Glyma01g38970 - SoyBase

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Report for Sequence Feature Glyma01g38970

Feature Type:	gene_model
Chromosome:	Gm01
Start:	50951027
stop:	50952807
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g38970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65590	AT	Annotation by Michelle Graham. TAIR10: Dof-type zinc finger DNA-binding family protein \| chr5:26212084-26213034 REVERSE LENGTH=316	SoyBase	E_val: 1.00E-32	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF02701	PFAM	Dof domain, zinc finger	JGI		ISS
UniRef100_B9S8M1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S8M1_RICCO	SoyBase	E_val: 2.00E-104	ISS
UniRef100_I1J936	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J936_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g38970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g38970

Paralog	Evidence	Comments
Glyma11g06300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g38970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g183000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g38970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g38970

Limit To All Plant Sequences

>Glyma01g38970.1   sequence type=CDS   gene model=Glyma01g38970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCCAAGAACTGTTGGGTGGTGCTAGTGCTAGCCTCATAGCAGGAGAAAGAAAAATCTCCATTACTAACGGAGGAGGAGCACTTCTACTAACACCACCCACTTCATCTTCTCCTTCTCTATCACCTTCTTGCACAACAAGCATAACCACTTCCACCGCCACCGCCACCTCGTCGAATTCAGAGAACCAAAACTTGAGGTGCCCTCGTTGTGATTCATCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGTCACTTCTGCAAAACATGTCGCCGGTACTGGACCAAAGGCGGCGCTCTCAGGAATGTTCCCATCGGTGGTGGCTGCCGGAAAAGCAAAAGCTCCGGCATGTCCAACTCGGTTGCCAAGCAAACCGCCACAAAGATGAAAGCAGTGGCATCAGAGCTTGGAAGGTCGTCGTCACAAGGACTCTTGGACCAAGAGCTTCCACAAACCCCAGCAATCCTGTGGGGTTCTCCACAAAATTCTCAACTGATGGCTTTACTAAGAGCTAACCAAAACCATAACCCTAACCCTAACCCTAGTCCAATGTCAATTGTTGTCAAGGGAGAAGGGAACTTAATGGGATCTCACCACATGGTGGCTGAGCCATTGCTCGCAAATGGGTTGTTGAATCCTAGAACTAGTCTAGGCTTTGATGGTGTGGGAGAAGTACTTCCTTCACTGGGTCTATGCGGCTCTTTTTGGAGGAACAATCAAGATCAGACTCAGCAACAAAACAACGGTTTTGCACTTGGAGAACATCAAAGTAGTGGAGTTCAAGAACTTTACCACAAGCTCAGGTCATCGTCATCATCAATTAATTATTGTGGCAGTGATAACTCACCAGTGTTTCTAAGCAACATGGCTTCTTCTTCCTCTTCTTTGTCCAACATTTTGGAGTCATCTTCAGTTTCTGGGAGTGAATTCGGGTGCTGGAATCCAACCCTTTCCTGGTCTGATCTTCCCACTACCAATGGAGCATATCCTTAA

Predicted protein sequences of Glyma01g38970

Limit To All Plant Sequences

>Glyma01g38970.1   sequence type=predicted peptide   gene model=Glyma01g38970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIQELLGGASASLIAGERKISITNGGGALLLTPPTSSSPSLSPSCTTSITTSTATATSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSSGMSNSVAKQTATKMKAVASELGRSSSQGLLDQELPQTPAILWGSPQNSQLMALLRANQNHNPNPNPSPMSIVVKGEGNLMGSHHMVAEPLLANGLLNPRTSLGFDGVGEVLPSLGLCGSFWRNNQDQTQQQNNGFALGEHQSSGVQELYHKLRSSSSSINYCGSDNSPVFLSNMASSSSSLSNILESSSVSGSEFGCWNPTLSWSDLPTTNGAYP*

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