Glyma01g37980 - SoyBase

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Report for Sequence Feature Glyma01g37980

Feature Type:	gene_model
Chromosome:	Gm01
Start:	50217119
stop:	50219743
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g37980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36600	AT	Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) protein \| chr4:17263666-17264968 FORWARD LENGTH=353	SoyBase	E_val: 7.00E-12	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0048445	GO-bp	Annotation by Michelle Graham. GO Biological Process: carpel morphogenesis	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B9S6F3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Late embryogenesis abundant, putative n=1 Tax=Ricinus communis RepID=B9S6F3_RICCO	SoyBase	E_val: 4.00E-13	ISS
UniRef100_C6T960	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T960_SOYBN	SoyBase	E_val: 2.00E-111	ISS

Expression Patterns of Glyma01g37980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g37980

Paralog	Evidence	Comments
Glyma11g07370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g37980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma01g37980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g37980

Limit To All Plant Sequences

>Glyma01g37980.2   sequence type=CDS   gene model=Glyma01g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAAGCCAAAGCAGAGGAGGCCAAGCATTTTGCCGCAGAAGCCGTGCATGATGCCGAGGAAGAGACCCGCTCTCTCCAAAAGTTTGGGGGCCGAAGAGGATTATGAAAAACAAGCGACTCAAAACATGAAATATCAAGCTGAAGATGCTGCCTCAAGGGCCACAGAGACAATGAAATCTGCAGCATCAGGAGCCTCGGACTACGCTTCTCAAAAGGCTACGGATGCTAAGGTCATCAAAATGCCAACACATAGCATTAACAATGCAAAAGACACAATGGGAGATACCTACGAGGATGCTAAGCAAAAAATGAACACGGCTTCAGATAAGGTTTCAAGTATGGCTCACAATGCCAAAGATAACATGGAATATGGAAGAGATAGAGCAGCAATGCCTATGACCAGGGACAAAGCAAGTGATGTGTATGGCGAAGCAAGGCATAAAGTGAAAGGAGCAATGGGTTGTGGAGAAGATAAGGCCGTTGATGATGCTAAAGATAACATGGGCGTGAAAATGGAACATGGAAGGGACAAAGTAGCCGAAACTTTTGACCAGGCTAAACGTGAAGTGGGTGAAGCATATGTGTCAGCAAAGAATACAATGACCAAAGAGGCCAAGGCTAAGTACGAGGCTGCAAAGGAGAAAGCTTCAGATGCCACGGGTGATTTAGGAGCTAAGATGAGGAACACCCCAAACCTATAA

Predicted protein sequences of Glyma01g37980

Limit To All Plant Sequences

>Glyma01g37980.2   sequence type=predicted peptide   gene model=Glyma01g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKPKQRRPSILPQKPCMMPRKRPALSKSLGAEEDYEKQATQNMKYQAEDAASRATETMKSAASGASDYASQKATDAKVIKMPTHSINNAKDTMGDTYEDAKQKMNTASDKVSSMAHNAKDNMEYGRDRAAMPMTRDKASDVYGEARHKVKGAMGCGEDKAVDDAKDNMGVKMEHGRDKVAETFDQAKREVGEAYVSAKNTMTKEAKAKYEAAKEKASDATGDLGAKMRNTPNL*

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