SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G50620 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:18784993-18786747 REVERSE LENGTH=340 | SoyBase | E_val: 8.00E-166 | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0008146 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sulfotransferase activity | SoyBase | N/A | ISS |
| PF00685 | PFAM | Sulfotransferase domain | JGI | ISS | |
| UniRef100_F4JKP9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: P-loop containing nucleoside triphosphate hydrolase family protein-like protein n=1 Tax=Arabidopsis thaliana RepID=F4JKP9_ARATH | SoyBase | E_val: 1.00E-147 | ISS |
| UniRef100_I1J959 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J959_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma01g39190 not represented in the dataset |
Glyma01g39190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g06080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g185200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g39190.2 sequence type=transcript gene model=Glyma01g39190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCGTCGTTATCATAATCGGAATAGTAAAAGAAAAGAAAAGAAAAGAAAGAAAGAAGAAGATTAATAAAAAAAAGTGTAGTATTCTGGGAGAAAGAGAGAGGAAGAAGAAACAGGGACAATAAGCATAGGGAACTGTGAAGAGCTGAAGGAACCTTTGTTTTTGTTGTTGTTGTTGTTGTTCGTCTGGATTGGGTTGGCTTTAGGGCTTTGAATGCCATCTGGGGTTTTGCTCTCAGGCAATCAAGCTCCAAAGCTGACCCCTTTCTCTCACTTCTAACTCACATACCTTGTTCCATTCTTCACTTTCTCTCTCTAGAACTACAATGGTAGAAGACATGTGTTTCCTCTACAAGGAAATTCTTGTTATGAAGCCTCCAAAGAGATCACCAATGTTGTTAAGGACGGCAGTCATAATATTTTCGATGGTTTGTGGCGTTTTTATCTTCTCTGTATGTCTAAAGCAGATAAGCACCCAAGCTAGGACTACATTTATGGACTTCAAAGTCATTGACAACCATTCTCAGAGTATATTGAAGCTAATGAATACTCACCTACTACATTATCCCAAACCTTCATCCTTTAGCAGGAACGAGTGCGCTCATAATCCTGTATTATTCTTTGCCATATTGTCCAATCAGAGATCTGGTAGTGGGTGGTTTGAGACCCTTTTGAATAGCCACGTTAATGTAAGCTCCTATGGGGAGATATTTTCTGTTAGAGAGAGAAGGCAAAATGTTTCTTCAATTTTGCTGACTTTAGATAAAGTTTACAATTTGGACTGGTTCAATAGTGCTTCCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAGGGATTGGTGGAGCACCATAAGGAAATAGCAGAATATTTCAATCATAGACGTGTTTCAATTATATTTCTTTTCCGGAGAAACTTGCTACGCAGGATGGTATCAATGCTAGCCAATTCATATGATCGTTATGCCAAGCTATTGAATGGAACGCACAAGGCTCATGTACACTCTGCAGAAGAGGCTGAGATTCTTTCGAAGTACAAGCCTATCATAAATTCTACATCATTGCTGGATGACTTGAAAGATATGGAGATGAGATCTGCTAAGGCTTTAGAATACTTCAACAGCACTCGGCATATAATTGTGTACTATGAGGATCTTATGAGAAATCACACTCTAAAAGACGTGCAAGAGTTTTTAGGATTGCCACAGATGGAGTTAACGAGCCGTCACGTTAAGATACATAGAGGACCATTGTCAGACCACATTCAGAACTGGGATGACGTTAACAAGACACTGAAAGGAACCATTTATGAGAGTTTTCTTGAAGCTGACTATTAGTCGTTATCTCTTCTATTCTAACTGCTGGAGAAAGGTGTAAATACCATGCCAACTTTGCTGATCTTTTGCCCCCTCAGGAAAGCCTCAGGGTTCAAAAGTTTTGGTTTTGGTTCTGGAACATTACCTCAGTGTTCTGATGCCTTTTTTTGTCACCACCTCGTGATCAATTAACACCGTTGATAAATGAATGCTTCTTGTTTCTTTGTAGTATTTTTTTTTGTTTTTTCTTCTTTTTTTTTTACCTTTCTTTAGTGAACATGTATATGGCTTTGCCACTAATTGATTTAAGTAAAGACGAGCATTGTTTTGTTCAAACCGGTGTTCAATGATTTGTTTGTTTGTTCAATTTTAACCCAATAGATAGATAATACTTGAGCAAATATGAAATGGCAAGTT >Glyma01g39190.3 sequence type=transcript gene model=Glyma01g39190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCGTCGTTATCATAATCGGAATAGTAAAAGAAAAGAAAAGAAAAGAAAGAAAGAAGAAGATTAATAAAAAAAAGTGTAGTATTCTGGGAGAAAGAGAGAGGAAGAAGAAACAGGGACAATAAGCATAGGGAACTGTGAAGAGCTGAAGGAACCTTTGTTTTTGTTGTTGTTGTTGTTGTTCGTCTGGATTGGGTTGGCTTTAGGGCTTTGAATGCCATCTGGGGTTTTGCTCTCAGGCAATCAAGCTCCAAAGCTGACCCCTTTCTCTCACTTCTAACTCACATACCTTGTTCCATTCTTCACTTTCTCTCTCTAGAACTACAATGGTAGAAGACATGTGTTTCCTCTACAAGGAAATTCTTGTTATGAAGCCTCCAAAGAGATCACCAATGTTGTTAAGGACGGCAGTCATAATATTTTCGATGGTTTGTGGCGTTTTTATCTTCTCTGTATGTCTAAAGCAGATAAGCACCCAAGCTAGGACTACATTTATGGACTTCAAAGTCATTGACAACCATTCTCAGAGTATATTGAAGCTAATGAATACTCACCTACTACATTATCCCAAACCTTCATCCTTTAGCAGGAACGAGTGCGCTCATAATCCTGTATTATTCTTTGCCATATTGTCCAATCAGAGATCTGGTAGTGGGTGGTTTGAGACCCTTTTGAATAGCCACGTTAATGTAAGCTCCTATGGGGAGATATTTTCTGTTAGAGAGAGAAGGCAAAATGTTTCTTCAATTTTGCTGACTTTAGATAAAGTTTACAATTTGGACTGGTTCAATAGTGCTTCCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAGGGATTGGTGGAGCACCATAAGGAAATAGCAGAATATTTCAATCATAGACGTGTTTCAATTATATTTCTTTTCCGGAGAAACTTGCTACGCAGGATGGTATCAATGCTAGCCAATTCATATGATCGTTATGCCAAGCTATTGAATGGAACGCACAAGGCTCATGTACACTCTGCAGAAGAGGCTGAGATTCTTTCGAAGTACAAGCCTATCATAAATTCTACATCATTGCTGGATGACTTGAAAGATATGGAGATGAGATCTGCTAAGGCTTTAGAATACTTCAACAGCACTCGGCATATAATTGTGTACTATGAGGATCTTATGAGAAATCACACTGTACTGAATTTGAGTTTAGCTGAATACTTGTCCCGAAATATGATAACAAAGGAAGAAACTTCAATTTTATTAATGGATTTAGCTCTCCTAAAGTGAAGGGTAACACTTCAGAGAATATAGTTATAAGTGTTGATTAAAAAATGTCAGTTGCTGAGATTTTAACAACTCCATAATTTGTTATACACATACATTTTATCTAGTCTCAATCACCGCTTATAACTGCCTTTTACTCTCTAATACGCACCCCCTTTAGTGAAGTTAATGCTGACATTTTAACCTAGTCCAACCCTGTCTTCTTGCATTCACTTTTATTTCTTCCTAGTTATCACTTTTCATTATATTATGGGATTCACTGTGTGTTTCACGCAGAAGCTAAAAGACGTGCAAGAGTTTTTAGGATTGCCACAGATGGAGTTAACGAGCCGTCACGTTAAGATACATAGAGGACCATTGTCAGACCACATTCAGAACTGGGATGACGTTAACAAGACACTGAAAGGAACCATTTATGAGAGTTTTCTTGAAGCTGACTATTAGTCGTTATCTCTTCTATTCTAACTGCTGGAGAAAGGTGTAAATACCATGCCAACTTTGCTGATCTTTTGCCCCCTCAGGAAAGCCTCAGGGTTCAAAAGTTTTGGTTTTGGTTCTGGAACATTACCTCAGTGTTCTGATGCCTTTTTTTGTCACCACCTCGTGATCAATTAACACCGTTGATAAATGAATGCTTCTTGTTTCTTTGTAGTATTTTTTTTTGTTTTTTCTTCTTTTTTTTTTACCTTTCTTTAGTGAACATGTATATGGCTTTGCCACTAATTGATTTAAGTAAAGACGAGCATTGTTTTGTTCAAACCGGTGTTCAATGATTTGTTTGTTTGTTCAATTTTAACCCAATAGATAGATAATACTTGAGCAAATATGAAATGGCAAGTT
>Glyma01g39190.1 sequence type=CDS gene model=Glyma01g39190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAGAAGACATGTGTTTCCTCTACAAGGAAATTCTTGTTATGAAGCCTCCAAAGAGATCACCAATGTTGTTAAGGACGGCAGTCATAATATTTTCGATGGTTTGTGGCGTTTTTATCTTCTCTGTATGTCTAAAGCAGATAAGCACCCAAGCTAGGACTACATTTATGGACTTCAAAGTCATTGACAACCATTCTCAGAGTATATTGAAGCTAATGAATACTCACCTACTACATTATCCCAAACCTTCATCCTTTAGCAGGAACGAGTGCGCTCATAATCCTGTATTATTCTTTGCCATATTGTCCAATCAGAGATCTGGTAGTGGGTGGTTTGAGACCCTTTTGAATAGCCACGTTAATGTAAGCTCCTATGGGGAGATATTTTCTGTTAGAGAGAGAAGGCAAAATGTTTCTTCAATTTTGCTGACTTTAGATAAAGTTTACAATTTGGACTGGTTCAATAGTGCTTCCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAGGGATTGGTGGAGCACCATAAGGAAATAGCAGAATATTTCAATCATAGACGTGTTTCAATTATATTTCTTTTCCGGAGAAACTTGCTACGCAGGATGGTATCAATGCTAGCCAATTCATATGATCGTTATGCCAAGCTATTGAATGGAACGCACAAGGCTCATGTACACTCTGCAGAAGAGGCTGAGATTCTTTCGAAGTACAAGCCTATCATAAATTCTACATCATTGCTGGATGACTTGAAAGATATGGAGATGAGATCTGCTAAGGCTTTAGAATACTTCAACAGCACTCGGCATATAATTGTGTACTATGAGGATCTTATGAGAAATCACACTAAGCTAAAAGACGTGCAAGAGTTTTTAGGATTGCCACAGATGGAGTTAACGAGCCGTCACGTTAAGATACATAGAGGACCATTGTCAGACCACATTCAGAACTGGGATGACGTTAACAAGACACTGAAAGGAACCATTTATGAGAGTTTTCTTGAAGCTGACTATTAG >Glyma01g39190.2 sequence type=CDS gene model=Glyma01g39190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAGAAGACATGTGTTTCCTCTACAAGGAAATTCTTGTTATGAAGCCTCCAAAGAGATCACCAATGTTGTTAAGGACGGCAGTCATAATATTTTCGATGGTTTGTGGCGTTTTTATCTTCTCTGTATGTCTAAAGCAGATAAGCACCCAAGCTAGGACTACATTTATGGACTTCAAAGTCATTGACAACCATTCTCAGAGTATATTGAAGCTAATGAATACTCACCTACTACATTATCCCAAACCTTCATCCTTTAGCAGGAACGAGTGCGCTCATAATCCTGTATTATTCTTTGCCATATTGTCCAATCAGAGATCTGGTAGTGGGTGGTTTGAGACCCTTTTGAATAGCCACGTTAATGTAAGCTCCTATGGGGAGATATTTTCTGTTAGAGAGAGAAGGCAAAATGTTTCTTCAATTTTGCTGACTTTAGATAAAGTTTACAATTTGGACTGGTTCAATAGTGCTTCCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAGGGATTGGTGGAGCACCATAAGGAAATAGCAGAATATTTCAATCATAGACGTGTTTCAATTATATTTCTTTTCCGGAGAAACTTGCTACGCAGGATGGTATCAATGCTAGCCAATTCATATGATCGTTATGCCAAGCTATTGAATGGAACGCACAAGGCTCATGTACACTCTGCAGAAGAGGCTGAGATTCTTTCGAAGTACAAGCCTATCATAAATTCTACATCATTGCTGGATGACTTGAAAGATATGGAGATGAGATCTGCTAAGGCTTTAGAATACTTCAACAGCACTCGGCATATAATTGTGTACTATGAGGATCTTATGAGAAATCACACTCTAAAAGACGTGCAAGAGTTTTTAGGATTGCCACAGATGGAGTTAACGAGCCGTCACGTTAAGATACATAGAGGACCATTGTCAGACCACATTCAGAACTGGGATGACGTTAACAAGACACTGAAAGGAACCATTTATGAGAGTTTTCTTGAAGCTGACTATTAG >Glyma01g39190.3 sequence type=CDS gene model=Glyma01g39190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAGAAGACATGTGTTTCCTCTACAAGGAAATTCTTGTTATGAAGCCTCCAAAGAGATCACCAATGTTGTTAAGGACGGCAGTCATAATATTTTCGATGGTTTGTGGCGTTTTTATCTTCTCTGTATGTCTAAAGCAGATAAGCACCCAAGCTAGGACTACATTTATGGACTTCAAAGTCATTGACAACCATTCTCAGAGTATATTGAAGCTAATGAATACTCACCTACTACATTATCCCAAACCTTCATCCTTTAGCAGGAACGAGTGCGCTCATAATCCTGTATTATTCTTTGCCATATTGTCCAATCAGAGATCTGGTAGTGGGTGGTTTGAGACCCTTTTGAATAGCCACGTTAATGTAAGCTCCTATGGGGAGATATTTTCTGTTAGAGAGAGAAGGCAAAATGTTTCTTCAATTTTGCTGACTTTAGATAAAGTTTACAATTTGGACTGGTTCAATAGTGCTTCCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAGGGATTGGTGGAGCACCATAAGGAAATAGCAGAATATTTCAATCATAGACGTGTTTCAATTATATTTCTTTTCCGGAGAAACTTGCTACGCAGGATGGTATCAATGCTAGCCAATTCATATGATCGTTATGCCAAGCTATTGAATGGAACGCACAAGGCTCATGTACACTCTGCAGAAGAGGCTGAGATTCTTTCGAAGTACAAGCCTATCATAAATTCTACATCATTGCTGGATGACTTGAAAGATATGGAGATGAGATCTGCTAAGGCTTTAGAATACTTCAACAGCACTCGGCATATAATTGTGTACTATGAGGATCTTATGAGAAATCACACTGTACTGAATTTGAGTTTAGCTGAATACTTGTCCCGAAATATGATAACAAAGGAAGAAACTTCAATTTTATTAATGGATTTAGCTCTCCTAAAGTGA
>Glyma01g39190.1 sequence type=predicted peptide gene model=Glyma01g39190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVEDMCFLYKEILVMKPPKRSPMLLRTAVIIFSMVCGVFIFSVCLKQISTQARTTFMDFKVIDNHSQSILKLMNTHLLHYPKPSSFSRNECAHNPVLFFAILSNQRSGSGWFETLLNSHVNVSSYGEIFSVRERRQNVSSILLTLDKVYNLDWFNSASKNECSAATGLKWMLNQGLVEHHKEIAEYFNHRRVSIIFLFRRNLLRRMVSMLANSYDRYAKLLNGTHKAHVHSAEEAEILSKYKPIINSTSLLDDLKDMEMRSAKALEYFNSTRHIIVYYEDLMRNHTKLKDVQEFLGLPQMELTSRHVKIHRGPLSDHIQNWDDVNKTLKGTIYESFLEADY* >Glyma01g39190.2 sequence type=predicted peptide gene model=Glyma01g39190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVEDMCFLYKEILVMKPPKRSPMLLRTAVIIFSMVCGVFIFSVCLKQISTQARTTFMDFKVIDNHSQSILKLMNTHLLHYPKPSSFSRNECAHNPVLFFAILSNQRSGSGWFETLLNSHVNVSSYGEIFSVRERRQNVSSILLTLDKVYNLDWFNSASKNECSAATGLKWMLNQGLVEHHKEIAEYFNHRRVSIIFLFRRNLLRRMVSMLANSYDRYAKLLNGTHKAHVHSAEEAEILSKYKPIINSTSLLDDLKDMEMRSAKALEYFNSTRHIIVYYEDLMRNHTLKDVQEFLGLPQMELTSRHVKIHRGPLSDHIQNWDDVNKTLKGTIYESFLEADY* >Glyma01g39190.3 sequence type=predicted peptide gene model=Glyma01g39190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVEDMCFLYKEILVMKPPKRSPMLLRTAVIIFSMVCGVFIFSVCLKQISTQARTTFMDFKVIDNHSQSILKLMNTHLLHYPKPSSFSRNECAHNPVLFFAILSNQRSGSGWFETLLNSHVNVSSYGEIFSVRERRQNVSSILLTLDKVYNLDWFNSASKNECSAATGLKWMLNQGLVEHHKEIAEYFNHRRVSIIFLFRRNLLRRMVSMLANSYDRYAKLLNGTHKAHVHSAEEAEILSKYKPIINSTSLLDDLKDMEMRSAKALEYFNSTRHIIVYYEDLMRNHTVLNLSLAEYLSRNMITKEETSILLMDLALLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
