Glyma01g38490 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma01g38490): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma01g38490): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma01g38490

Feature Type:	gene_model
Chromosome:	Gm01
Start:	50575586
stop:	50578085
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g38490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18630	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF677) \| chr2:8081154-8082496 FORWARD LENGTH=393	SoyBase	E_val: 2.00E-133	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PF05055	PFAM	Protein of unknown function (DUF677)	JGI		ISS
UniRef100_B9RZC5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT14A, putative n=1 Tax=Ricinus communis RepID=B9RZC5_RICCO	SoyBase	E_val: 2.00E-132	ISS
UniRef100_I1J8Z0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J8Z0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g38490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g38490 not represented in the dataset	Glyma01g38490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g38490

Paralog	Evidence	Comments
Glyma11g06811	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g38490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g178400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g38490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g38490

Limit To All Plant Sequences

>Glyma01g38490.2   sequence type=transcript   gene model=Glyma01g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAAAGTCCAAAACCCGTGTGGCTGTGGGGAAAAAAAAACCACAACGCATTTCTGACTCAACCCTCGGTTACACAGTAAAGATGAAGAAGCTGCTTTGAACATTCAATAAGAAAAGGACGCAGCAACCCCCTTTTGGTTTTGCCGAACCACTTCTTCCTTGACTTCTTGCATGGTTCGGGAAATCGCAAAACCCTCACAGAATCAAGTTCATAGCCTTTGTACAATCTTAACACCCACACACCTTTTCTCCCTCAATGCTTCAATTCAAGCTGCAAGCCACTTCCGTGTTTCGTTCTTTTCCCATAATTGGACATCTCAGATTCTTCTCACTCATTTCCTTCACTTTGTAACTGTTTTCTCTGAGGGCATCTATTCAAGTGAGAGACGCCAACGTAATTCTGAAATTTCGACTGAAACTCAGTGTAGGATTGTCTTTTGGGTGCTGGATCTTGTCACATTCAGAGCACTTTTCTTTCTCACATCTCAAAGCCAGGATCTAATTGAGCACTTGAAACTCTGCAATTGTTGGAGTTTGAGACAGTTGGTGATTGATTGTGATCCTATTGTATTTACCCTTCTAATTTTGGAAGTTGGGTTTACTCTTTGATAGGGCTAAAATTGGCTATGATGGGAGGGCAATCCAGCAAGATACCTAGCAATAGTGGTGTTCCAACACCAATCAAAATGGGTACCCATTCTCTGTATGCGGCTGATTTGAACTCTTATGAGGCTGCGTGTGTTGAAGATCCAAACTTGCAATCCTTAGATGCTACCATTCAGGAGCGCACCAACAGGGTGATCACCTCTCTTGCTAATGGGATTGAGGTTCGTTCCATATCCATCGAGTCACTAGGGGAAATGACTGGTAGTTTGCTTGAAATGAATCAGGATGTTGCCAAAGTCATTCTAGAGTGCCAGCAAGATATATGGAACAAGAAGGACAGAGAGCTGTTCTCCCTGGTGGAGGACTTCTTTGAAAATAGCCTCCAGACATTGAACTTCTGCAACGCTCTTGATAAATGCTTGAATCGAGCTCGCGGAAGGCATGTTATAGTTAAGTCTGCGATTACCTGTTTTGAGGAAGAGGTGCAAAATGGGGTTGAAGGGTCCACTTATTTGAAGACTTTGCAAGAGCTTAAGGGTTTCAAGGAAGCCGGGGACCCCTTTACTGAGGAGTTTTATTCCTTGTTTCAGTCAGTTTATCAACAGCAGGCATCAATGCTGAAGAAATTGAAAATTAGGAAGCAAAAGCTTGATAAGAAACTGAAGTCCTTCAAGACATTGAAGAGGGTGTCAAATGCCATTTTTGTGGCTGCTTTCGTGTCTGTTTTGATATTCTCAGTGGTCGCAGCTGCCATTGCTGCACCGCCTGTTGTAACTGCTTTGGCTGGTGCATTGGCTGTTCCAATAGGCTCAGTGGGGAAATGGTGTAACTCTCTGTTTAAGCGATATGAGACAGCTTTAAAGGGCCAAAGAGAACTAATCAGTTCTATGCAAGTTGGTAGTTACATTACATTGGTGGACTTGAAAAACATTCGTTTGCGCATCGACCAATTGGAAATAAAGATAGAGTCCATGTTGCAGAGTTCTGATTTTGCTCTTAGAAATGAGGATGCTGTAAAGTTTGCCATAGATGAGATTAAGAAGAATATAGACATTTTTGCAGAGACCATTGAGGCGTTGAGTAAGCAAGCTGATGAATGTAGTCGGCAGATAAGGATGGCAAGGACAGTGGTTGTGAAAAAGATTATTAATTACACAAACACTAGCTGAAAGTCCTTCGATGCAATTGAACATCCTCTGTGAGACTTTGACTGACTCTGAGATTGGGCAACAATAATGGAATCATGAGAAAATATATATATATATATATATGCAGTTAAAGCACCCTAACTCCTTCAAGTTGGGACTCCGCTTTGTGATGATAAATTCTTTCTTTATTGGCTTCTTACATGTGAGATGCTTTGATAGGATCCTGATGTTTGAGGCATCCACTGACGATAATAGTCGATGCACCTTGTAGGAATCTGATGACCTTTTCTAAGCATTGTTGGATTTGAAGTTGTAATTTTTTATCAGAAGATTCGGCA

Coding sequences of Glyma01g38490

Limit To All Plant Sequences

>Glyma01g38490.1   sequence type=CDS   gene model=Glyma01g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGAGGGCAATCCAGCAAGATACCTAGCAATAGTGGTGTTCCAACACCAATCAAAATGGGTACCCATTCTCTGTATGCGGCTGATTTGAACTCTTATGAGGCTGCGTGTGTTGAAGATCCAAACTTGCAATCCTTAGATGCTACCATTCAGGAGCGCACCAACAGGGTGATCACCTCTCTTGCTAATGGGATTGAGGTTCGTTCCATATCCATCGAGTCACTAGGGGAAATGACTGGTAGTTTGCTTGAAATGAATCAGGATGTTGCCAAAGTCATTCTAGAGTGCCAGCAAGATATATGGAACAAGAAGGACAGAGAGCTGTTCTCCCTGGTGGAGGACTTCTTTGAAAATAGCCTCCAGACATTGAACTTCTGCAACGCTCTTGATAAATGCTTGAATCGAGCTCGCGGAAGGCATGTTATAGTTAAGTCTGCGATTACCTGTTTTGAGGAAGAGGTGCAAAATGGGGTTGAAGGGTCCACTTATTTGAAGACTTTGCAAGAGCTTAAGGGTTTCAAGGAAGCCGGGGACCCCTTTACTGAGGAGTTTTATTCCTTGTTTCAGTCAGTTTATCAACAGCAGGCATCAATGCTGAAGAAATTGAAAATTAGGAAGCAAAAGCTTGATAAGAAACTGAAGTCCTTCAAGACATTGAAGAGGGTGTCAAATGCCATTTTTGTGGCTGCTTTCGTGTCTGTTTTGATATTCTCAGTGGTCGCAGCTGCCATTGCTGCACCGCCTGTTGTAACTGCTTTGGCTGGTGCATTGGCTGTTCCAATAGGCTCAGTGGGGAAATGGTGTAACTCTCTGTTTAAGCGATATGAGACAGCTTTAAAGGGCCAAAGAGAACTAATCAGTTCTATGCAAGTTGGTAGTTACATTACATTGGTGGACTTGAAAAACATTCGTTTGCGCATCGACCAATTGGAAATAAAGATAGAGTCCATGTTGCAGAGTTCTGATTTTGCTCTTAGAAATGAGGATGCTGTAAAGTTTGCCATAGATGAGATTAAGAAGAATATAGACATTTTTGCAGAGACCATTGAGGCGTTGAGTAAGCAAGCTGATGAATGTAGTCGGCAGATAAGGATGGCAAGGACAGTGGTTGTGAAAAAGATTATTAATTACACAAACACTAGCTGA

>Glyma01g38490.2   sequence type=CDS   gene model=Glyma01g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGAGGGCAATCCAGCAAGATACCTAGCAATAGTGGTGTTCCAACACCAATCAAAATGGGTACCCATTCTCTGTATGCGGCTGATTTGAACTCTTATGAGGCTGCGTGTGTTGAAGATCCAAACTTGCAATCCTTAGATGCTACCATTCAGGAGCGCACCAACAGGGTGATCACCTCTCTTGCTAATGGGATTGAGGTTCGTTCCATATCCATCGAGTCACTAGGGGAAATGACTGGTAGTTTGCTTGAAATGAATCAGGATGTTGCCAAAGTCATTCTAGAGTGCCAGCAAGATATATGGAACAAGAAGGACAGAGAGCTGTTCTCCCTGGTGGAGGACTTCTTTGAAAATAGCCTCCAGACATTGAACTTCTGCAACGCTCTTGATAAATGCTTGAATCGAGCTCGCGGAAGGCATGTTATAGTTAAGTCTGCGATTACCTGTTTTGAGGAAGAGGTGCAAAATGGGGTTGAAGGGTCCACTTATTTGAAGACTTTGCAAGAGCTTAAGGGTTTCAAGGAAGCCGGGGACCCCTTTACTGAGGAGTTTTATTCCTTGTTTCAGTCAGTTTATCAACAGCAGGCATCAATGCTGAAGAAATTGAAAATTAGGAAGCAAAAGCTTGATAAGAAACTGAAGTCCTTCAAGACATTGAAGAGGGTGTCAAATGCCATTTTTGTGGCTGCTTTCGTGTCTGTTTTGATATTCTCAGTGGTCGCAGCTGCCATTGCTGCACCGCCTGTTGTAACTGCTTTGGCTGGTGCATTGGCTGTTCCAATAGGCTCAGTGGGGAAATGGTGTAACTCTCTGTTTAAGCGATATGAGACAGCTTTAAAGGGCCAAAGAGAACTAATCAGTTCTATGCAAGTTGGTAGTTACATTACATTGGTGGACTTGAAAAACATTCGTTTGCGCATCGACCAATTGGAAATAAAGATAGAGTCCATGTTGCAGAGTTCTGATTTTGCTCTTAGAAATGAGGATGCTGTAAAGTTTGCCATAGATGAGATTAAGAAGAATATAGACATTTTTGCAGAGACCATTGAGGCGTTGAGTAAGCAAGCTGATGAATGTAGTCGGCAGATAAGGATGGCAAGGACAGTGGTTGTGAAAAAGATTATTAATTACACAAACACTAGCTGA

Predicted protein sequences of Glyma01g38490

Limit To All Plant Sequences

>Glyma01g38490.1   sequence type=predicted peptide   gene model=Glyma01g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGGQSSKIPSNSGVPTPIKMGTHSLYAADLNSYEAACVEDPNLQSLDATIQERTNRVITSLANGIEVRSISIESLGEMTGSLLEMNQDVAKVILECQQDIWNKKDRELFSLVEDFFENSLQTLNFCNALDKCLNRARGRHVIVKSAITCFEEEVQNGVEGSTYLKTLQELKGFKEAGDPFTEEFYSLFQSVYQQQASMLKKLKIRKQKLDKKLKSFKTLKRVSNAIFVAAFVSVLIFSVVAAAIAAPPVVTALAGALAVPIGSVGKWCNSLFKRYETALKGQRELISSMQVGSYITLVDLKNIRLRIDQLEIKIESMLQSSDFALRNEDAVKFAIDEIKKNIDIFAETIEALSKQADECSRQIRMARTVVVKKIINYTNTS*

>Glyma01g38490.2   sequence type=predicted peptide   gene model=Glyma01g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGGQSSKIPSNSGVPTPIKMGTHSLYAADLNSYEAACVEDPNLQSLDATIQERTNRVITSLANGIEVRSISIESLGEMTGSLLEMNQDVAKVILECQQDIWNKKDRELFSLVEDFFENSLQTLNFCNALDKCLNRARGRHVIVKSAITCFEEEVQNGVEGSTYLKTLQELKGFKEAGDPFTEEFYSLFQSVYQQQASMLKKLKIRKQKLDKKLKSFKTLKRVSNAIFVAAFVSVLIFSVVAAAIAAPPVVTALAGALAVPIGSVGKWCNSLFKRYETALKGQRELISSMQVGSYITLVDLKNIRLRIDQLEIKIESMLQSSDFALRNEDAVKFAIDEIKKNIDIFAETIEALSKQADECSRQIRMARTVVVKKIINYTNTS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain