Glyma01g38530 - SoyBase

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Report for Sequence Feature Glyma01g38530

Feature Type:	gene_model
Chromosome:	Gm01
Start:	50601605
stop:	50607434
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g38530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36850	AT	Annotation by Michelle Graham. TAIR10: PQ-loop repeat family protein / transmembrane family protein \| chr4:17353415-17355822 REVERSE LENGTH=392	SoyBase	E_val: 1.00E-172	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG2913	KOG	Predicted membrane protein	JGI		ISS
PTHR16201	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR16201:SF10	Panther	gb def: unknown protein [arabidopsis thaliana]	JGI		ISS
PF04193	PFAM	PQ loop repeat	JGI		ISS
UniRef100_G7KAU2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein, putative n=1 Tax=Medicago truncatula RepID=G7KAU2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336ECD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336ECD related cluster n=1 Tax=unknown RepID=UPI0002336ECD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g38530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g38530 not represented in the dataset	Glyma01g38530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g38530

Paralog	Evidence	Comments
Glyma11g06770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g38530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g178800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g38530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g38530

Limit To All Plant Sequences

>Glyma01g38530.3   sequence type=transcript   gene model=Glyma01g38530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGAGTAGTACGTAGCATATATGGCTTGAGAGAATATGCCTCACACGTGTAGCAATAAGCAAATTGTGCAATTAAACACCGATAAGGACAACACAGTCCAACCAAGAGGACGCACTTTTTCACAAATTGAATACATATTGTGGCATCTAGTTTGGTAATTTCAGCAGGCTAGCTCTTCCTTTAAAAATAGAAGCAGATAAACCCTCTCTCCAAGTGCAAGGAAAACGAGAGCAATTAAGAAATAATGCCAGAATCGTACTGCGTGAAGGAGAGTAAACCCTGTGTGGGTTGGGTTGAGAAATACTTGGATGATTGTCTCTGCAATTTGAAAGATAAAATCTCCTTTGGCTTTGGCTTCATAAGTCTCGTATGTTGGGGAGTAGCAGAAATTCCTCAGATAATAACCAACTTTCGCGCTAAGTCCAGCCATGGTGTCTCCTTAGCCTTTCTCCTCACTTGGGTCGCTGGCGACATATTCAACCTCCTTGGTTGCCATCTGGAGCCAGCCACGTTGCCAACCCAGTACTACACAGCTCTGCTTTACACAATCACTACGATCGTGTTAGTACTTCAAAGTTTCTATTATGACTACATCTATAAATGGGGCAAGCCTCTTCGGAAGATTAACATCGATGAGGCTCATGAAGAAGAAGAGAAAAAACCTTTGAGACAGAAACCAGGCCGCGACTCTGGGATTCCAATACAAAATGACGGACCCAAAGAAACGCCTCGACGGGATTACTACTATAGGTCAGCGAGATCTTTGGCTGCTAATGATACTCCACCATTTGGTACCTACTTGAGAGCTGCTAAAAGTGTCCCTTCAGCCATGGAAATGAACAATGATTCATCCTCAGATGATGAGGCACCTCCACTCTCTTCTACGAAGCCTGTAACACAGCCTAGACCAATCCCCCGTTCTGTCCCTGCAAGCTATGGAACTTTTCTAGCAGCATCTATGAACTTGCCCCGGCAGGGTAATGCTTTGATGGAGGGATACAAAAGATTCAATGGAAGAAAGCTACTCTCGCAGGAGCACAACATGCACAGTGCTTTGGGTCAATGGTTAGGATGGCTCATGGCTGTTATCTATATGGGTGGCCGGCTTCCTCAAATATGGTTGAATATTAAAAGAGGGAGCGTGGAGGGCTTAAATCCACTCATGTTCATCTTTGCATTGATCGCCAATGCCACTTACGTGGGAAGTATTCTTGTACGAACTATCGAATGGGAAAGTATCAGAGCTAATATGCCATGGCTTTTGGATGCCATTGTTTGCGTGGCATTGGACCTATTCATAATTTTGCAGTATGCCAACTACAGATACGTTCGGAAGAAAACAGGAAGTGATGATGCTGATTATGGAGACTACAAAGAAGCCAGCAAAACTTTTGTGTCTTGATTTGTGGGACTGTAGCCGACACATAATGAAAAATTGAAAACCTTCCACTTCATGTTGCTGTAAGACCGATGGGATTGATGATTTTGTATTAACTCATGTAAGAACAAAGTGATAGCTCGACTGGCCAGGAGGCAAGAGGTGCCAAGGCCTAAGGTAAGGCTTCAGTGTGGCTTGATGTGATCATAGATTACAGGTGTATATGTCTGGATACATCTTTACTTATGCACACATCCAAAGGGATATCAAACGGGTCAACCCGATCCAACTCATTTTTATCTGTTAAAAATGAGTTGGGTTGAGTTAAACTCTGATTAAGTCTCACTTTCTACCATGACTGAATCCTGAATGTAGAAAGACCTCTACAACTTATGTAAAAGGGTCATTTATAGTTGTGTCACTTTTTTGTGTGCGTGTGTGAGAGAGAGACTTTCTCAAATTTTACTTTTATGATTCATAGCATATCTGAAGTTCAGATGTTGCTTCGTGTAATGCAATTACAATGGGACGTAACAAGAAGTAACAATGAAGGGAGATTGCTTTGGGTACCCAACATTTTTGCTGGGACACCCAGCAACCTAGGTGAAAGGGCTAAAATGTCCTTCACCTATTTAATATAAATAGGAACAATGACTCGTCCGTATGAGTCATTGCCTCTCTCGTGCGCGCCGCTTCTTCTTCGTCCTCTGCTTATTCTTTTCTTCTTCCTCTCTACTTCTTTGTTTCTTCTTGTTCCTCCGCTTCACGCACATTGGTGCTTCTTCTCACACTTTCTCACACATGTTGCTACTTCCTCTGGTTCTTCTTCTTCTTCGTGCTTATTTTTGTCACGCACTTTGCTTGATTCATTGTTTTGGTTGATTGAATGTATT

>Glyma01g38530.4   sequence type=transcript   gene model=Glyma01g38530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGAGTAGTACGTAGCATATATGGCTTGAGAGAATATGCCTCACACGTGTAGCAATAAGCAAATTGTGCAATTAAACACCGATAAGGACAACACAGTCCAACCAAGAGGACGCACTTTTTCACAAATTGAATACATATTGTGGCATCTAGTTTGGTAATTTCAGCAGGCTAGCTCTTCCTTTAAAAATAGAAGCAGATAAACCCTCTCTCCAAGTGCAAGGAAAACGAGAGCAATTAAGAAATAATGCCAGAATCGTACTGCGTGAAGGAGAGTAAACCCTGTGTGGGTTGGGTTGAGAAATACTTGGATGATTGTCTCTGCAATTTGAAAGATAAAATCTCCTTTGGCTTTGGCTTCATAAGTCTCGTATGTTGGGGAGTAGCAGAAATTCCTCAGATAATAACCAACTTTCGCGCTAAGTCCAGCCATGGTGTCTCCTTAGCCTTTCTCCTCACTTGGGTCGCTGGCGACATATTCAACCTCCTTGGTTGCCATCTGGAGCCAGCCACGTTGCCAACCCAGTACTACACAGCTCTGCTTTACACAATCACTACGATCGTGTTAGTACTTCAAAGTTTCTATTATGACTACATCTATAAATGGGGCAAGCCTCTTCGGAAGATTAACATCGATGAGGCTCATGAAGAAGAAGAGAAAAAACCTTTGAGACAGAAACCAGGCCGCGACTCTGGGATTCCAATACAAAATGACGGACCCAAAGAAACGCCTCGACGGGATTACTACTATAGGTCAGCGAGATCTTTGGCTGCTAATGATACTCCACCATTTGGTACCTACTTGAGAGCTGCTAAAAGTGTCCCTTCAGCCATGGAAATGAACAATGATTCATCCTCAGATGATGAGGCACCTCCACTCTCTTCTACGAAGCCTGTAACACAGCCTAGACCAATCCCCCGTTCTGTCCCTGCAAGCTATGGAACTTTTCTAGCAGCATCTATGAACTTGCCCCGGCAGGGTAATGCTTTGATGGAGGGATACAAAAGATTCAATGGAAGAAAGCTACTCTCGCAGGAGCACAACATGCACAGTGCTTTGGGTCAATGGTTAGGATGGCTCATGGCTGTTATCTATATGGGTGGCCGGCTTCCTCAAATATGGTTGAATATTAAAAGAGGGAGCGTGGAGGGCTTAAATCCACTCATGTTCATCTTTGCATTGATCGCCAATGCCACTTACGTGGGAAGTATTCTTGTACGAACTATCGAATGGGAAAGTATCAGAGCTAATATGCCATGGCTTTTGGATGCCATTGTTTGCGTGGCATTGGACCTATTCATAATTTTGCAGTATGCCAACTACAGATACGTTCGGAAGAAAACAGGAAGTGATGATGCTGATTATGGAGACTACAAAGAAGCCAGCAAAACTTTTGTGTCTTGATTTGTGGGACTGTAGCCGACACATGTAGGTCTTCCCCATTATGAACCAATATTATACTTCAATTCCACCATGACATTCAGCTATTAGTAAAGGTCTGGCTAGAAAAATGAGGTGGACTAGTTAGGAAACGCTTCTATATATTAGCGTCTTAAAATGTGCTATACGATTACCAGCTATCAATGTAATCAAGTTTATGAATTATGAATCGTTCACGGTTCTTACACCAGCTATATATCAAAGTTATAAAGTTTATGAATTATCAACC

Coding sequences of Glyma01g38530

Limit To All Plant Sequences

>Glyma01g38530.2   sequence type=CDS   gene model=Glyma01g38530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGAATCGTACTGCGTGAAGGAGAGTAAACCCTGTGTGGGTTGGGTTGAGAAATACTTGGATGATTGTCTCTGCAATTTGAAAGATAAAATCTCCTTTGGCTTTGGCTTCATAAGTCTCGTATGTTGGGGAGTAGCAGAAATTCCTCAGATAATAACCAACTTTCGCGCTAAGTCCAGCCATGGTGTCTCCTTAGCCTTTCTCCTCACTTGGGTCGCTGGCGACATATTCAACCTCCTTGGTTGCCATCTGGAGCCAGCCACGTTGCCAACCCAGTACTACACAGCTCTGCTTTACACAATCACTACGATCGTGTTAGTACTTCAAAGTTTCTATTATGACTACATCTATAAATGGGGCAAGCCTCTTCGGAAGATTAACATCGATGAGGCTCATGAAGAAGAAGAGAAAAAACCTTTGAGACAGAAACCAGGCCGCGACTCTGGGATTCCAATACAAAATGACGGACCCAAAGAAACGCCTCGACGGGATTACTACTATAGGTCAGCGAGATCTTTGGCTGCTAATGATACTCCACCATTTGGTACCTACTTGAGAGCTGCTAAAAGTGTCCCTTCAGCCATGGAAATGAACAATGATTCATCCTCAGATGATGAGGCACCTCCACTCTCTTCTACGAAGCCTGTAACACAGCCTAGACCAATCCCCCGTTCTGTCCCTGCAAGCTATGGAACTTTTCTAGCAGCATCTATGAACTTGCCCCGGCAGGGTAATGCTTTGATGGAGGGATACAAAAGATTCAATGGAAGAAAGCTACTCTCGCAGGAGCACAACATGCACAGTGCTTTGGGTCAATGGTTAGGATGGCTCATGGCTGTTATCTATATGGGTGGCCGGCTTCCTCAAATATGGTTGAATATTAAAAGAGGGAGCGTGGAGGGCTTAAATCCACTCATGTTCATCTTTGCATTGATCGCCAATGCCACTTACGTGGGAAGTATTCTTGTACGAACTATCGAATGGGAAAGTATCAGAGCTAATATGCCATGGCTTTTGGATGCCATTGTTTGCGTGGCATTGGACCTATTCGACTATAAAGTTGGTAAACCTCAACAGTGGCAGATAATTTTGCAGTATGCCAACTACAGATACGTTCGGAAGAAAACAGGAAGTGATGATGCTGATTATGGAGACTACAAAGAAGCCAGCAAAACTTTTGTGTCTTGA

>Glyma01g38530.3   sequence type=CDS   gene model=Glyma01g38530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGAATCGTACTGCGTGAAGGAGAGTAAACCCTGTGTGGGTTGGGTTGAGAAATACTTGGATGATTGTCTCTGCAATTTGAAAGATAAAATCTCCTTTGGCTTTGGCTTCATAAGTCTCGTATGTTGGGGAGTAGCAGAAATTCCTCAGATAATAACCAACTTTCGCGCTAAGTCCAGCCATGGTGTCTCCTTAGCCTTTCTCCTCACTTGGGTCGCTGGCGACATATTCAACCTCCTTGGTTGCCATCTGGAGCCAGCCACGTTGCCAACCCAGTACTACACAGCTCTGCTTTACACAATCACTACGATCGTGTTAGTACTTCAAAGTTTCTATTATGACTACATCTATAAATGGGGCAAGCCTCTTCGGAAGATTAACATCGATGAGGCTCATGAAGAAGAAGAGAAAAAACCTTTGAGACAGAAACCAGGCCGCGACTCTGGGATTCCAATACAAAATGACGGACCCAAAGAAACGCCTCGACGGGATTACTACTATAGGTCAGCGAGATCTTTGGCTGCTAATGATACTCCACCATTTGGTACCTACTTGAGAGCTGCTAAAAGTGTCCCTTCAGCCATGGAAATGAACAATGATTCATCCTCAGATGATGAGGCACCTCCACTCTCTTCTACGAAGCCTGTAACACAGCCTAGACCAATCCCCCGTTCTGTCCCTGCAAGCTATGGAACTTTTCTAGCAGCATCTATGAACTTGCCCCGGCAGGGTAATGCTTTGATGGAGGGATACAAAAGATTCAATGGAAGAAAGCTACTCTCGCAGGAGCACAACATGCACAGTGCTTTGGGTCAATGGTTAGGATGGCTCATGGCTGTTATCTATATGGGTGGCCGGCTTCCTCAAATATGGTTGAATATTAAAAGAGGGAGCGTGGAGGGCTTAAATCCACTCATGTTCATCTTTGCATTGATCGCCAATGCCACTTACGTGGGAAGTATTCTTGTACGAACTATCGAATGGGAAAGTATCAGAGCTAATATGCCATGGCTTTTGGATGCCATTGTTTGCGTGGCATTGGACCTATTCATAATTTTGCAGTATGCCAACTACAGATACGTTCGGAAGAAAACAGGAAGTGATGATGCTGATTATGGAGACTACAAAGAAGCCAGCAAAACTTTTGTGTCTTGA

>Glyma01g38530.4   sequence type=CDS   gene model=Glyma01g38530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGAATCGTACTGCGTGAAGGAGAGTAAACCCTGTGTGGGTTGGGTTGAGAAATACTTGGATGATTGTCTCTGCAATTTGAAAGATAAAATCTCCTTTGGCTTTGGCTTCATAAGTCTCGTATGTTGGGGAGTAGCAGAAATTCCTCAGATAATAACCAACTTTCGCGCTAAGTCCAGCCATGGTGTCTCCTTAGCCTTTCTCCTCACTTGGGTCGCTGGCGACATATTCAACCTCCTTGGTTGCCATCTGGAGCCAGCCACGTTGCCAACCCAGTACTACACAGCTCTGCTTTACACAATCACTACGATCGTGTTAGTACTTCAAAGTTTCTATTATGACTACATCTATAAATGGGGCAAGCCTCTTCGGAAGATTAACATCGATGAGGCTCATGAAGAAGAAGAGAAAAAACCTTTGAGACAGAAACCAGGCCGCGACTCTGGGATTCCAATACAAAATGACGGACCCAAAGAAACGCCTCGACGGGATTACTACTATAGGTCAGCGAGATCTTTGGCTGCTAATGATACTCCACCATTTGGTACCTACTTGAGAGCTGCTAAAAGTGTCCCTTCAGCCATGGAAATGAACAATGATTCATCCTCAGATGATGAGGCACCTCCACTCTCTTCTACGAAGCCTGTAACACAGCCTAGACCAATCCCCCGTTCTGTCCCTGCAAGCTATGGAACTTTTCTAGCAGCATCTATGAACTTGCCCCGGCAGGGTAATGCTTTGATGGAGGGATACAAAAGATTCAATGGAAGAAAGCTACTCTCGCAGGAGCACAACATGCACAGTGCTTTGGGTCAATGGTTAGGATGGCTCATGGCTGTTATCTATATGGGTGGCCGGCTTCCTCAAATATGGTTGAATATTAAAAGAGGGAGCGTGGAGGGCTTAAATCCACTCATGTTCATCTTTGCATTGATCGCCAATGCCACTTACGTGGGAAGTATTCTTGTACGAACTATCGAATGGGAAAGTATCAGAGCTAATATGCCATGGCTTTTGGATGCCATTGTTTGCGTGGCATTGGACCTATTCATAATTTTGCAGTATGCCAACTACAGATACGTTCGGAAGAAAACAGGAAGTGATGATGCTGATTATGGAGACTACAAAGAAGCCAGCAAAACTTTTGTGTCTTGA

Predicted protein sequences of Glyma01g38530

Limit To All Plant Sequences

>Glyma01g38530.2   sequence type=predicted peptide   gene model=Glyma01g38530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPESYCVKESKPCVGWVEKYLDDCLCNLKDKISFGFGFISLVCWGVAEIPQIITNFRAKSSHGVSLAFLLTWVAGDIFNLLGCHLEPATLPTQYYTALLYTITTIVLVLQSFYYDYIYKWGKPLRKINIDEAHEEEEKKPLRQKPGRDSGIPIQNDGPKETPRRDYYYRSARSLAANDTPPFGTYLRAAKSVPSAMEMNNDSSSDDEAPPLSSTKPVTQPRPIPRSVPASYGTFLAASMNLPRQGNALMEGYKRFNGRKLLSQEHNMHSALGQWLGWLMAVIYMGGRLPQIWLNIKRGSVEGLNPLMFIFALIANATYVGSILVRTIEWESIRANMPWLLDAIVCVALDLFDYKVGKPQQWQIILQYANYRYVRKKTGSDDADYGDYKEASKTFVS*

>Glyma01g38530.3   sequence type=predicted peptide   gene model=Glyma01g38530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPESYCVKESKPCVGWVEKYLDDCLCNLKDKISFGFGFISLVCWGVAEIPQIITNFRAKSSHGVSLAFLLTWVAGDIFNLLGCHLEPATLPTQYYTALLYTITTIVLVLQSFYYDYIYKWGKPLRKINIDEAHEEEEKKPLRQKPGRDSGIPIQNDGPKETPRRDYYYRSARSLAANDTPPFGTYLRAAKSVPSAMEMNNDSSSDDEAPPLSSTKPVTQPRPIPRSVPASYGTFLAASMNLPRQGNALMEGYKRFNGRKLLSQEHNMHSALGQWLGWLMAVIYMGGRLPQIWLNIKRGSVEGLNPLMFIFALIANATYVGSILVRTIEWESIRANMPWLLDAIVCVALDLFIILQYANYRYVRKKTGSDDADYGDYKEASKTFVS*

>Glyma01g38530.4   sequence type=predicted peptide   gene model=Glyma01g38530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPESYCVKESKPCVGWVEKYLDDCLCNLKDKISFGFGFISLVCWGVAEIPQIITNFRAKSSHGVSLAFLLTWVAGDIFNLLGCHLEPATLPTQYYTALLYTITTIVLVLQSFYYDYIYKWGKPLRKINIDEAHEEEEKKPLRQKPGRDSGIPIQNDGPKETPRRDYYYRSARSLAANDTPPFGTYLRAAKSVPSAMEMNNDSSSDDEAPPLSSTKPVTQPRPIPRSVPASYGTFLAASMNLPRQGNALMEGYKRFNGRKLLSQEHNMHSALGQWLGWLMAVIYMGGRLPQIWLNIKRGSVEGLNPLMFIFALIANATYVGSILVRTIEWESIRANMPWLLDAIVCVALDLFIILQYANYRYVRKKTGSDDADYGDYKEASKTFVS*

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