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Report for Sequence Feature Glyma01g38280
Feature Type: gene_model
Chromosome: Gm01
Start: 50400417
stop: 50410022
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g38280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G63810 AT
Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Nrap protein (InterPro:IPR005554); Has 396 Blast hits to 382 proteins in 182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). | chr1:23669690-23675542 REVERSE LENGTH=1053
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009220 GO-bp
Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2054
KOG
Nucleolar RNA-associated protein (NRAP)
JGI ISS
PTHR17972 Panther
NUCLEOLAR RNA-ASSOCIATED PROTEIN
JGI ISS
PF03813 PFAM
Nrap protein
JGI ISS
UniRef100_G7KDK7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nucleolar protein n=1 Tax=Medicago truncatula RepID=G7KDK7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI00023375D5 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023375D5 related cluster n=1 Tax=unknown RepID=UPI00023375D5
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g38280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g38280
Paralog Evidence Comments
Glyma11g07340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g38280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g176400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g38280
Coding sequences of Glyma01g38280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g38280.1 sequence type=CDS gene model=Glyma01g38280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGCCGACGCTATTGCTGTGGACTCAACGGAGTTAAAGTTGACGGAGCTATTGAAGGAGGTCAACGTAGACCACTCACATCAGTTCTCTAAGCTCGTCGACGACACCGTTTCCGCCATTAAAACCTCCATTGACAAAATCCCCAACGATTTCAAGGTAACTGCTGATTTAGCTTCGCGCTTTGTTACGGACATTGGTGCTGATAAGGTCGAGTTCAAGTTTAAGAAACCAGCGTCTGTTAAGATTGGTGGAAGTTACTCCATACAAAGTATTGCGAAACCTGAAGTTAATGTGGATCTTATTATCAGGTTGCCAAAGGAATGCTTCCATGAGAAGGACTATTTGAATTACAGATATTATGCTAAGAGGTGTCTCTATCTCTGTTTGATGAAAAATTATTTGGAGAAGTCTCCATCTATTGATAGGGTTGAATGGTCCACTCTACAGAATGAAGCCAGAAAACCCTTGCTCGTTGTGTATCCAGCTGCTAAGCTTGTTGAAGTTCCTGGTTTTTTTGTAAGAATTATTCCGTCAGCTAAGGCTATATTTAGCATAGCGAAGTTAAACTTGAAGCGCAGCAACATTCATAATTTGAGTGATGGGACTGCTCTTCTGGCTACACCGAAGTACAATTCTAGTATTTTGGAAGACATGTTTATAGAAGATGTGGAATTTATCAACAACTATTTTCTTGGATGGAAGGAACTAAGAGAGGCTTTAATCCTGCTTAAGGTTTGGGCTCGACAGAGAAGTTCGATACATGTTCACGACTGCCTGAATGGGTTTTTGATTTCCGTCATTTTGGCATATCTTGCTTCTAAGCAACATATTACAAATTCAATGAAATCAACTGAAATAATTCGTATCACGTTGAACTTCATTGCCACCTCAGAGTTGTGGAGTCGAGGTCTCTACTTTCCAAAGGAAGGCCATAGCAATATTACAAAAGAGCAAAGGATGCAACTTAAAGAGTCATTTCCAGTTGTCATATCTCATCCGTTTGGAGGATTCAATTTGGCTTTTCGAATGTCTAGGATTGGTTTTACTCAGCTTCAAAATGAGGCTACTTTGACACTTAGGTGCATGGAAAAGTGTAGAGATGGTGGATTTGAGGAAGTTTTTATGACCAAGATTGACTATGCTGGTAAATATGACTATTGTATGAGAATAAATTTGAAGGGAAAGAAGGAGGTATTTGCATCTGGATTTTGTTTGGACGATGAGTGCTGGAGATCATATGAGGATAAAATACATGGTATTTTGTCTAAAGGGTTGAATGATAGAGCCAAATTCATTCAAGTTACATGGAGAAATACACATTGCCAGTGGAGTGTCGATGATGGCTTGTCGGTACTTGATAAAGTGCCCTTGTTCATAGGAATTTCGGTGAGTACTTTGGAGAAAGCATTTAGGATGGTTGATATTGGCCCAAATGCTGAAAGTAAAGAAGAGGCTCTTGAATTTCGAAAGTTTTGGGGAGAAAAAGCAGAGCTTAGAAGATTTAAAGATGGTAGAATTGCAGAAAGCACAGTATGGGAAATTGAGCAATGGGCGAAGCATCTTATTTTAAAAAGAATAGTTGAGCATGTACTTAGTAGGCATCTTTCTCTGTCCAAGGAAAATATTGTGGTTGTCGTGGATCAACTTGATTTCTCTTTGCTTCATGGTTCTGGAGATCCTATATCATACTCTGGAAATTTGCTTGGGGCATTTGATGTTTTATCAAAGCGTTTGCGTCTTATTGAAGACCTCCCTTTGAAGGTGTCTAGTGTACAGCCTTTAGACTCTGCTTTCAGGTTTACATCAGTCTTCCCTCCTGAACCTCATCATCTAGCAAATGAAAAACATGAATCTCTCAGACTGAATAAGTTAGTTCCATCATGCATTCAACCACTGGAAGTTATGATTCAGCTGGAAGGTTCTGGGAACTGGCCAATGGATGAAATCGCAATTGAAAAAACAAAATCTAGTTTCCTTGTCCAAATTGGAGTGAGTCTTCAAAAGATGTGGGGGATGACATGTACTGCCACTGAGGATAATGTGGATGTGTTGGTGTCTGGATATGCATTTCGTCTAAAAATTTTGCATGAGAGGGGTCTTAGTTTGCTCAACAAGGAAATTGGGAATGATCAAGCTAAGCGGATTCCTTCTGCTGACAAGAAACTTTTTATCCGAAGTCAGCATGCTAACATGATCAATGGGTTACAAAGTCGTTATGCAATATTTGGACCAGTAGTTAGACTTGCAAAACGATGGGCTGCTTCACATCTATTTTCATCCTGCTTGGTAGAGGAGGCTGTTGAGCTATTGGTTGCATATCTTTTTCTTAATCCTTTGCCATATGATGTTCCCTGCTCACGGATCACTGGGTTTTTGAGGTTCCTGCGGTTACTCTCGCACTATGATTGGACTTTCTCTCCGCTGATCGTTGACATAAATCATGACTTGAGCCAAAGTGATGGGAAAGAAATAAATGACAACTTTTTGCTAAGAAGAAAAGGTCAGGGAGAAAATGGACAAAGTGTAGGATCAGCAATGTTCTTAGCTACAGTTTATGATAAAGAATCCGAGGCTTGGACTGGATTATCACCTAGTGGAATGGAACTTAAAAGGTTAGTTGCATATGCCCGAAGCAGTGCCAATTTGTTGGCAAAACTCACATTTCTGGAAGAGATTGGTCCATTTAGATGGGAGTGCCTTTTTAGAACTCCTTTAAACAATTATGATGCAGTAATTTTTCTCCACAAGGACAAACTCCCGTATCCCCAAAGGCTTCTCTTTCCATCAGAAGTTAATCACGGAACACATGTTGCTGAAGGACAGGCCAGCAAGTGTTTCCAACCCTTTTTGTTGCCTAAAGATTTGAAGGGCAGGCCAGAGGAACTTAGAAATAAGTTGCTGGTAGATTTTGATCCATCAAAGTGCTTTATCAGAGATTTAAAGCAAGAGTTCTCAACCACATTCCAAGTATGGCATGATTATCTGGGAGGTGATGTTATTGGCCTAACATGGGGGGAGTCATATCCTTCCAAGAAGCGGAAGCACGAGGAAGTAGTAGTTGAGGAAGAATATAACCCTTGCAAGGTGTTAAAAGCGGTGGGGGAAGTTGGGAAAGGATTTGTGAAGAGTATATATTTTCTGAAGCCCCCAAAGCTCATGAATTAA
Predicted protein sequences of Glyma01g38280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g38280.1 sequence type=predicted peptide gene model=Glyma01g38280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEADAIAVDSTELKLTELLKEVNVDHSHQFSKLVDDTVSAIKTSIDKIPNDFKVTADLASRFVTDIGADKVEFKFKKPASVKIGGSYSIQSIAKPEVNVDLIIRLPKECFHEKDYLNYRYYAKRCLYLCLMKNYLEKSPSIDRVEWSTLQNEARKPLLVVYPAAKLVEVPGFFVRIIPSAKAIFSIAKLNLKRSNIHNLSDGTALLATPKYNSSILEDMFIEDVEFINNYFLGWKELREALILLKVWARQRSSIHVHDCLNGFLISVILAYLASKQHITNSMKSTEIIRITLNFIATSELWSRGLYFPKEGHSNITKEQRMQLKESFPVVISHPFGGFNLAFRMSRIGFTQLQNEATLTLRCMEKCRDGGFEEVFMTKIDYAGKYDYCMRINLKGKKEVFASGFCLDDECWRSYEDKIHGILSKGLNDRAKFIQVTWRNTHCQWSVDDGLSVLDKVPLFIGISVSTLEKAFRMVDIGPNAESKEEALEFRKFWGEKAELRRFKDGRIAESTVWEIEQWAKHLILKRIVEHVLSRHLSLSKENIVVVVDQLDFSLLHGSGDPISYSGNLLGAFDVLSKRLRLIEDLPLKVSSVQPLDSAFRFTSVFPPEPHHLANEKHESLRLNKLVPSCIQPLEVMIQLEGSGNWPMDEIAIEKTKSSFLVQIGVSLQKMWGMTCTATEDNVDVLVSGYAFRLKILHERGLSLLNKEIGNDQAKRIPSADKKLFIRSQHANMINGLQSRYAIFGPVVRLAKRWAASHLFSSCLVEEAVELLVAYLFLNPLPYDVPCSRITGFLRFLRLLSHYDWTFSPLIVDINHDLSQSDGKEINDNFLLRRKGQGENGQSVGSAMFLATVYDKESEAWTGLSPSGMELKRLVAYARSSANLLAKLTFLEEIGPFRWECLFRTPLNNYDAVIFLHKDKLPYPQRLLFPSEVNHGTHVAEGQASKCFQPFLLPKDLKGRPEELRNKLLVDFDPSKCFIRDLKQEFSTTFQVWHDYLGGDVIGLTWGESYPSKKRKHEEVVVEEEYNPCKVLKAVGEVGKGFVKSIYFLKPPKLMN*