SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36630 | AT | Annotation by Michelle Graham. TAIR10: Vacuolar sorting protein 39 | chr4:17272088-17276524 REVERSE LENGTH=1000 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0042732 | GO-bp | Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| KOG2063 | KOG | Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 | JGI | ISS | |
| PTHR12894 | Panther | CNH DOMAIN CONTAINING | JGI | ISS | |
| PTHR12894:SF5 | Panther | VAM6/VPS39 RELATED | JGI | ISS | |
| PF00637 | PFAM | Region in Clathrin and VPS | JGI | ISS | |
| PF00780 | PFAM | CNH domain | JGI | ISS | |
| PF10366 | PFAM | Vacuolar sorting protein 39 domain 1 | JGI | ISS | |
| PF10367 | PFAM | Vacuolar sorting protein 39 domain 2 | JGI | ISS | |
| UniRef100_G7LES7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tubby-like F-box protein n=1 Tax=Medicago truncatula RepID=G7LES7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000189D1BF | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000189D1BF related cluster n=1 Tax=unknown RepID=UPI000189D1BF | SoyBase | E_val: 0 | ISS |
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Glyma01g38240 not represented in the dataset |
Glyma01g38240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g07300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g176000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g38240.1 sequence type=CDS gene model=Glyma01g38240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATTGTGTCCTCCTTTCCAAAAGCCAAGCTCAAGCAAGCTTAAAGTTATGTAAAAAAATAAGGGGGTGTGAGGAAATGGTGCACAGCGCGTACGATTGTCTGGAACTGGTGCGCGAGTGCCCAGCCAAGATCGAATCCATCGAATCCTACGGTTCGAAGCTTCTCGTGGGCTGCTCCGATGGATCGCTCCGAATATTCGCGCCGGAAACGGAATCTTCCTCCGACGGCTCCAAGTCCTACGCCTTGGAGAAGAACCTCGCCGGGTTCGCGAAGAAGCCCGTGCTCTCAATGACGGTGGTGGAGTCGCGAGACTTCCTCATCTCGCTCTCTGAATCCATCGCGTTCCACAGACTCCCTTTCTTCGAGACCATCGCGGTCATCACCAAGGCCAAGGGCGCTAACCTCTTTTGCTGGGACCACCGCCGTGGATTCCTCTGCTTCGCCAGGCAGAAGCGCGTTTGCATCTTCCGACACGACGGTGGCAGGGGATTTGTGGAGGTGAAAGATTTTGGTGTGGCGGATACGGTGAAGTCCATGTGTTGGTGCGGTGAGAATATATGTTTAGGGATTAGAAGAGAATATGTGATTCTGAATGCTTCAAATGGAGCTTTGTCTGAGGTTTTTACTTCTGGAAGACTAGCGCCTCCTCTGGTTGTTTCTCTTCCCTCCGGAGAGCTTCTTCTTGGAAAGGAGAATATTGGGGTTTTTGTTGACCAAAATGGGAAGCTTCTTCCTGAAGGTAGGATTTGTTGGTCAGAAGCTCCTTTGGAAGTGGTAATTCAGAAGCCGTATGCTATAGCTTTGTTGCCCAGATTTGTGGAGATTCGGTCTCTCCGAGCTCCTTATCCCCTGATACAAACAGTTGTTCTTCGAAATGTTCGCCATCTTTGCCAGAGCAATGATTCCACGATACTTGCTTTGGATAATTCTATTCATGGCCTCTTTCCTGTTCCCCTTGGAGCCCAGATAGTCCAATTAACTGCTTCTGGCAACTTTGAGGAGGCCTTGTCATTGTGCAAGCTTCTTCCACCTGAAGATTCAAGTCTTCGTGCTGCAAAGGAGGGTTCAATTCATATAAGATATGCTCACTATCTTTTTGACAATGGGAGCTATGAAGAGGCTATGGAACATTTTCTGGCATCTCAAATAGAAATAACCTATGTGCTTTCCCTGTATCCATCCATTATCCTTCCAAAGACTACTATTGTTCATGATCCGGAGAAGTTGGACATTTATGGGGATGCTTCATATCTCTCCAGAGCTTCTTCAGGTGTGTCAGATGATATGGAACCCCCATCAACATCTCATATGTCAGAATTTGATGAGAGTGCAGCACTTGAATCCAAAAAAATGAACCATAATATGCTTATGGCTCTCATAAAATATTTACAGAAGAAGAGATTTAGTTTTATTGAGAAGGCCACCGCAGAAGGAACTGAAGAAGTTGTTTTAGATGCAGTTGGGGATAACTTTGCATCTTACAATAGGCTTAAGAAAACAAACAAGGGGCGTGGTAATATACCTGTCAGTTCAGGAGCTCGGGAGATGGCTTCAGTATTGGATACTGCTCTACTCCAAGCTTTGCTTCTAACTGGACAGTCTTCAGTGGCTTTAGAATTACTGAGAGGTGTTAACTACTGTGATTTGAAAATATGTGAGGAAATACTTCGGAAAGGCAATCATCATGTTGCTTTATTAGAACTTTTCAAGCACAACTCATTGCACCGGGATGCTCTTGAACTTCTTCACAAATTGGTGGATGAGTCAAAATCTGGCCAGTCTGAAATTACACAAAGATTCAAACCTGAGGATATTGTGGAGTATCTCAAGCCACTATGTGGGACAGACCCCATACTTGTTCTAGAGTTCTCAATGCTTGTTCTTGAAAGCTGTCCATCTCAAACTATAGACCTCTTTCTGTCTGGAAATATTCCAGCAGATATGGTGAGCTCATATTTGAAGAAGCATTCTCCAAACATGCAAGCTAGGTACTTGGAGCTTATGCTTGCAATGAATGAGAATGCAGTATCTGGCAATTTGCAGAATGAAATGGTGCACATCTATCTTTCTGAAGTACTTGATTGGTATGCTGATTTAAGTGCTCAAGAAAAATGGGATGAGAAAGATCATTCCCCAACAAGGAAAAAATTATTGACTGCCTTAGAGAGTATAGCAGGATACAATCCAGAGGCTTTGCTAAAACGTCTTCCACTAGATGCATTGTATGAAGAGCATGCAATATTGTTGGGGAAAATGAACCAACATGATCTGGCATTATCTTTGTATGTTCATAAGCTTAATGCTCCAGAACTGGCATTGTCTTATTGTGATCGGGTCTATGAGTCTATGCATCAGCCATCTTCAAAAAATTCCAGCAACATATACCTTGTACTTTTGCAAATTTATTTGAATCCTCGAAGGACCACAGCAGGTTTCGAAAAGAGAATTACAAATCTATTATCCCCACAGAGTAAAACCATTCCAAAACTTACTCCTACCCCATCCATAAAAAGTAGAGGCCGAGGGTCAAAGAAAATTGCTGCAATAGAGGGTGCAGAGGACACAAAAGTTAGTTTAAGCAGCACTGACAGTGGCAGGAGTGATGGTGATGCAGATGAGTATAATGATGAGGGTGGTTCTACTATCATGCTTGATGAGGTCCTTGATTTGTTGAGCCGCAGGTGGGATAGAATTAATGGAGCTCAGGCCCTTAAACTTTTACCAAAAGAGACGAAATTACAGGATCTACTTTCGTTTCTTGGACCCCTTCTGAGAAAATCTAGTGAAATGTACCGAAATTGTTCGGTGATAAAGAGTTTGAGACAAAGTGAGAACCTTCAGGTGAAAGACAAACTCTACAGTCAGAGGAAAGCAGTTGTGAAGATAACCGGTGATAGCATGTGTTCTCTGTGCCATAAGAAAATAGGGACAAGTGTTTTTGCAGTCTATCCAAATGGTAGCACACTCGTGCACTTTGTCTGTTTCAGAGATTCTCAAAATATGAAAGCAGTGGGCAAAGGGTCTCAATTGAGGAAGCGACTATGA
>Glyma01g38240.1 sequence type=predicted peptide gene model=Glyma01g38240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHCVLLSKSQAQASLKLCKKIRGCEEMVHSAYDCLELVRECPAKIESIESYGSKLLVGCSDGSLRIFAPETESSSDGSKSYALEKNLAGFAKKPVLSMTVVESRDFLISLSESIAFHRLPFFETIAVITKAKGANLFCWDHRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVADTVKSMCWCGENICLGIRREYVILNASNGALSEVFTSGRLAPPLVVSLPSGELLLGKENIGVFVDQNGKLLPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRAPYPLIQTVVLRNVRHLCQSNDSTILALDNSIHGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIHIRYAHYLFDNGSYEEAMEHFLASQIEITYVLSLYPSIILPKTTIVHDPEKLDIYGDASYLSRASSGVSDDMEPPSTSHMSEFDESAALESKKMNHNMLMALIKYLQKKRFSFIEKATAEGTEEVVLDAVGDNFASYNRLKKTNKGRGNIPVSSGAREMASVLDTALLQALLLTGQSSVALELLRGVNYCDLKICEEILRKGNHHVALLELFKHNSLHRDALELLHKLVDESKSGQSEITQRFKPEDIVEYLKPLCGTDPILVLEFSMLVLESCPSQTIDLFLSGNIPADMVSSYLKKHSPNMQARYLELMLAMNENAVSGNLQNEMVHIYLSEVLDWYADLSAQEKWDEKDHSPTRKKLLTALESIAGYNPEALLKRLPLDALYEEHAILLGKMNQHDLALSLYVHKLNAPELALSYCDRVYESMHQPSSKNSSNIYLVLLQIYLNPRRTTAGFEKRITNLLSPQSKTIPKLTPTPSIKSRGRGSKKIAAIEGAEDTKVSLSSTDSGRSDGDADEYNDEGGSTIMLDEVLDLLSRRWDRINGAQALKLLPKETKLQDLLSFLGPLLRKSSEMYRNCSVIKSLRQSENLQVKDKLYSQRKAVVKITGDSMCSLCHKKIGTSVFAVYPNGSTLVHFVCFRDSQNMKAVGKGSQLRKRL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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