Glyma01g38980 - SoyBase

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Report for Sequence Feature Glyma01g38980

Feature Type:	gene_model
Chromosome:	Gm01
Start:	50956637
stop:	50960580
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g38980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66920	AT	Annotation by Michelle Graham. TAIR10: SKU5 similar 17 \| chr5:26722963-26725370 FORWARD LENGTH=546	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1263	KOG	Multicopper oxidases	JGI		ISS
PTHR11709	Panther	MULTI-COPPER OXIDASE	JGI		ISS
PTHR11709:SF17	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00394	PFAM	Multicopper oxidase	JGI		ISS
PF07731	PFAM	Multicopper oxidase	JGI		ISS
PF07732	PFAM	Multicopper oxidase	JGI		ISS
UniRef100_G7K9E0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: L-ascorbate oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7K9E0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J937	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J937_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g38980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g38980

Paralog	Evidence	Comments
Glyma11g06290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g38980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g183100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g38980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g38980

Limit To All Plant Sequences

>Glyma01g38980.1   sequence type=CDS   gene model=Glyma01g38980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCACTGGTTTGCTACATTTGATATGCCTTGTCATTGCTTTAGTAAGTGTGTCGCTTGTGCAAGCAGAAGATGCGTATAAGTATTTCACATGGACGGTGACTTATGGGACTCTTTATCCCTTGGCTAGTCCCCAGCAGGTTATTCTTATCAATGGTCAGTTTCCTGGGCCTAGACTTGACTTGGTAACTAATGAAAATGTAATTCTCAACCTTATCAACAAGCTGGACGAACCATTTTTACTCACTTGGAACGGTATTAAACAAAGGAAGAATTCATGGCAAGATGGAGTTTTGGGAACCAACTGCCCCATTCCTCCAAACTCAAATTACACATACAAGTTTCAGGCCAAGGATCAGATTGGCACATATACATACTTTCCATCAACTCAACTGCATAAAGCAGCTGGAGGGTTTGGAGCACTCAATGTTTATCACAGATCTGTCATCCCAATCCCTTATCCAAACCCTGATGGAGATTTTACTCTACTCGTTGGTGATTGGTACAAGACCAACCACAAGACACTAAGGCAAACTTTAGATTCTGGAAAATCTCTTGCATTTCCTGATGGCCTCCTTATTAATGGTCAGGCTCATTCTACCTTCACTGGTAACCAGGGGAAAACCTATATGTTTAGGATCTCAAATGTAGGCTTGTCAACCTCAATTAACTTCAGAATTCAGGGTCATACCCTAAAATTAGTTGAGGTTGAAGGATCACACACTGTTCAGAACCTATACGATTCACTTGATGTGCATGTTGGGCAATCAGTTGCAGTGTTAGTAACCTTGAATCAGCCTCCAAAGGACTACTACATTGTTGCCTCAACAAGATTTACCGAGACACCTCTCACTACAACTGCAGTACTACACTATGCAAACTCTTTTTCCTCTGCATTAGGACCCGTGCCTGCTCCCCCCGTTGATAAATATGACTTTGATTGGTCCATGAAGCAAGCTAGAACCTACAGATGGAATCTGACAGCAAATGCTGCTAGGCCTAATCCACAAGGGTCATTCCATTATGGGAAGATTACTCCTACAAAAGTAATTAAGTTGGCCAATTCAGCACCTTTGATCAATGGAAAGCTCCGTTATGCTGTTAACAGTGTCTCATATGTTAACCCTGACACCCCTCTCAAGCTTGCTGATTACTTCAACATTCCCGGAGTCTTCAGTGTGAATTTACTCCAAAACTCTCCCTCAAACGGTCCAGGATACATAGGCACCTCAGTGTTGCAAACTTCTCTCCATGATTTTATTGAGGTTATTTTCCAGAACAACGAAAACACCATGCAATCTTGGCATCTTGATGGTTATGATTTTTGGGTCATTGGTCATGGTTTCGGCCAGTGGACAGATGCTAGCAGAAAAACATATAATCTAGTGGATGCCCTGACTAGACACACTGCACAGGTGTATCCAAAATCCTGGACTACTATATTGGTGTCTTTGGATAACCAAGGCATGTGGAACTTGAGGTCTGCAATATGGGAAAGACAATATCTTGGGCAACAGTTCTATCTTAGAGTGTGGAATGCACAGAAAAGCCTTGCTAATGAATATGACATTCCCAATAATGTTCTGCTTTGTGGCAAAGCTGTTGGACATCACCCTTAG

Predicted protein sequences of Glyma01g38980

Limit To All Plant Sequences

>Glyma01g38980.1   sequence type=predicted peptide   gene model=Glyma01g38980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSTGLLHLICLVIALVSVSLVQAEDAYKYFTWTVTYGTLYPLASPQQVILINGQFPGPRLDLVTNENVILNLINKLDEPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQAKDQIGTYTYFPSTQLHKAAGGFGALNVYHRSVIPIPYPNPDGDFTLLVGDWYKTNHKTLRQTLDSGKSLAFPDGLLINGQAHSTFTGNQGKTYMFRISNVGLSTSINFRIQGHTLKLVEVEGSHTVQNLYDSLDVHVGQSVAVLVTLNQPPKDYYIVASTRFTETPLTTTAVLHYANSFSSALGPVPAPPVDKYDFDWSMKQARTYRWNLTANAARPNPQGSFHYGKITPTKVIKLANSAPLINGKLRYAVNSVSYVNPDTPLKLADYFNIPGVFSVNLLQNSPSNGPGYIGTSVLQTSLHDFIEVIFQNNENTMQSWHLDGYDFWVIGHGFGQWTDASRKTYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNLRSAIWERQYLGQQFYLRVWNAQKSLANEYDIPNNVLLCGKAVGHHP*

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