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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G33840 | AT | Annotation by Michelle Graham. TAIR10: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial | chr2:14315011-14317329 FORWARD LENGTH=385 | SoyBase | E_val: 0 | ISS |
| GO:0006418 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation | SoyBase | N/A | ISS |
| GO:0006437 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tyrosyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004812 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0004831 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tyrosine-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG2144 | KOG | Tyrosyl-tRNA synthetase, cytoplasmic | JGI | ISS | |
| PTHR11946 | Panther | ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES | JGI | ISS | |
| PTHR11946:SF34 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00579 | PFAM | tRNA synthetases class I (W and Y) | JGI | ISS | |
| UniRef100_I1J8W9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1J8W9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P93363 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tyrosyl-tRNA synthetase n=1 Tax=Nicotiana tabacum RepID=P93363_TOBAC | SoyBase | E_val: 0 | ISS |
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Glyma01g38320 not represented in the dataset |
Glyma01g38320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g07000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g176800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g38320.2 sequence type=transcript gene model=Glyma01g38320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAATCCCAAAATGAATAAATAAACAATTATTTAAGACACGTACACCCAGGCCATACTCACCCTACCCACTCAGCCTTCTTCTTCGCTCTCTCGCTCTGACTGCCGCCGCCGTGCGTTCGTCTCTCTCTGGCGTTGACTTTTTTTTTTTGCCTGTGAGAGAGTAACGCAATGGAACAACCACCCACCGAAGCCGTCGAATCGTTGTCCGTCTCCGACCCTCAGATCCCCCAATCATCCAATCCCAGTCCAACTCATCTGTAAGTTTCTTTCCCTCACTAACTCCGTTTTCTAGGGTTTCAATTTCATCGTTGAATTTGCCCCCAGTTTGACTCCGGAAGAGAAATTTCAAATTGTGAGAAGCGTCGGAGAAGAATGCATTCAGGAAGACGAACTCCTTAACCTCCTCACCAAAAAACCCGAACCAGTTTGCTACGATGGCTTCGAACCCTCCGGACGAATGCACATTGCTCAGGGTGTTATGAAGACAATCAATGTGAACAAGCTAACTTCTGCCGGTTGCATCGTCAAAATATGGATTGCTGATTGGTTTGCCAAGCTCAACAACAAGATGGGAGGAGATTTGAAGAAAATTGAGACCGTGGGCCGTTACTTGATCGAGATTTGGAAGGCTGTTGGGATGGATCTGGAGAGTGGGAAAGTTGAGTTTCTGTGGTCCTCCAAAGAGATTAACGCCAGAGCTGATGAGTACTGGCCTCTTGTGTTGGATATAGCTCAGAAGAACAATCTTAAAAGGATTATCAGGTGTAGCCAAATAATGGGACGAAGTGAACAGGATGAATTAACTGCTGCTCAGATATTCTATCCATGCATGCAGTGTGCTGACATATTTTTCCTCAAGGCCGACATTTGCCAATTGGGAATGGATCAGCGGAAAGTGAACGTACTTGCCAGAGAGTATTGTGATGACATTAAGAGGAAGAACAAGCCCATTATCTTGTCACACCACATGTTACCTGGTCTTCAGCAAGGGCAAGAAAAGATGTCAAAAAGTGACCCATCATCTTCCATTTTCATGGAAGATGAGGAGGCTGAAGTGAATGTGAAAATAAAAAAGGCTTATTGCCCTCCCAAGACTGTGGAAGGAAACCCATGCTTGGAGTACATTAAATATCTTGTCTTACCTTGGTTTAATGAGTTCACAGTGGAGCGTAGTGCAGATAATGGTGGGAATAAGACTTTCACAAGCTTTGCTGAGCTGACTGCAGCCTATGAAAGTGGAGAGTTACATCCTGGTGACCTTAAACCAGCATTGGCAAAGTCATTGAATAAAATTCTGGAGCCTGTTAGGGAACACTTTAGGAAGGACAGCAATGCTAAAGAGCTACTGAAAAGGGTCAAGGCTTACAGAGTCACCAAATAATATGCTCGTTAAAGACTTCAGGCTAATTTCTATTCTTTGCCAAACAGTCGTTCTTTCACGTTATGAGATTATACACTTCTGGACTTCTAAAATGTGGCGGAGGTTTTCTTTAGAATGAGTAATGTGATTTTTGTTTACTTAAAATATAGATGTGTCTATTTATATTTATATTTTTATTTATGCCATGAATTTTTAATTATCCATAATACAAATACTACCGACTTGCCTAAAA >Glyma01g38320.3 sequence type=transcript gene model=Glyma01g38320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAATCCCAAAATGAATAAATAAACAATTATTTAAGACACGTACACCCAGGCCATACTCACCCTACCCACTCAGCCTTCTTCTTCGCTCTCTCGCTCTGACTGCCGCCGCCGTGCGTTCGTCTCTCTCTGGCGTTGACTTTTTTTTTTTGCCTGTGAGAGAGTAACGCAATGGAACAACCACCCACCGAAGCCGTCGAATCGTTGTCCGTCTCCGACCCTCAGATCCCCCAATCATCCAATCCCAGTCCAACTCATCTTTTGACTCCGGAAGAGAAATTTCAAATTGTGAGAAGCGTCGGAGAAGAATGCATTCAGGAAGACGAACTCCTTAACCTCCTCACCAAAAAACCCGAACCAGTTTGCTACGATGGCTTCGAACCCTCCGGACGAATGCACATTGCTCAGGGTGTTATGAAGACAATCAATGTGAACAAGCTAACTTCTGCCGGTTGCATCGTCAAAATATGGATTGCTGATTGGTTTGCCAAGCTCAACAACAAGATGGGAGGAGATTTGAAGAAAATTGAGACCGTGGGCCGTTACTTGATCGAGATTTGGAAGGCTGTTGGGATGGATCTGGAGAGTGGGAAAGTTGAGTTTCTGTGGTCCTCCAAAGAGATTAACGCCAGAGCTGATGAGTACTGGCCTCTTGTGTTGGATATAGCTCAGAAGAACAATCTTAAAAGGATTATCAGGTGTAGCCAAATAATGGGACGAAGTGAACAGGATGAATTAACTGCTGCTCAGATATTCTATCCATGCATGCAGTGTGCTGACATATTTTTCCTCAAGGCCGACATTTGCCAATTGGGAATGGATCAGCGGAAAGTGAACGTACTTGCCAGAGAGTATTGTGATGACATTAAGAGGAAGAACAAGCCCATTATCTTGTCACACCACATGTTACCTGGTCTTCAGCAAGGGCAAGAAAAGATGTCAAAAAGTGACCCATCATCTTCCATTTTCATGGAAGATGAGGAGGCTGAAGTGAATGTGAAAATAAAAAAGGCTTATTGCCCTCCCAAGACTGTGGAAGGAAACCCATGCTTGGAGTACATTAAATATCTTGTCTTACCTTGGTTTAATGAGTTCACAGTGGAGCGTAGTGCAGATAATGGTGGGAATAAGTAAGTTTTGCTATTTTCCCTCTTTGAACTTCTGACGCCTTTAAAGTAGCAACTTCTTTGGTAATTTTGTTTACCTTTATTCCGTCTTACAATTTTTTTACCTTTTCTTCTGCAAAAATGTTTACTTGATACATGTTCTTTCTTCCATTCAATCTAGGACTTTCACAAGCTTTGCTGAGCTGACTGCAGCCTATGAAAGTGGAGAGTTACATCCTGGTGACCTTAAACCAGCATTGGCAAAGTCATTGAATAAAATTCTGGAGCCTGTTAGGGAACACTTTAGGAAGGACAGCAATGCTAAAGAGCTACTGAAAAGGGTCAAGGCTTACAGAGTCACCAAATAATATGCTCGTTAAAGACTTCAGGCTAATTTCTATTCTTTGCCAAACAGTCGTTCTTTCACGTTATGAGATTATACACTTCTGGACTTCTAAAATGTGGCGGAGGTTTTCTTTAGAATGAGTAATGTGATTTTTGTTTACTTAAAATATAGATGTGTCTATTTATATTTATATTTTTATTTATGCCATGAATTTTTAATTATCCATAATACAAATACTACCGACTTGCCTAAAA
>Glyma01g38320.1 sequence type=CDS gene model=Glyma01g38320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACAACCACCCACCGAAGCCGTCGAATCGTTGTCCGTCTCCGACCCTCAGATCCCCCAATCATCCAATCCCAGTCCAACTCATCTTTTGACTCCGGAAGAGAAATTTCAAATTGTGAGAAGCGTCGGAGAAGAATGCATTCAGGAAGACGAACTCCTTAACCTCCTCACCAAAAAACCCGAACCAGTTTGCTACGATGGCTTCGAACCCTCCGGACGAATGCACATTGCTCAGGGTGTTATGAAGACAATCAATGTGAACAAGCTAACTTCTGCCGGTTGCATCGTCAAAATATGGATTGCTGATTGGTTTGCCAAGCTCAACAACAAGATGGGAGGAGATTTGAAGAAAATTGAGACCGTGGGCCGTTACTTGATCGAGATTTGGAAGGCTGTTGGGATGGATCTGGAGAGTGGGAAAGTTGAGTTTCTGTGGTCCTCCAAAGAGATTAACGCCAGAGCTGATGAGTACTGGCCTCTTGTGTTGGATATAGCTCAGAAGAACAATCTTAAAAGGATTATCAGGTGTAGCCAAATAATGGGACGAAGTGAACAGGATGAATTAACTGCTGCTCAGATATTCTATCCATGCATGCAGTGTGCTGACATATTTTTCCTCAAGGCCGACATTTGCCAATTGGGAATGGATCAGCGGAAAGTGAACGTACTTGCCAGAGAGTATTGTGATGACATTAAGAGGAAGAACAAGCCCATTATCTTGTCACACCACATGTTACCTGGTCTTCAGCAAGGGCAAGAAAAGATGTCAAAAAGTGACCCATCATCTTCCATTTTCATGGAAGATGAGGAGGCTGAAGTGAATGTGAAAATAAAAAAGGCTTATTGCCCTCCCAAGACTGTGGAAGGAAACCCATGCTTGGAGTACATTAAATATCTTGTCTTACCTTGGTTTAATGAGTTCACAGTGGAGCGTAGTGCAGATAATGGTGGGAATAAGACTTTCACAAGCTTTGCTGAGCTGACTGCAGCCTATGAAAGTGGAGAGTTACATCCTGGTGACCTTAAACCAGCATTGGCAAAGTCATTGAATAAAATTCTGGAGCCTGTTAGGGAACACTTTAGGAAGGACAGCAATGCTAAAGAGCTACTGAAAAGGGTCAAGGCTTACAGAGTCACCAAATAA >Glyma01g38320.2 sequence type=CDS gene model=Glyma01g38320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACATTGCTCAGGGTGTTATGAAGACAATCAATGTGAACAAGCTAACTTCTGCCGGTTGCATCGTCAAAATATGGATTGCTGATTGGTTTGCCAAGCTCAACAACAAGATGGGAGGAGATTTGAAGAAAATTGAGACCGTGGGCCGTTACTTGATCGAGATTTGGAAGGCTGTTGGGATGGATCTGGAGAGTGGGAAAGTTGAGTTTCTGTGGTCCTCCAAAGAGATTAACGCCAGAGCTGATGAGTACTGGCCTCTTGTGTTGGATATAGCTCAGAAGAACAATCTTAAAAGGATTATCAGGTGTAGCCAAATAATGGGACGAAGTGAACAGGATGAATTAACTGCTGCTCAGATATTCTATCCATGCATGCAGTGTGCTGACATATTTTTCCTCAAGGCCGACATTTGCCAATTGGGAATGGATCAGCGGAAAGTGAACGTACTTGCCAGAGAGTATTGTGATGACATTAAGAGGAAGAACAAGCCCATTATCTTGTCACACCACATGTTACCTGGTCTTCAGCAAGGGCAAGAAAAGATGTCAAAAAGTGACCCATCATCTTCCATTTTCATGGAAGATGAGGAGGCTGAAGTGAATGTGAAAATAAAAAAGGCTTATTGCCCTCCCAAGACTGTGGAAGGAAACCCATGCTTGGAGTACATTAAATATCTTGTCTTACCTTGGTTTAATGAGTTCACAGTGGAGCGTAGTGCAGATAATGGTGGGAATAAGACTTTCACAAGCTTTGCTGAGCTGACTGCAGCCTATGAAAGTGGAGAGTTACATCCTGGTGACCTTAAACCAGCATTGGCAAAGTCATTGAATAAAATTCTGGAGCCTGTTAGGGAACACTTTAGGAAGGACAGCAATGCTAAAGAGCTACTGAAAAGGGTCAAGGCTTACAGAGTCACCAAATAA >Glyma01g38320.3 sequence type=CDS gene model=Glyma01g38320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACAACCACCCACCGAAGCCGTCGAATCGTTGTCCGTCTCCGACCCTCAGATCCCCCAATCATCCAATCCCAGTCCAACTCATCTTTTGACTCCGGAAGAGAAATTTCAAATTGTGAGAAGCGTCGGAGAAGAATGCATTCAGGAAGACGAACTCCTTAACCTCCTCACCAAAAAACCCGAACCAGTTTGCTACGATGGCTTCGAACCCTCCGGACGAATGCACATTGCTCAGGGTGTTATGAAGACAATCAATGTGAACAAGCTAACTTCTGCCGGTTGCATCGTCAAAATATGGATTGCTGATTGGTTTGCCAAGCTCAACAACAAGATGGGAGGAGATTTGAAGAAAATTGAGACCGTGGGCCGTTACTTGATCGAGATTTGGAAGGCTGTTGGGATGGATCTGGAGAGTGGGAAAGTTGAGTTTCTGTGGTCCTCCAAAGAGATTAACGCCAGAGCTGATGAGTACTGGCCTCTTGTGTTGGATATAGCTCAGAAGAACAATCTTAAAAGGATTATCAGGTGTAGCCAAATAATGGGACGAAGTGAACAGGATGAATTAACTGCTGCTCAGATATTCTATCCATGCATGCAGTGTGCTGACATATTTTTCCTCAAGGCCGACATTTGCCAATTGGGAATGGATCAGCGGAAAGTGAACGTACTTGCCAGAGAGTATTGTGATGACATTAAGAGGAAGAACAAGCCCATTATCTTGTCACACCACATGTTACCTGGTCTTCAGCAAGGGCAAGAAAAGATGTCAAAAAGTGACCCATCATCTTCCATTTTCATGGAAGATGAGGAGGCTGAAGTGAATGTGAAAATAAAAAAGGCTTATTGCCCTCCCAAGACTGTGGAAGGAAACCCATGCTTGGAGTACATTAAATATCTTGTCTTACCTTGGTTTAATGAGTTCACAGTGGAGCGTAGTGCAGATAATGGTGGGAATAAGTAA
>Glyma01g38320.1 sequence type=predicted peptide gene model=Glyma01g38320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQPPTEAVESLSVSDPQIPQSSNPSPTHLLTPEEKFQIVRSVGEECIQEDELLNLLTKKPEPVCYDGFEPSGRMHIAQGVMKTINVNKLTSAGCIVKIWIADWFAKLNNKMGGDLKKIETVGRYLIEIWKAVGMDLESGKVEFLWSSKEINARADEYWPLVLDIAQKNNLKRIIRCSQIMGRSEQDELTAAQIFYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSSIFMEDEEAEVNVKIKKAYCPPKTVEGNPCLEYIKYLVLPWFNEFTVERSADNGGNKTFTSFAELTAAYESGELHPGDLKPALAKSLNKILEPVREHFRKDSNAKELLKRVKAYRVTK* >Glyma01g38320.2 sequence type=predicted peptide gene model=Glyma01g38320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHIAQGVMKTINVNKLTSAGCIVKIWIADWFAKLNNKMGGDLKKIETVGRYLIEIWKAVGMDLESGKVEFLWSSKEINARADEYWPLVLDIAQKNNLKRIIRCSQIMGRSEQDELTAAQIFYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSSIFMEDEEAEVNVKIKKAYCPPKTVEGNPCLEYIKYLVLPWFNEFTVERSADNGGNKTFTSFAELTAAYESGELHPGDLKPALAKSLNKILEPVREHFRKDSNAKELLKRVKAYRVTK* >Glyma01g38320.3 sequence type=predicted peptide gene model=Glyma01g38320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQPPTEAVESLSVSDPQIPQSSNPSPTHLLTPEEKFQIVRSVGEECIQEDELLNLLTKKPEPVCYDGFEPSGRMHIAQGVMKTINVNKLTSAGCIVKIWIADWFAKLNNKMGGDLKKIETVGRYLIEIWKAVGMDLESGKVEFLWSSKEINARADEYWPLVLDIAQKNNLKRIIRCSQIMGRSEQDELTAAQIFYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSSIFMEDEEAEVNVKIKKAYCPPKTVEGNPCLEYIKYLVLPWFNEFTVERSADNGGNK*
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