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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66880 | AT | Annotation by Michelle Graham. TAIR10: sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 | chr5:26710697-26712732 FORWARD LENGTH=361 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009739 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus | SoyBase | N/A | ISS |
| GO:0009789 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed germination | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0033 | KOG | Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily | JGI | ISS | |
| KOG0583 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24343 | Panther | SERINE/THREONINE KINASE | JGI | ISS | |
| PTHR24343:SF58 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G7LGB9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase SAPK3 n=1 Tax=Medicago truncatula RepID=G7LGB9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J941 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J941_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g39020 not represented in the dataset |
Glyma01g39020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g06250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g183500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g39020.2 sequence type=transcript gene model=Glyma01g39020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCACTTTACATTACATCACTACAAAGTAAGTGAAGTGAGACACAAGGCAAAATTAAATAAAATAAGCGCCACAGTAAAGAAAACTGTGGGCTCAGCATTTTGGGCAATAAATAATACTCGCAAACACGAAAATGCTGCTTACGAGGCAAACAACCTTAGCCGGCGTCATCCGCAAAACGACGTCGTCACTATCTCTCACAAGTCTTCCTTCCCACTTGCACTCTCTCTCTCTCTCTCTCACTCCCTCACTCACCGGTCGCCGAATCTTTCTCCGCATCCGCAACCACCACCGCCGTATCCTCCTTTGCTTCTTCAACCGATGGATCGGCCGGCGACCGGACCTGGCGTGGACATGCCGATCATGCACGATAGCGACCGCTACGATTTCGTTCGGGATATTGGCTCCGGGAATTTCGGCGTCGCAAGGCTTATGAGGGATAAACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAGATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAGGTTATTTTAACACCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGTGGAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAATGGAAGTGTGTCACCGGGACCTGAAGTTGGAAAACACGTTGTTGGATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGTCTTCCGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATATATTGCTCCAGAAGTATTGCTGAAGCAAGAGTATGATGGCAAGATTGCAGATGTCTGGTCATGTGGAGTAACCTTGTTTGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCTAATGATCCAAAGGATTTCCGGAAGACAATTCAGAGGGTTCTCAGTGTCCAGTATTCCATTCCAGACAATGTTCAAGTATCTCCTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGATAATTTCAGAAGCCACCATACCAGCTGCGGGGACCTATTCTTTAGACCAGTTTATGGCTGATAACATAATAGATGATGACATGGATGAATTAGACTCTGACTTTGAGCTTGATGTAGATAGCAGTGGGGAGATAGTGTATGCCATATAATTTAATCATCGTCTGCATTTTAGAGACAGCATAATGAATGGACAGCATCTTAATATTCAACAGGGCAATCTCCCTTAATTTAATCAAGGAAAGAGAAAGTGTGGAGATCGTATTTCCTGTAAGATTGGATGATACACAAAGTTCATCATGTTAATTTGTATGTTGTATACTTCGTGAACTGCCGAGGGAAGGAACATGATTCTTAGACTCAGAAGGGTTGGTGGCTGAGAAATCATAATTACCCTTTCCTCTTTTCCTGTTGAATACTTGTTTTATATCATATATATACACTAGCCTTTTTGTTGTCTCTTGTCAGTTATATTGGTGTCAGGATTCTTGTTTGCATATACATCAGCCTTGTGACCATTCCTTTAGGAGTTCTTGTGTTTATCCTGTGATCTAGAACATCTCATTCCTGTTCACCATTTCAGTTTATTTTTTGCATATTTTCGTTTCGGCACTGTTGTACCTCTTGTCCTCTTCTGTGCTGCAATGCAAGTCACGAAGCTGTGAATGCTACTAAAAAAGATGTGATAAGATTCTACAATAGTGTACTAGAATGGGGTGGACGGCCTTAGAATTTTATTTCCTGAGCCTGTATTAATCGTCTCGTTGCTTGTGGGTTATATTTCGATCCTTTTATTCCTTAAATTGCC
>Glyma01g39020.1 sequence type=CDS gene model=Glyma01g39020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCGGCCGGCGACCGGACCTGGCGTGGACATGCCGATCATGCACGATAGCGACCGCTACGATTTCGTTCGGGATATTGGCTCCGGGAATTTCGGCGTCGCAAGGCTTATGAGGGATAAACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAGATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAGGTTATTTTAACACCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGTGGAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAATGGAAGTGTGTCACCGGGACCTGAAGTTGGAAAACACGTTGTTGGATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGTCTTCCGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATATATTGCTCCAGAAGTATTGCTGAAGCAAGAGTATGATGGCAAGATTGCAGATGTCTGGTCATGTGGAGTAACCTTGTTTGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCTAATGATCCAAAGGATTTCCGGAAGACAATTCAGAGGGTTCTCAGTGTCCAGTATTCCATTCCAGACAATGTTCAAGTATCTCCTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTTCCTCCTTACTTGATGGATGAAAAGATCATGGGTAACCAATTTGTAGAATCAGATCAGCCCATGCAGAACATTGATACGATCATGCAGATAATTTCAGAAGCCACCATACCAGCTGCGGGGACCTATTCTTTAGACCAGTTTATGGCTGATAACATAATAGATGATGACATGGATGAATTAGACTCTGACTTTGAGCTTGATGTAGATAGCAGTGGGGAGATAGTGTATGCCATATAA >Glyma01g39020.2 sequence type=CDS gene model=Glyma01g39020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCGGCCGGCGACCGGACCTGGCGTGGACATGCCGATCATGCACGATAGCGACCGCTACGATTTCGTTCGGGATATTGGCTCCGGGAATTTCGGCGTCGCAAGGCTTATGAGGGATAAACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAGATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAGGTTATTTTAACACCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGTGGAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAATGGAAGTGTGTCACCGGGACCTGAAGTTGGAAAACACGTTGTTGGATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGTCTTCCGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATATATTGCTCCAGAAGTATTGCTGAAGCAAGAGTATGATGGCAAGATTGCAGATGTCTGGTCATGTGGAGTAACCTTGTTTGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCTAATGATCCAAAGGATTTCCGGAAGACAATTCAGAGGGTTCTCAGTGTCCAGTATTCCATTCCAGACAATGTTCAAGTATCTCCTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGATAATTTCAGAAGCCACCATACCAGCTGCGGGGACCTATTCTTTAGACCAGTTTATGGCTGATAACATAATAGATGATGACATGGATGAATTAGACTCTGACTTTGAGCTTGATGTAGATAGCAGTGGGGAGATAGTGTATGCCATATAA
>Glyma01g39020.1 sequence type=predicted peptide gene model=Glyma01g39020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRPATGPGVDMPIMHDSDRYDFVRDIGSGNFGVARLMRDKQTQELVAVKYIERGDKIDENVKREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFEKICNAGRFNEDEARFFFQQLISGVSYCHAMEVCHRDLKLENTLLDGSPALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLFVMLVGSYPFEDPNDPKDFRKTIQRVLSVQYSIPDNVQVSPECRHLISRIFVFDPAERITIPEILQNEWFLKNLPPYLMDEKIMGNQFVESDQPMQNIDTIMQIISEATIPAAGTYSLDQFMADNIIDDDMDELDSDFELDVDSSGEIVYAI* >Glyma01g39020.2 sequence type=predicted peptide gene model=Glyma01g39020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRPATGPGVDMPIMHDSDRYDFVRDIGSGNFGVARLMRDKQTQELVAVKYIERGDKIDENVKREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFEKICNAGRFNEDEARFFFQQLISGVSYCHAMEVCHRDLKLENTLLDGSPALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLFVMLVGSYPFEDPNDPKDFRKTIQRVLSVQYSIPDNVQVSPECRHLISRIFVFDPAEIISEATIPAAGTYSLDQFMADNIIDDDMDELDSDFELDVDSSGEIVYAI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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