SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36800 | AT | Annotation by Michelle Graham. TAIR10: RUB1 conjugating enzyme 1 | chr4:17341237-17342148 REVERSE LENGTH=184 | SoyBase | E_val: 2.00E-120 | ISS |
| GO:0006301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: postreplication repair | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| GO:0019787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: small conjugating protein ligase activity | SoyBase | N/A | ISS |
| GO:0019788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NEDD8 ligase activity | SoyBase | N/A | ISS |
| KOG0420 | KOG | Ubiquitin-protein ligase | JGI | ISS | |
| PTHR24067 | Panther | UBIQUITIN-CONJUGATING ENZYME E2 | JGI | ISS | |
| PTHR24067:SF17 | Panther | JGI | ISS | ||
| PF00179 | PFAM | Ubiquitin-conjugating enzyme | JGI | ISS | |
| UniRef100_B9SGH9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme m, putative n=1 Tax=Ricinus communis RepID=B9SGH9_RICCO | SoyBase | E_val: 1.00E-127 | ISS |
| UniRef100_C6SV99 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SV99_SOYBN | SoyBase | E_val: 7.00E-134 | ISS |
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Glyma01g38470 not represented in the dataset |
Glyma01g38470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g06830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g178200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g38470.2 sequence type=transcript gene model=Glyma01g38470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCAACTATAATTTACGTTCTTTTCTTTGACTAAAGTTATAATATCAAGTAAGGAAATGTTATAATACATGTAGATTGAACTTGTAAAGAAATGAGGTAGATAAGATAGGAGTATAATACATGCCTATTCTCTGTTGTATTACATCTTTCAGATATAAGTGAGCTGAATCTACCAAAATCATGTACCATGCAATTCCCCAATGGCAAAGATGATCTGATGAACTTTGAAGTTTCAATTCGACCTGATGATGGATATTACTTAGGTGGCACATTTTTGTTTTCCTTTCAAGTGTCTCCCATCTATCCACACGAAGCACCAAAGGTTAAGTGTAAGACAAAGGTCTATCATCCAAATATTGACTTGGAAGGAAATGTTTGTCTCAACATCTTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTTTTCACGGAACCAAATTACGAGGATCCACTGAATCACGATGCCGCTGCTGTGTTGAGAGAGAACCCAAAGATGTTTGAATCTAACGTGAGGAGGGCAATGGCTGGAGGGTATGTCGGGCAAACCTTTTTCCCACGCTGTATTTAGACCTTTTGCACGATACCTTCAAGATCCTGTTCAAATATGTTATCAATGCATGAAGGCCCGTGGTTTGTAAAATTTATCAAAAAATTGGATTTTACTTTCGTCAGTTATGTTATTTTTCTTGGTGGAGAAACAGGCCAAGTTCTTAAGACCACCAAGCTTCAAAAAGCCAAACAAGTGGAATGTTATTGTAACATGTGCTTTAATTGAATGTTAACGTATTATTCTAAAGTGGACCAAGCAGAAAATGAATTCAGCTGTCAATGTTAGCGTTTTGTTTCCCTTGCATTATTTTTGGGCGGGCCTATGCATTTTATGATCAATTCCGGCTCCTCTCCCTCTCACTCTAACTTCCCTCCCCT >Glyma01g38470.3 sequence type=transcript gene model=Glyma01g38470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCAAATCCAATGGCCCAAAACTTTGCTGTAGAGGATTTTGGCTGCAGAGAATCAAAACGCCTTTTTGGGACGAAAGAGAAAATAGAGTTAAAAAGGTTACTACTCAGATTTAGCAGAGCGTAGAGCTGAGCTGCGAAAACCCCCAACTCCAACCTCTGTTCATCGTCTACCGCGCTTTCTTTTCAACCAGAACTATGATTAAGCTTTTTAAAGTAAAGGAAAAGCAGAGAGAACTTGCAGAAAATGCAAGTGGCGGACCACCTGTTAAGAAGCAAAGTGCTGGAGAGTTGCGTCTTCACAAAGATATAAGTGAGCTGAATCTACCAAAATCATGTACCATGCAATTCCCCAATGGCAAAGATGATCTGATGAACTTTGAAGTTTCAATTCGACCTGATGATGGATATTACTTAGGTGGCACATTTTTGTTTTCCTTTCAAGTGTCTCCCATCTATCCACACGAAGCACCAAAGGTTAAGTGTAAGACAAAGGTCTATCATCCAAATATTGACTTGGAAGGAAATGTTTGTCTCAACATCTTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTTTTCACGGTATGCCTTTGGTCTTTTTTATTCTGAATGTTTCCTCCTTCAAATTTTGATAAAATAATATATTCTTCTACTTGGTGTGCAGGAACCAAATTACGAGGATCCACTGAATCACGATGCCGCTGCTGTGTTGAGAGAGAACCCAAAGATGTTTGAATCTAACGTGAGGAGGGCAATGGCTGGAGGGTATGTCGGGCAAACCTTTTTCCCACGCTGTATTTAGACCTTTTGCACGATACCTTCAAGATCCTGTTCAAATATGTTATCAATGCATGAAGGCCCGTGGTTTGTAAAATTTATCAAAAAATTGGATTTTACTTTCGTCAGTTATGTTATTTTTCTTGGTGGAGAAACAGGCCAAGTTCTTAAGACCACCAAGCTTCAAAAAGCCAAACAAGTGGAATGTTATTGTAACATGTGCTTTAATTGAATGTTAACGTATTATTCTAAAGTGGACCAAGCAGAAAATGAATTCAGCTGTCAATGTTAGCGTTTTGTTTCCCTTGCATTATTTTTGGGCGGGCCTATGCATTTTATGATCAATTCCGGCTCCTCTCCCTCTCACTCTAACTTCCCTCCCCT
>Glyma01g38470.1 sequence type=CDS gene model=Glyma01g38470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTAAGCTTTTTAAAGTAAAGGAAAAGCAGAGAGAACTTGCAGAAAATGCAAGTGGCGGACCACCTGTTAAGAAGCAAAGTGCTGGAGAGTTGCGTCTTCACAAAGATATAAGTGAGCTGAATCTACCAAAATCATGTACCATGCAATTCCCCAATGGCAAAGATGATCTGATGAACTTTGAAGTTTCAATTCGACCTGATGATGGATATTACTTAGGTGGCACATTTTTGTTTTCCTTTCAAGTGTCTCCCATCTATCCACACGAAGCACCAAAGGTTAAGTGTAAGACAAAGGTCTATCATCCAAATATTGACTTGGAAGGAAATGTTTGTCTCAACATCTTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTTTTCACGGAACCAAATTACGAGGATCCACTGAATCACGATGCCGCTGCTGTGTTGAGAGAGAACCCAAAGATGTTTGAATCTAACGTGAGGAGGGCAATGGCTGGAGGGTATGTCGGGCAAACCTTTTTCCCACGCTGTATTTAG >Glyma01g38470.2 sequence type=CDS gene model=Glyma01g38470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAATTCCCCAATGGCAAAGATGATCTGATGAACTTTGAAGTTTCAATTCGACCTGATGATGGATATTACTTAGGTGGCACATTTTTGTTTTCCTTTCAAGTGTCTCCCATCTATCCACACGAAGCACCAAAGGTTAAGTGTAAGACAAAGGTCTATCATCCAAATATTGACTTGGAAGGAAATGTTTGTCTCAACATCTTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTTTTCACGGAACCAAATTACGAGGATCCACTGAATCACGATGCCGCTGCTGTGTTGAGAGAGAACCCAAAGATGTTTGAATCTAACGTGAGGAGGGCAATGGCTGGAGGGTATGTCGGGCAAACCTTTTTCCCACGCTGTATTTAG >Glyma01g38470.3 sequence type=CDS gene model=Glyma01g38470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTAAGCTTTTTAAAGTAAAGGAAAAGCAGAGAGAACTTGCAGAAAATGCAAGTGGCGGACCACCTGTTAAGAAGCAAAGTGCTGGAGAGTTGCGTCTTCACAAAGATATAAGTGAGCTGAATCTACCAAAATCATGTACCATGCAATTCCCCAATGGCAAAGATGATCTGATGAACTTTGAAGTTTCAATTCGACCTGATGATGGATATTACTTAGGTGGCACATTTTTGTTTTCCTTTCAAGTGTCTCCCATCTATCCACACGAAGCACCAAAGGTTAAGTGTAAGACAAAGGTCTATCATCCAAATATTGACTTGGAAGGAAATGTTTGTCTCAACATCTTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTTTTCACGGTATGCCTTTGGTCTTTTTTATTCTGA
>Glyma01g38470.1 sequence type=predicted peptide gene model=Glyma01g38470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIKLFKVKEKQRELAENASGGPPVKKQSAGELRLHKDISELNLPKSCTMQFPNGKDDLMNFEVSIRPDDGYYLGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPKMFESNVRRAMAGGYVGQTFFPRCI* >Glyma01g38470.2 sequence type=predicted peptide gene model=Glyma01g38470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQFPNGKDDLMNFEVSIRPDDGYYLGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPKMFESNVRRAMAGGYVGQTFFPRCI* >Glyma01g38470.3 sequence type=predicted peptide gene model=Glyma01g38470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIKLFKVKEKQRELAENASGGPPVKKQSAGELRLHKDISELNLPKSCTMQFPNGKDDLMNFEVSIRPDDGYYLGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTVCLWSFLF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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