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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66460 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009944 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| PF00150 | PFAM | Cellulase (glycosyl hydrolase family 5) | JGI | ISS | |
| UniRef100_G7KF03 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mannan endo-1,4-beta-mannosidase n=1 Tax=Medicago truncatula RepID=G7KF03_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J8S1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J8S1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g37720 not represented in the dataset |
Glyma01g37720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g07580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g171900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g37720.2 sequence type=transcript gene model=Glyma01g37720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AACTCCCTTTTTCACTTTTCAGGTTCTAGCAACTGCCAAAGTGCTGTTTTTTCCCTCATCATCTCTATATCACTAAGCATATAAACAACAAGAGAACACTCCATAATATACTCCATAGTCCAGTGTGTGTAAGAGACAGAACAACAGATGAAGCATTTTGCCTTGGTGTTTCTTTTGGCCATTTTGGTCCCTCAGGAGTGTTTCCATGTCAGTGTGGAAGCAAGGGATGATTTTGTCAGAACTAGAGGCATCCACTTCATGCTGAATGGATACCCTTACTATGCAAATGGCTTCAATGCCTACTGGTTAATGTACACAGCTTCTGACCCATCTCAGAGATTCAAGGTTTCAAATGCCTTTAGAGAAGCAGCAAGTCATGGCCTTACTGTTGCTAGAACTTGGGCCTTCAGTGATGGTGGCTATAGACCACTACAATATTCCCCTGGCTTCTATAATGAACAAATGTTCACGGGGTTAGATTTCGTTGTATCAGAGGCCAGAAAGTACGGGATTAAGCTCATACTGAGCTTGGTGAACAACTACGAAAATTTTGGAGGCAAGAAGCAGTATGTGAACTGGGCTAGAAGTCACGGCCAGTACCTTACTTCAGATGATGATTTCTTTAGGAGCCCTGTTGTTAAGGGTTACTACATGAACCATGTCAGGACTGTTCTCAACAGATACAACAGATTTACTGGTATGCATTACAAAGATGACCCAACAATCATGGCCTGGGAGCTTATGAATGAACCTAGATGCACATCGGATCCTTCAGGAAGGACTATTCAGGCGTGGATCACGGAAATGGCTTCGTTTTTGAAGTCCATAGACAGGAACCACTTATTGGAAGCTGGACTAGAAGGGTTTTACGGACAATCAACACCACAAAGAAAAACAATGAATCCCGGTTTCAACATAGGGACAGACTTCATCGCAAATAACCGAATCCCGGCCATTGATTTTGCAACAGTCCACTGCTACCCCGACCAATGGGTATCGAGCTCAAATATTCAGTACCAGCTTTCATTCTTGAACAACTGGTTGAGTGCCCACTTCATAGACGCGCAATACCATATAAAGAAACCAATACTGGTGGCAGAATTTGGGAAATCATTTAAGGGTTCGAGTTCCTACGAGAGGGATGAGGTGTTCAATTCAGTGTATTACAAAATATACGCTTCTGCAAAGAGAGGAGGTGCAGCGAGTGGAGCACTGTTCTGGCAGCTTCTAACGGAGGGCATGGAGTCTTTCCAAGACGGTTACGGAATCATTCTTGGGCAGAGTTCCTCTACGGCCAATCTCATTGCTCGCCAGTCCCGCAAGCTGTACCTGATTCGGAAGATCTTCGCAAGGGTCGCGAACATGCGGCGATGGCAAAGGGCCAGAGCCAGAGGATTTTCTGGCTCCGGAGGTGGAAACGGAGGCAGATACATTGACAACTGAGAACATGTTTGGTTTGCAGTTTCAGGATTTTATCTGTTAAATTTACATTGAAGCGCGCGTCACAGTATTTTTAACTGAAAAGCTTGTTTGTGTTGGGAAGACAGACATCTTTCATATACGAGTTTCTCTACCGAGTGTTTGGAAGGCGATGGAGGAGGGCCCACCGGAACCAACGGAATACCTTGGAGATGAATCATAATGTTTTCTTATAACTACGTTGACATATGTTTTCATTGTTTCAGCTTCTCTCTCTTTTTTTTGTTTATACAGAGCAAAGCAGCTGGTAAGTTTTTCCATGGCGTCTACTTGTAGGTTACTCAACCTCACTTTAGTTTTTAACTTTGGAAAGAATGTTATTTGTGTTTAGTACTTGATATCTGTAGAAAAAGAATGCAAAACAAAGCGCAAATGTAAGTTTGAATCAAAATAAGTTATAAACTCAAGTTTATACTAACATGATTTATGTTTAGATTT
>Glyma01g37720.1 sequence type=CDS gene model=Glyma01g37720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCATTTTGCCTTGGTGTTTCTTTTGGCCATTTTGGTCCCTCAGGAGTGTTTCCATGTCAGTGTGGAAGCAAGGGATGATTTTGTCAGAACTAGAGGCATCCACTTCATGCTGAATGGATACCCTTACTATGCAAATGGCTTCAATGCCTACTGGTTAATGTACACAGCTTCTGACCCATCTCAGAGATTCAAGGTTTCAAATGCCTTTAGAGAAGCAGCAAGTCATGGCCTTACTGTTGCTAGAACTTGGGCCTTCAGTGATGGTGGCTATAGACCACTACAATATTCCCCTGGCTTCTATAATGAACAAATGTTCACGGTAAGACCTAGTTTGATTTTTATTTTTTTTTTACCTTTTAACATGTCATTTTCTTGTTGGACGTGTTATGTTTGTATTTTTTATTTTGAATGTTGTCTGTGTGTTGTTGGAATGAAGGGGTTAGATTTCGTTGTATCAGAGGCCAGAAAGTACGGGATTAAGCTCATACTGAGCTTGGTGAACAACTACGAAAATTTTGGAGGCAAGAAGCAGTATGTGAACTGGGCTAGAAGTCACGGCCAGTACCTTACTTCAGATGATGATTTCTTTAGGAGCCCTGTTGTTAAGGGTTACTACATGAACCATGTCAGGACTGTTCTCAACAGATACAACAGATTTACTGGTATGCATTACAAAGATGACCCAACAATCATGGCCTGGGAGCTTATGAATGAACCTAGATGCACATCGGATCCTTCAGGAAGGACTATTCAGGCGTGGATCACGGAAATGGCTTCGTTTTTGAAGTCCATAGACAGGAACCACTTATTGGAAGCTGGACTAGAAGGGTTTTACGGACAATCAACACCACAAAGAAAAACAATGAATCCCGGTTTCAACATAGGGACAGACTTCATCGCAAATAACCGAATCCCGGCCATTGATTTTGCAACAGTCCACTGCTACCCCGACCAATGGGTATCGAGCTCAAATATTCAGTACCAGCTTTCATTCTTGAACAACTGGTTGAGTGCCCACTTCATAGACGCGCAATACCATATAAAGAAACCAATACTGGTGGCAGAATTTGGGAAATCATTTAAGGGTTCGAGTTCCTACGAGAGGGATGAGGTGTTCAATTCAGTGTATTACAAAATATACGCTTCTGCAAAGAGAGGAGGTGCAGCGAGTGGAGCACTGTTCTGGCAGCTTCTAACGGAGGGCATGGAGTCTTTCCAAGACGGTTACGGAATCATTCTTGGGCAGAGTTCCTCTACGGCCAATCTCATTGCTCGCCAGTCCCGCAAGCTGTACCTGATTCGGAAGATCTTCGCAAGGGTCGCGAACATGCGGCGATGGCAAAGGGCCAGAGCCAGAGGATTTTCTGGCTCCGGAGGTGGAAACGGAGGCAGATACATTGACAACTGA >Glyma01g37720.2 sequence type=CDS gene model=Glyma01g37720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCATTTTGCCTTGGTGTTTCTTTTGGCCATTTTGGTCCCTCAGGAGTGTTTCCATGTCAGTGTGGAAGCAAGGGATGATTTTGTCAGAACTAGAGGCATCCACTTCATGCTGAATGGATACCCTTACTATGCAAATGGCTTCAATGCCTACTGGTTAATGTACACAGCTTCTGACCCATCTCAGAGATTCAAGGTTTCAAATGCCTTTAGAGAAGCAGCAAGTCATGGCCTTACTGTTGCTAGAACTTGGGCCTTCAGTGATGGTGGCTATAGACCACTACAATATTCCCCTGGCTTCTATAATGAACAAATGTTCACGGGGTTAGATTTCGTTGTATCAGAGGCCAGAAAGTACGGGATTAAGCTCATACTGAGCTTGGTGAACAACTACGAAAATTTTGGAGGCAAGAAGCAGTATGTGAACTGGGCTAGAAGTCACGGCCAGTACCTTACTTCAGATGATGATTTCTTTAGGAGCCCTGTTGTTAAGGGTTACTACATGAACCATGTCAGGACTGTTCTCAACAGATACAACAGATTTACTGGTATGCATTACAAAGATGACCCAACAATCATGGCCTGGGAGCTTATGAATGAACCTAGATGCACATCGGATCCTTCAGGAAGGACTATTCAGGCGTGGATCACGGAAATGGCTTCGTTTTTGAAGTCCATAGACAGGAACCACTTATTGGAAGCTGGACTAGAAGGGTTTTACGGACAATCAACACCACAAAGAAAAACAATGAATCCCGGTTTCAACATAGGGACAGACTTCATCGCAAATAACCGAATCCCGGCCATTGATTTTGCAACAGTCCACTGCTACCCCGACCAATGGGTATCGAGCTCAAATATTCAGTACCAGCTTTCATTCTTGAACAACTGGTTGAGTGCCCACTTCATAGACGCGCAATACCATATAAAGAAACCAATACTGGTGGCAGAATTTGGGAAATCATTTAAGGGTTCGAGTTCCTACGAGAGGGATGAGGTGTTCAATTCAGTGTATTACAAAATATACGCTTCTGCAAAGAGAGGAGGTGCAGCGAGTGGAGCACTGTTCTGGCAGCTTCTAACGGAGGGCATGGAGTCTTTCCAAGACGGTTACGGAATCATTCTTGGGCAGAGTTCCTCTACGGCCAATCTCATTGCTCGCCAGTCCCGCAAGCTGTACCTGATTCGGAAGATCTTCGCAAGGGTCGCGAACATGCGGCGATGGCAAAGGGCCAGAGCCAGAGGATTTTCTGGCTCCGGAGGTGGAAACGGAGGCAGATACATTGACAACTGA
>Glyma01g37720.1 sequence type=predicted peptide gene model=Glyma01g37720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKHFALVFLLAILVPQECFHVSVEARDDFVRTRGIHFMLNGYPYYANGFNAYWLMYTASDPSQRFKVSNAFREAASHGLTVARTWAFSDGGYRPLQYSPGFYNEQMFTVRPSLIFIFFLPFNMSFSCWTCYVCIFYFECCLCVVGMKGLDFVVSEARKYGIKLILSLVNNYENFGGKKQYVNWARSHGQYLTSDDDFFRSPVVKGYYMNHVRTVLNRYNRFTGMHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASFLKSIDRNHLLEAGLEGFYGQSTPQRKTMNPGFNIGTDFIANNRIPAIDFATVHCYPDQWVSSSNIQYQLSFLNNWLSAHFIDAQYHIKKPILVAEFGKSFKGSSSYERDEVFNSVYYKIYASAKRGGAASGALFWQLLTEGMESFQDGYGIILGQSSSTANLIARQSRKLYLIRKIFARVANMRRWQRARARGFSGSGGGNGGRYIDN* >Glyma01g37720.2 sequence type=predicted peptide gene model=Glyma01g37720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKHFALVFLLAILVPQECFHVSVEARDDFVRTRGIHFMLNGYPYYANGFNAYWLMYTASDPSQRFKVSNAFREAASHGLTVARTWAFSDGGYRPLQYSPGFYNEQMFTGLDFVVSEARKYGIKLILSLVNNYENFGGKKQYVNWARSHGQYLTSDDDFFRSPVVKGYYMNHVRTVLNRYNRFTGMHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASFLKSIDRNHLLEAGLEGFYGQSTPQRKTMNPGFNIGTDFIANNRIPAIDFATVHCYPDQWVSSSNIQYQLSFLNNWLSAHFIDAQYHIKKPILVAEFGKSFKGSSSYERDEVFNSVYYKIYASAKRGGAASGALFWQLLTEGMESFQDGYGIILGQSSSTANLIARQSRKLYLIRKIFARVANMRRWQRARARGFSGSGGGNGGRYIDN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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