Glyma01g38460 - SoyBase

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Report for Sequence Feature Glyma01g38460

Feature Type:	gene_model
Chromosome:	Gm01
Start:	50559470
stop:	50563981
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g38460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36790	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr4:17336360-17338304 FORWARD LENGTH=489	SoyBase	E_val: 0	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
KOG1330	KOG	Sugar transporter/spinster transmembrane protein	JGI		ISS
PTHR24003	Panther	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PR	JGI		ISS
PTHR24003:SF22	Panther		JGI		ISS
PF07690	PFAM	Major Facilitator Superfamily	JGI		ISS
UniRef100_B9SGI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Carbohydrate transporter, putative n=1 Tax=Ricinus communis RepID=B9SGI0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1J8Y5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J8Y5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g38460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g38460

Paralog	Evidence	Comments
Glyma11g06840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g38460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g178100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g38460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g38460

Limit To All Plant Sequences

>Glyma01g38460.1   sequence type=CDS   gene model=Glyma01g38460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACTGAATCGAACTCCAAGACATAACCCTGTTCTTCCAACCAAATCTCCAATTCTCAGTCGTTCACATTCTCGTTCTCAGACCATGAAAACAACACAGATCTTTGGTGTGTCTCTCTCACTCATTCTTATCAACCTGGCTGCTATAATGGAGCGTGCAGATGAAAACCTTCTTCCATCTGTCTACAAAGAAGTTAGTGAAACATTTAATGCTGGACCATCAGATTTGGGTTACCTAACATTCGTAAGGAACTTTGTTCAGGGATTATCATCTCCTCTAGCTGGTATACTTGTTATCAACTATGATCGCCCGACAATTCTTGCCATGGGCACTTTCTGCTGGGCTTTATCTACTGCTGCTGTGGGCGTTTGCCACGATTTTCTGCAGGTTGCATTCTGGAGAGCAATAAATGGCTTTGGCTTGGCAATTGTGATTCCAGCACTCCAGTCTTTCATCGCTGATAGCTACAAGGATGGAGTGAGAGGAACCGGGTTTGGATTGCTGAGTCTCGTTGGTAACTTAGGAGGCATAGGAGGTGGTGTTTTGGCTACTGTCATGGCCGGCCAACAGTTTTGGGGCATACAAGGATGGCGGTGCGCCTTCATTTTGATGGCAACTTTGAGTGCATTAATTGGATTCCTTGTTTTACTATACGTTGTTGACCCAAGAAAAAGATTTCCTACCACACGTGATGCTAGTGAGAGTTCAGACAGGGATGACACTGTCTATAAAGGCAATGCTAGTGCAGCATCAATATGGATAGACTCTTGGGCAGCCACGAAAGCTGTGATCAAAGTGAAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGGTTTTGATAACAATACGTCAGCAACCCTCCTGAGTCTTTTTGCTATTGGATGTGCTATGGGGTCATTCATTGGTGGATCAATAGCTGATCAACTATCACAAGTCTACCCTCATTCTGCTCGTACCATGTGCGCACAATTTAGTGCCTTTATGGGCATTCCATTCTCATGGTTTCTTCTTAAGGTGATCCCTCAGTCAGTAAGTAGTTTTCCTATCTTTTCTGTCACCCTCTTTATAATGGGTCTAACTATCAGCTGGAACGGTGCGGCTGCAAATGCTCCTATGTTTGCTGAGGTTGTCCCTGTAAAACACCGTACCATGATTTATGCATTTGATCGAGCTTTTGAAGGCTCGTTTTCTTCTATTGCGGCTCCTCTGGTTGGGATTCTTTCTGAGAAGATGTTTGGCTATAATTCAAAGTCTGTTGATCCCATCAAAGGATCTTCACCAGAGGCTCTTGCCTTGTCCAAGGGCCTTCTTTCCATGATGGCTGTTCCATTTGGTTTGTGTTGTTTATGCTACACCCCTCTATATTACATATTTAGGCGGGACCGTGAAAATGCTAGAATGCTTGCTGTGAAAGAGGAGGAGATGATGTGA

Predicted protein sequences of Glyma01g38460

Limit To All Plant Sequences

>Glyma01g38460.1   sequence type=predicted peptide   gene model=Glyma01g38460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLNRTPRHNPVLPTKSPILSRSHSRSQTMKTTQIFGVSLSLILINLAAIMERADENLLPSVYKEVSETFNAGPSDLGYLTFVRNFVQGLSSPLAGILVINYDRPTILAMGTFCWALSTAAVGVCHDFLQVAFWRAINGFGLAIVIPALQSFIADSYKDGVRGTGFGLLSLVGNLGGIGGGVLATVMAGQQFWGIQGWRCAFILMATLSALIGFLVLLYVVDPRKRFPTTRDASESSDRDDTVYKGNASAASIWIDSWAATKAVIKVKTFQIIVLQGIIGSLPWTAMVFFTMWFELIGFDNNTSATLLSLFAIGCAMGSFIGGSIADQLSQVYPHSARTMCAQFSAFMGIPFSWFLLKVIPQSVSSFPIFSVTLFIMGLTISWNGAAANAPMFAEVVPVKHRTMIYAFDRAFEGSFSSIAAPLVGILSEKMFGYNSKSVDPIKGSSPEALALSKGLLSMMAVPFGLCCLCYTPLYYIFRRDRENARMLAVKEEEMM*

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