGACTCAATGCTGA
>Glyma01g39200.1 sequence type=predicted peptide gene model=Glyma01g39200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASGASPQLQMRLKSSFIGDRLLRCSTSRHQPLPQLFRYNPGTKHVSMQLSRTLSGLTNLFFNRRNLDELPNSKRKRLRPGKVSPRRQVPKNIPRPPYVNSMIPPGIASGAEVHDKKGIECMRASGRLAAQVLQYAGTLVKPGITTDEIDQAVHQMIIDNGAYPSPLGYGSFPKSVCTSVNECICHGIPDSRALEDGDIINIDVTVYLNGYHGDTSATFYCGDVDDEAKKLVQVTKECLDKAISICAPGVEFKKIGKTIHDHADKYRYGVVRQFVGHGVGSVFHADPVILHYRNNESGRMVLNQTFTIEPMLTIGSINPVMWNDDWTVVTEDGSLSAQFEHTILITPDGAEIMTQC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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