Glyma01g37675 - SoyBase

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Report for Sequence Feature Glyma01g37675

Feature Type:	gene_model
Chromosome:	Gm01
Start:	49992410
stop:	49993063
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g37675

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05920	AT	Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein \| chr3:1768991-1769522 REVERSE LENGTH=126	SoyBase	E_val: 2.00E-11	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1603	KOG	Copper chaperone	JGI		ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_B9S6C0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9S6C0_RICCO	SoyBase	E_val: 7.00E-25	ISS
UniRef100_I1LHW0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHW0_SOYBN	SoyBase	E_val: 1.00E-40	ISS

Expression Patterns of Glyma01g37675

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g37675 not represented in the dataset	Glyma01g37675 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g37675

Paralog	Evidence	Comments
Glyma11g07610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g37675 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g171500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g37675

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g37675

Limit To All Plant Sequences

>Glyma01g37675.1   sequence type=CDS   gene model=Glyma01g37675   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAAGAAGACAGTGTTGAAGGTTGACATCAGTTGTCTCAAATGCAAAACGAAGCTCCTCAAAATTGTCTCTTCCCTTCAAGGGGTGGATAAAATTGAAGCTGATGAAGGAAAGGGTACGTTGACCGTGACAGGGGATGCAGACCCATATGAAATAATAGTTCGCATAAGGAAAGCTGGCAAACATGCTGAAGTTGTGAGTGTTGGGCCTCCCCGGGACCCTCCATTGCAACCTCCAATGAAAAATCTGAGGAGTCCACTCAGTCCAGTATCCACATGCCATATTACTATCCTCCTTACCAATCCATCTTGCACTATATTGTGA

Predicted protein sequences of Glyma01g37675

Limit To All Plant Sequences

>Glyma01g37675.1   sequence type=predicted peptide   gene model=Glyma01g37675   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKKTVLKVDISCLKCKTKLLKIVSSLQGVDKIEADEGKGTLTVTGDADPYEIIVRIRKAGKHAEVVSVGPPRDPPLQPPMKNLRSPLSPVSTCHITILLTNPSCTIL*

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