Glyma01g39060 - SoyBase

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Report for Sequence Feature Glyma01g39060

Feature Type:	gene_model
Chromosome:	Gm01
Start:	51032160
stop:	51036122
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g39060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66870	AT	Annotation by Michelle Graham. TAIR10: ASYMMETRIC LEAVES 2-like 1 \| chr5:26706621-26707562 FORWARD LENGTH=313	SoyBase	E_val: 2.00E-73	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009954	GO-bp	Annotation by Michelle Graham. GO Biological Process: proximal/distal pattern formation	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0048441	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03195	PFAM	Protein of unknown function DUF260	JGI		ISS
UniRef100_G7K830	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K830_MEDTR	SoyBase	E_val: 1.00E-120	ISS
UniRef100_I1J947	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J947_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g39060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g39060

Paralog	Evidence	Comments
Glyma11g06210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g39060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g183900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g39060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g39060

Limit To All Plant Sequences

>Glyma01g39060.2   sequence type=transcript   gene model=Glyma01g39060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAGGATTTATTAAGATAGATTTATGAAGAAGGGAAGGGTAGCTGGTCTTGAAAGCTCTTACGCTTGTGGCAGTAGTGCTCAAGAAACTAGAAAACAAACAAACAAAGGCCTTCCTCCTTCTCTATATATCATTCCCCTCTCTTCTCTTTCGTTTTGTCTCTCTCATGTCAATTTCTATCTTCCGTCGCGCCGATCTATTCACAGCTGGTCACAGTAAGTTCTCTTTCTCTCTCTCTCTCTAGCTTGTTATTAACCATTTTTTTTTTTGTTTCTAAAATCACAGGAATTTCGATTATGAGCCACTGATGGATCTCATCTCATCACCTCTTTTCTCCGGCGAAACCCTTCGATTTGTCTTTCGTGTCTTCAAAATTCACCACCACGCAAACAACGCCGTATCCAGATCTACTGGTGCAACTTTTTTTTCTTCTTCTTTTCCTTTTTTTTTTCCCCAAAGAAAATCGCTGAGATTTTCGTCTTTCAAGATTTCGACGTCCTTCTTCTTATTGCGCCAAAGTTATTGATTTTCTCCTTTCCCGTATTTGAATCGTTTATTGGTCATTTTCGTGTCGGTTAATTTCTTGTCGAAAAAAAAAAGAAAGAGGAAGGATTAGGAGACGCTTTTAATGACCTAGATTAGTTTAATAATATCACGTTTGAAATCTGTTTTTAAAATCCGCGATCACGAATCGGAACATGAAGCTTCGTTGAATAATAATCCATTTTGTTATTCTCAATGATTCCTCAATTTCCATGCCTTCTATTTTTATTTTTTTTACAGCTATGGCGATTTAATTATTAGTATTATTCTTATTGTTATCTCCATTTGACTCACTCGCTCTCTCTTGTTTGTTTGCGTAGAAAAATAAAATCAGGTACTGCAGGGTTGTGAAAGCTAGATACTAATTAGATCGCTGAATCGAAGAAAGAGAAACAAACCATAGTACTACTACTAATTTTGATTAGGGATTTGATCTAATATAATATAATTTCACGATTTAATTAACCGCAGAAGCTGCCTCGGTGTGTGAGGGACAAAAGTGAGTGAGAGAGAGAGAGAGAAGAGGAGAGATTGGAAAAGATGTCATCATCATCGAACTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTTCTCAACGAGCTCAGCGCGGCGCAGCGAGACGACGCCGTTAAGTCCCTCGCGTACGAGGCCGAGGCGCGTCTCCGGGACCCCGTCTACGGATGTGTCGGCCTCATCTCCGTCCTCCAACACAAGCTCCGGCAGATCCAGGTCGAACTCAACAATGCAAAGAAAGAACTCGCAACATATATTGGCCCCCAAGCTATTCAAGGAATTCCCGCCCCCATGCTCCAACAACACCCTAACAACCCCTTTCCCGGAGCCATGTATGGGAACATGCCGACTGCGACGGCCGCTGTTCACGGCGGGCAGTTGGTGATTCGCGACGCACAGCCGGCGCCTCAGCAGCAGCAGCAGCAGATCTTGGAGGCGCAGCAGTTGGCTGCCGCTGTGGCGGCGAGGGAACAGCAAGAGATGTTTAGGAGTTACGAACACCAACAGCAGCAGGAGTTTCTAAGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAAGTGTCCCCAGCTGCTGCCTCTGCTGATCAGTTGTCTCCTTCGTTGGCTTTGGGATCATTCGATAACGCTTACCACATGCAGCAACCGCAGCAAGAAGAGCCTCACCATCATCATCATCATCCTCATCACATTCCTCTTGAGGCGCAGCTACTTCTCCCTCCGCAGCAGAAGCAACAAACCCATCATGAGTCGCAACTGCCCCTTCACCAGCAACATTCTGATAACGAGGAGCGTAGGAGTGTTGGTCCATCTTGTTGATTTCCAATTTTGCAGCTCAACGCCTTTGTGTTTTTGAGTCCAACAATTTTCAGCCTAGTTCTACCTGCCGGATACAAATGGACAGCAAAGAGAGAGAGAGGGGGTCGACGAAGCGCACGTGCGTGAGCTAGATTCATTTATCCGCTTCGGTCTGCTAGGCTTTGAAAGGAGACAATTGCAAAAGTAAGATCTTCACCGATCTTGAGGATCTGTTGTCCCTTTTTTCCCCCTCTTAAACTAAAGCAGTAGCTACGTTTTACCTATTTTCTTTTTGTCAAAAACTAAATTGTAAATCAGAATTCAGAATGCTTTTAAAGTCGTGTTTGTCAAATCATTTCTATCACCCTTAGATTTATGTGTGTTTGGATTAACATGCATGATTCATGTTTAATCAAATTTTCATATCACAGTACATCAAAAGTAACCAAAAGTTTTTTTTTTTTAATCCACGTTTGAGTTGGATGGGAATCCAAACACGTTATTATTGTCGTTTAGGTGTGGAAGGAAGATTTGCAACACACTAACTATGTGATACATTT

>Glyma01g39060.3   sequence type=transcript   gene model=Glyma01g39060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAGGATTTATTAAGATAGATTTATGAAGAAGGGAAGGGTAGCTGGTCTTGAAAGCTCTTACGCTTGTGGCAGTAGTGCTCAAGAAACTAGAAAACAAACAAACAAAGGCCTTCCTCCTTCTCTATATATCATTCCCCTCTCTTCTCTTTCGTTTTGTCTCTCTCATGTCAATTTCTATCTTCCGTCGCGCCGATCTATTCACAGCTGGTCACAAAAAATAAAATCAGGTACTGCAGGGTTGTGAAAGCTAGATACTAATTAGATCGCTGAATCGAAGAAAGAGAAACAAACCATAGTACTACTACTAATTTTGATTAGGGATTTGATCTAATATAATATAATTTCACGATTTAATTAACCGCAGAAGCTGCCTCGGTGTGTGAGGGACAAAAGTGAGTGAGAGAGAGAGAGAGAAGAGGAGAGATTGGAAAAGATGTCATCATCATCGAACTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTTCTCAACGAGCTCAGCGCGGCGCAGCGAGACGACGCCGTTAAGTCCCTCGCGTACGAGGCCGAGGCGCGTCTCCGGGACCCCGTCTACGGATGTGTCGGCCTCATCTCCGTCCTCCAACACAAGCTCCGGCAGATCCAGGTCGAACTCAACAATGCAAAGAAAGAACTCGCAACATATATTGGCCCCCAAGCTATTCAAGGAATTCCCGCCCCCATGCTCCAACAACACCCTAACAACCCCTTTCCCGGAGCCATGTATGGGAACATGCCGACTGCGACGGCCGCTGTTCACGGCGGGCAGTTGGTGATTCGCGACGCACAGCCGGCGCCTCAGCAGCAGCAGCAGCAGATCTTGGAGGCGCAGCAGTTGGCTGCCGCTGTGGCGGCGAGGGAACAGCAAGAGATGTTTAGGAGTTACGAACACCAACAGCAGCAGGAGTTTCTAAGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAAGTGTCCCCAGCTGCTGCCTCTGCTGATCAGTTGTCTCCTTCGTTGGCTTTGGGATCATTCGATAACGCTTACCACATGCAGCAACCGCAGCAAGAAGAGCCTCACCATCATCATCATCATCCTCATCACATTCCTCTTGAGGCGCAGCTACTTCTCCCTCCGCAGCAGAAGCAACAAACCCATCATGAGTCGCAACTGCCCCTTCACCAGCAACATTCTGATAACGAGGAGCGTAGGAGTGTTGGTCCATCTTGTTGATTTCCAATTTTGCAGCTCAACGCCTTTGTGTTTTTGAGTCCAACAATTTTCAGCCTAGGTATGTCTTTCTTCCCTTGTAAACAATTTTCCATTGTGGGGTTTCCATTTTATTTTTTTTTTGGCCCCCTTCTTCTGGTGTTAATTCATTATGGCTCTTGTTCACGTGAGTTTTTTTTTTTTTTCTATAACTTTGATGAACTGATCTGTGTTTATGAATGATGATTATTTAATATGCTTTTCTGTGTGAGATTGTAATTATTGGCTAGCTTTTTCATTACGAGGGCAATCTAGTTTGGTGGCAGGAGAAAGCGAATATCAGTCCTCGTGGTAGGAAGTAGAGGGTCGGTTAGAGGAATGGTGTTTTCAAAGTGATAGACGTGTGATCTGGTTCATCAATTATGAGAAGTCAGAAGAGTAAGGAAATGTTAAGTCTAGACAAGTAGGGGAAGGATGAGAAAGATAGCGATAGACGTGAAATCTGATGCAAAATGA

Coding sequences of Glyma01g39060

Limit To All Plant Sequences

>Glyma01g39060.1   sequence type=CDS   gene model=Glyma01g39060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCATCATCGAACTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTTCTCAACGAGCTCAGCGCGGCGCAGCGAGACGACGCCGTTAAGTCCCTCGCGTACGAGGCCGAGGCGCGTCTCCGGGACCCCGTCTACGGATGTGTCGGCCTCATCTCCGTCCTCCAACACAAGCTCCGGCAGATCCAGGTCGAACTCAACAATGCAAAGAAAGAACTCGCAACATATATTGGCCCCCAAGCTATTCAAGGAATTCCCGCCCCCATGCTCCAACAACACCCTAACAACCCCTTTCCCGGAGCCATGTATGGGAACATGCCGACTGCGACGGCCGCTGTTCACGGCGGGCAGTTGGTGATTCGCGACGCACAGCCGGCGCCTCAGCAGCAGCAGCAGCAGATCTTGGAGGCGCAGCAGTTGGCTGCCGCTGTGGCGGCGAGGGAACAGCAAGAGATGTTTAGGAGTTACGAACACCAACAGCAGCAGGAGTTTCTAAGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAAGTGTCCCCAGCTGCTGCCTCTGCTGATCAGTTGTCTCCTTCGTTGGCTTTGGGATCATTCGATAACGCTTACCACATGCAGCAACCGCAGCAAGAAGAGCCTCACCATCATCATCATCATCCTCATCACATTCCTCTTGAGGCGCAGCTACTTCTCCCTCCGCAGCAGAAGCAACAAACCCATCATGAGTCGCAACTGCCCCTTCACCAGCAACATTCTGATAACGAGGAGCGTAGGAGTGTTGGTCCATCTTGTTGA

>Glyma01g39060.2   sequence type=CDS   gene model=Glyma01g39060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCATCATCGAACTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTTCTCAACGAGCTCAGCGCGGCGCAGCGAGACGACGCCGTTAAGTCCCTCGCGTACGAGGCCGAGGCGCGTCTCCGGGACCCCGTCTACGGATGTGTCGGCCTCATCTCCGTCCTCCAACACAAGCTCCGGCAGATCCAGGTCGAACTCAACAATGCAAAGAAAGAACTCGCAACATATATTGGCCCCCAAGCTATTCAAGGAATTCCCGCCCCCATGCTCCAACAACACCCTAACAACCCCTTTCCCGGAGCCATGTATGGGAACATGCCGACTGCGACGGCCGCTGTTCACGGCGGGCAGTTGGTGATTCGCGACGCACAGCCGGCGCCTCAGCAGCAGCAGCAGCAGATCTTGGAGGCGCAGCAGTTGGCTGCCGCTGTGGCGGCGAGGGAACAGCAAGAGATGTTTAGGAGTTACGAACACCAACAGCAGCAGGAGTTTCTAAGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAAGTGTCCCCAGCTGCTGCCTCTGCTGATCAGTTGTCTCCTTCGTTGGCTTTGGGATCATTCGATAACGCTTACCACATGCAGCAACCGCAGCAAGAAGAGCCTCACCATCATCATCATCATCCTCATCACATTCCTCTTGAGGCGCAGCTACTTCTCCCTCCGCAGCAGAAGCAACAAACCCATCATGAGTCGCAACTGCCCCTTCACCAGCAACATTCTGATAACGAGGAGCGTAGGAGTGTTGGTCCATCTTGTTGA

>Glyma01g39060.3   sequence type=CDS   gene model=Glyma01g39060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCATCATCGAACTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTTCTCAACGAGCTCAGCGCGGCGCAGCGAGACGACGCCGTTAAGTCCCTCGCGTACGAGGCCGAGGCGCGTCTCCGGGACCCCGTCTACGGATGTGTCGGCCTCATCTCCGTCCTCCAACACAAGCTCCGGCAGATCCAGGTCGAACTCAACAATGCAAAGAAAGAACTCGCAACATATATTGGCCCCCAAGCTATTCAAGGAATTCCCGCCCCCATGCTCCAACAACACCCTAACAACCCCTTTCCCGGAGCCATGTATGGGAACATGCCGACTGCGACGGCCGCTGTTCACGGCGGGCAGTTGGTGATTCGCGACGCACAGCCGGCGCCTCAGCAGCAGCAGCAGCAGATCTTGGAGGCGCAGCAGTTGGCTGCCGCTGTGGCGGCGAGGGAACAGCAAGAGATGTTTAGGAGTTACGAACACCAACAGCAGCAGGAGTTTCTAAGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAAGTGTCCCCAGCTGCTGCCTCTGCTGATCAGTTGTCTCCTTCGTTGGCTTTGGGATCATTCGATAACGCTTACCACATGCAGCAACCGCAGCAAGAAGAGCCTCACCATCATCATCATCATCCTCATCACATTCCTCTTGAGGCGCAGCTACTTCTCCCTCCGCAGCAGAAGCAACAAACCCATCATGAGTCGCAACTGCCCCTTCACCAGCAACATTCTGATAACGAGGAGCGTAGGAGTGTTGGTCCATCTTGTTGA

Predicted protein sequences of Glyma01g39060

Limit To All Plant Sequences

>Glyma01g39060.1   sequence type=predicted peptide   gene model=Glyma01g39060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELNNAKKELATYIGPQAIQGIPAPMLQQHPNNPFPGAMYGNMPTATAAVHGGQLVIRDAQPAPQQQQQQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGFDVGSASSAGGFSQVSPAAASADQLSPSLALGSFDNAYHMQQPQQEEPHHHHHHPHHIPLEAQLLLPPQQKQQTHHESQLPLHQQHSDNEERRSVGPSC*

>Glyma01g39060.2   sequence type=predicted peptide   gene model=Glyma01g39060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELNNAKKELATYIGPQAIQGIPAPMLQQHPNNPFPGAMYGNMPTATAAVHGGQLVIRDAQPAPQQQQQQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGFDVGSASSAGGFSQVSPAAASADQLSPSLALGSFDNAYHMQQPQQEEPHHHHHHPHHIPLEAQLLLPPQQKQQTHHESQLPLHQQHSDNEERRSVGPSC*

>Glyma01g39060.3   sequence type=predicted peptide   gene model=Glyma01g39060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELNNAKKELATYIGPQAIQGIPAPMLQQHPNNPFPGAMYGNMPTATAAVHGGQLVIRDAQPAPQQQQQQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGFDVGSASSAGGFSQVSPAAASADQLSPSLALGSFDNAYHMQQPQQEEPHHHHHHPHHIPLEAQLLLPPQQKQQTHHESQLPLHQQHSDNEERRSVGPSC*

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