Glyma01g37840 - SoyBase

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Report for Sequence Feature Glyma01g37840

Feature Type:	gene_model
Chromosome:	Gm01
Start:	50130999
stop:	50133253
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g37840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75280	AT	Annotation by Michelle Graham. TAIR10: NmrA-like negative transcriptional regulator family protein \| chr1:28252030-28253355 FORWARD LENGTH=310	SoyBase	E_val: 4.00E-142	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF62	Panther	EPIMERASE-RELATED	JGI		ISS
PF05368	PFAM	NmrA-like family	JGI		ISS
UniRef100_I1J8T2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J8T2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SDZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoflavone reductase homolog 1 n=1 Tax=Glycine max RepID=Q9SDZ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g37840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g37840

Paralog	Evidence	Comments
Glyma11g07496	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g37840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g172800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g37840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g37840

Limit To All Plant Sequences

>Glyma01g37840.1   sequence type=CDS   gene model=Glyma01g37840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAAAGAGCAAAATCCTAGTCATTGGAGGAACAGGATACATTGGAAAATTCATAGTTAAGGCAAGCGCAGAAACAGGACACCCCACATTTGTCTTGGTTAGAGACAACACCCTTTCTCATCCTGAAAAGTCTAAACTTGTTGAGAGCTTCAAGAGCTTTGGAGTTACTCTGCTTTATGGTGATCTTACTGATCATGACAGCCTTGTTAAGGCAATCAAGCAAGTTGATGTTGTAATCTCCGCATTAGGTGGACAACAGATAGATGATCAAGTGAAGATCATAGCAGCAATAAAAGAAGCTGGAAACATCAAGAGGTTCCTCCCGTCTGAATTTGGGCTTGACGTGGACCATCACAATGCAGTTGAACCAGTAAGTAGCTTTTTCGAGAAAAAAGTGAAAATCCGGAGGGCTATTGAAGCTGAAAGAATTCCATACACTTACATCACTTCAAATTTATTTGCTGGACACTTCTTACCCAACCTGCTACAACAAAATGTCACAACTCCTCCCCGGGATAAGGTTGTCATTCTAGGAGATGGAAACGTCAAAGGAGTTTATGTTATCGAGGAAGATGTTGCCACTTATACCATAAAAGCAGTGGAAGACCCAAGAACCTTGAACAAAACTGTGTACGTGAGACCCCCTGCCAATATTTTGACCTTCAACGAGCTCGTGTCCTTGTGGGAGTACAAGATTAACAGCACCCTTGACAAAATCTACATTCCCGATGATCAACTTCTTAAGAGCATCCAGGAGTCTCCTTTCCCTGACAATTTCATGTTAGCATTACGCCACTCATTTCTGGTAAAGGGAGATTGTAACTATGAGATTGACCCTTCTTTCGGTGTGGAAGCTTCTAAACTTTATTCTGAGGTGAAATACACTACTGTCGACAACTATTTGAATGCGTTTGTCTGA

Predicted protein sequences of Glyma01g37840

Limit To All Plant Sequences

>Glyma01g37840.1   sequence type=predicted peptide   gene model=Glyma01g37840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAKSKILVIGGTGYIGKFIVKASAETGHPTFVLVRDNTLSHPEKSKLVESFKSFGVTLLYGDLTDHDSLVKAIKQVDVVISALGGQQIDDQVKIIAAIKEAGNIKRFLPSEFGLDVDHHNAVEPVSSFFEKKVKIRRAIEAERIPYTYITSNLFAGHFLPNLLQQNVTTPPRDKVVILGDGNVKGVYVIEEDVATYTIKAVEDPRTLNKTVYVRPPANILTFNELVSLWEYKINSTLDKIYIPDDQLLKSIQESPFPDNFMLALRHSFLVKGDCNYEIDPSFGVEASKLYSEVKYTTVDNYLNAFV*

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