Glyma01g37560 - SoyBase

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Report for Sequence Feature Glyma01g37560

Feature Type:	gene_model
Chromosome:	Gm01
Start:	49891281
stop:	49893312
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g37560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51040	AT	Annotation by Michelle Graham. TAIR10: RTE1-homolog \| chr3:18952281-18953060 REVERSE LENGTH=231	SoyBase	E_val: 8.00E-96	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3150	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR20921	Panther	UNCHARACTERIZED	JGI		ISS
PF05608	PFAM	Protein of unknown function (DUF778)	JGI		ISS
UniRef100_B7FKX1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=B7FKX1_MEDTR	SoyBase	E_val: 2.00E-139	ISS
UniRef100_C6THN6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6THN6_SOYBN	SoyBase	E_val: 3.00E-170	ISS

Expression Patterns of Glyma01g37560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g37560 not represented in the dataset	Glyma01g37560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g37560

Paralog	Evidence	Comments
Glyma11g07740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g37560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g170400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g37560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g37560

Limit To All Plant Sequences

>Glyma01g37560.5   sequence type=transcript   gene model=Glyma01g37560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTAAACCACTTTTACTTTATCAATTTGCCTGATGTAATTACTCACACAATTTTTGTTCATATCTATATAAAAAAAAAGCAAATAAAATTAAAATTTAAGACGACATGATAGAAAAAAGTTTGAATAATAGTATTTGTTTCACACTTTAGGAAACACAGAGAGAGAGACAACAAATAAGATGAAAAACGTAGGAAAATTAGAGTTTAGTGGAGAATTATAGAAATTACGGTCCCTTCTTCTAATTGTGTGCGAGTAGCTGTTCTTCTGCTTCTGCTTTACAAGTTTTGTTGCCATGGAAGCAGAGTTGGATACCGAGCAGCAGCAGCAAATGACGGAAGGAAGCTATTCCCAAACTATGCAAATTGATCCAAAAAGGGCTCGATTTCCATGCTCCGTTGTGTGGTCACCACTTCCTGTAATCTCGTGGTTCATTCCTTGCATTGGTCACATTGGCATCTGCAGAGAGGATGGGGTGATATTGGATTTTGCAGGGCCTAATTTTGTGTGTGTGGACAGTTTTGCATTTGGAGCTGCCACTCGCTATCTTCAAATCCCCAAAGAAAAGTGTTGTGTCCCCTTAGTCCAGTCTGTGTACAATGGTGAGGAACACTACATGCAGGGTGAAACTAGAGGAGATTTGAGGACTTGGGATGATGCACTAAGGAAAAGCACTCAAGAATTCCAACATCTATCTTACAATCTCTTTACCTGCAACTGCCACTCGTTTGTTGCCAATAATTTGAACAAGTTGGGTTTTCTGACTGGTGGATGGAATGTGGTGAATCTGGCAATTTTCATTTTATTCAATGGACGTTGGGTCAGCAAAGCATCTATGCTTCGATCTATCTTACCATTTGTGGTTGTATTTTTTCTTGGAGTCACATTCTGGGGCTTCACCTTCCTAAAGTTTTGGTTCTTCTTCACTTCCATTCTTATTGGGTGGTTCCTTCTTGGTACTTATTGTTTCAAGAACCTGATTCAGTTGTAGTATCTGTTTCTCTTGTTCTACTTTGTATAAAACTGTAATACGTTCGAAGTGATGGAAGTGACCCAATTAACCATATACTTTGTATTCAGATAAATTTTGTTGCTAAATGTTAAAGGCTTGTTCTTGTGGTATCAATTTGTTAGATGATATCTTGCCTGATATATATATATATATAGGGAGAATGACTTTCTTATTAATTATTAAAATGGCTAAGATTTAA

>Glyma01g37560.6   sequence type=transcript   gene model=Glyma01g37560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACTCACACAATTTTTGTTCATATCTATATAAAAAAAAAGCAAATAAAATTAAAATTTAAGACGACATGATAGAAAAAAGTTTGAATAATAGTATTTGTTTCACACTTTAGGAAACACAGAGAGAGAGACAACAAATAAGATGAAAAACGTAGGAAAATTAGAGTTTAGTGGAGAATTATAGAAATTACGGTCCCTTCTTCTAATTGTGTGCGAGTAGCTGTTCTTCTGCTTCTGCTTTACAAGGGTTTCTCGTCCTGCTTTGTAATTTTATCGTCAATCGCCCGTATTGTTTATAAGTCAGTTTAGGTATCACTCTCCCATCAATTTATTCCGCGAAACAAACTTCAATCTCGAATTTTGAAATCTGAATCTGTTTTTGTTGCCATGGAAGCAGAGTTGGATACCGAGCAGCAGCAGCAAATGACGGAAGGAAGCTATTCCCAAACTATGCAAATTGATCCAAAAAGGGCTCGATTTCCATGCTCCGTTGTGTGGTCACCACTTCCTGTAATCTCGTGGTTCATTCCTTGCATTGGTCACATTGGCATCTGCAGAGAGGATGGGGTGATATTGGATTTTGCAGGGCCTAATTTTGTGTGTGTGGACAGTTTTGCATTTGGAGCTGCCACTCGCTATCTTCAAATCCCCAAAGAAAAGTGTTGTGTCCCCTTAGTCCAGTCTGTGTACAATGGTGAGGAACACTACATGCAGGGTGAAACTAGAGGAGATTTGAGGACTTGGGATGATGCACTAAGGAAAAGCACTCAAGAATTCCAACATCTATCTTACAATCTCTTTACCTGCAACTGCCACTCGTTTGTTGCCAATAATTTGAACAAGTTGGGTTTTCTGACTGGTGGATGGAATGTGGTGAATCTGGCAATTTTCATTTTATTCAATGGACGTTGGGTCAGCAAAGCATCTATGCTTCGATCTATCTTACCATTTGTGGTTGTATTTTTTCTTGGAGTCACATTCTGGGGCTTCACCTTCCTAAAGTTTTGGTTCTTCTTCACTTCCATTCTTATTGGGTGGTTCCTTCTTGGTACTTATTGTTTCAAGAACCTGATTCAGTTGTAGTATCTGTTTCTCTTGTTCTACTTTGTATAAAACTGTAATACGTTCGAAGTGATGGAAGTGACCCAATTAACCATATACTTTGTATTCAGATAAATTTTGTTGCTAAATGTTAAAGGCTTGTTCTTGTGGTATCAATTTGTTAGATGATATCTTGCCTGATATATATATATATATAGGGAGAATGACTTTCTTATTAATTATTAAAATGGCTAAGATTTAA

>Glyma01g37560.7   sequence type=transcript   gene model=Glyma01g37560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACTCACACAATTTTTGTTCATATCTATATAAAAAAAAAGCAAATAAAATTAAAATTTAAGACGACATGATAGAAAAAAGTTTGAATAATAGTATTTGTTTCACACTTTAGGAAACACAGAGAGAGAGACAACAAATAAGATGAAAAACGTAGGAAAATTAGAGTTTAGTGGAGAATTATAGAAATTACGGTCCCTTCTTCTAATTGTGTGCGAGTAGCTGTTCTTCTGCTTCTGCTTTACAAGTCAGTTTTGTTGCCATGGAAGCAGAGTTGGATACCGAGCAGCAGCAGCAAATGACGGAAGGAAGCTATTCCCAAACTATGCAAATTGATCCAAAAAGGGCTCGATTTCCATGCTCCGTTGTGTGGTCACCACTTCCTGTAATCTCGTGGTTCATTCCTTGCATTGGTCACATTGGCATCTGCAGAGAGGATGGGGTGATATTGGATTTTGCAGGGCCTAATTTTGTGTGTGTGGACAGTTTTGCATTTGGAGCTGCCACTCGCTATCTTCAAATCCCCAAAGAAAAGTGTTGTGTCCCCTTAGTCCAGTCTGTGTACAATGGTGAGGAACACTACATGCAGGGTGAAACTAGAGGAGATTTGAGGACTTGGGATGATGCACTAAGGAAAAGCACTCAAGAATTCCAACATCTATCTTACAATCTCTTTACCTGCAACTGCCACTCGTTTGTTGCCAATAATTTGAACAAGTTGGGTTTTCTGACTGGTGGATGGAATGTGGTGAATCTGGCAATTTTCATTTTATTCAATGGACGTTGGGTCAGCAAAGCATCTATGCTTCGATCTATCTTACCATTTGTGGTTGTATTTTTTCTTGGAGTCACATTCTGGGGCTTCACCTTCCTAAAGTTTTGGTTCTTCTTCACTTCCATTCTTATTGGGTGGTTCCTTCTTGGTACTTATTGTTTCAAGAACCTGATTCAGTTGTAGTATCTGTTTCTCTTGTTCTACTTTGTATAAAACTGTAATACGTTCGAAGTGATGGAAGTGACCCAATTAACCATATACTTTGTATTCAGATAAATTTTGTTGCTAAATGTTAAAGGCTTGTTCTTGTGGTATCAATTTGTTAGATGATATCTTGCCTGATATATATATATATATAGGGAGAATGACTTTCTTATTAATTATTAAAATGGCTAAGATTTAA

Coding sequences of Glyma01g37560

Limit To All Plant Sequences

>Glyma01g37560.2   sequence type=CDS   gene model=Glyma01g37560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGAAGGAAGCTATTCCCAAACTATGCAAATTGATCCAAAAAGGGCTCGATTTCCATGCTCCGTTGTGTGGTCACCACTTCCTGTAATCTCGTGGTTCATTCCTTGCATTGGTCACATTGGCATCTGCAGAGAGGATGGGGTGATATTGGATTTTGCAGGGCCTAATTTTGTGTGTGTGGACAGTTTTGCATTTGGAGCTGCCACTCGCTATCTTCAAATCCCCAAAGAAAAGTGTTGTGTCCCCTTAGTCCAGTCTGTGTACAATGGTGAGGAACACTACATGCAGGGTGAAACTAGAGGAGATTTGAGGACTTGGGATGATGCACTAAGGAAAAGCACTCAAGAATTCCAACATCTATCTTACAATCTCTTTACCTGCAACTGCCACTCGTTTGTTGCCAATAATTTGAACAAGTTGGGTTTTCTGACTGGTGGATGGAATGTGGTGAATCTGGCAATTTTCATTTTATTCAATGGACGTTGGGTCAGCAAAGCATCTATGCTTCGATCTATCTTACCATTTGTGGTTGTATTTTTTCTTGGAGTCACATTCTGGGGCTTCACCTTCCTAAAGTTTTGGTTCTTCTTCACTTCCATTCTTATTGGGTGGTTCCTTCTTGGTACTTATTGTTTCAAGAACCTGATTCAGTTGTAG

>Glyma01g37560.5   sequence type=CDS   gene model=Glyma01g37560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGAGTTGGATACCGAGCAGCAGCAGCAAATGACGGAAGGAAGCTATTCCCAAACTATGCAAATTGATCCAAAAAGGGCTCGATTTCCATGCTCCGTTGTGTGGTCACCACTTCCTGTAATCTCGTGGTTCATTCCTTGCATTGGTCACATTGGCATCTGCAGAGAGGATGGGGTGATATTGGATTTTGCAGGGCCTAATTTTGTGTGTGTGGACAGTTTTGCATTTGGAGCTGCCACTCGCTATCTTCAAATCCCCAAAGAAAAGTGTTGTGTCCCCTTAGTCCAGTCTGTGTACAATGGTGAGGAACACTACATGCAGGGTGAAACTAGAGGAGATTTGAGGACTTGGGATGATGCACTAAGGAAAAGCACTCAAGAATTCCAACATCTATCTTACAATCTCTTTACCTGCAACTGCCACTCGTTTGTTGCCAATAATTTGAACAAGTTGGGTTTTCTGACTGGTGGATGGAATGTGGTGAATCTGGCAATTTTCATTTTATTCAATGGACGTTGGGTCAGCAAAGCATCTATGCTTCGATCTATCTTACCATTTGTGGTTGTATTTTTTCTTGGAGTCACATTCTGGGGCTTCACCTTCCTAAAGTTTTGGTTCTTCTTCACTTCCATTCTTATTGGGTGGTTCCTTCTTGGTACTTATTGTTTCAAGAACCTGATTCAGTTGTAG

>Glyma01g37560.6   sequence type=CDS   gene model=Glyma01g37560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGAGTTGGATACCGAGCAGCAGCAGCAAATGACGGAAGGAAGCTATTCCCAAACTATGCAAATTGATCCAAAAAGGGCTCGATTTCCATGCTCCGTTGTGTGGTCACCACTTCCTGTAATCTCGTGGTTCATTCCTTGCATTGGTCACATTGGCATCTGCAGAGAGGATGGGGTGATATTGGATTTTGCAGGGCCTAATTTTGTGTGTGTGGACAGTTTTGCATTTGGAGCTGCCACTCGCTATCTTCAAATCCCCAAAGAAAAGTGTTGTGTCCCCTTAGTCCAGTCTGTGTACAATGGTGAGGAACACTACATGCAGGGTGAAACTAGAGGAGATTTGAGGACTTGGGATGATGCACTAAGGAAAAGCACTCAAGAATTCCAACATCTATCTTACAATCTCTTTACCTGCAACTGCCACTCGTTTGTTGCCAATAATTTGAACAAGTTGGGTTTTCTGACTGGTGGATGGAATGTGGTGAATCTGGCAATTTTCATTTTATTCAATGGACGTTGGGTCAGCAAAGCATCTATGCTTCGATCTATCTTACCATTTGTGGTTGTATTTTTTCTTGGAGTCACATTCTGGGGCTTCACCTTCCTAAAGTTTTGGTTCTTCTTCACTTCCATTCTTATTGGGTGGTTCCTTCTTGGTACTTATTGTTTCAAGAACCTGATTCAGTTGTAG

>Glyma01g37560.7   sequence type=CDS   gene model=Glyma01g37560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGAGTTGGATACCGAGCAGCAGCAGCAAATGACGGAAGGAAGCTATTCCCAAACTATGCAAATTGATCCAAAAAGGGCTCGATTTCCATGCTCCGTTGTGTGGTCACCACTTCCTGTAATCTCGTGGTTCATTCCTTGCATTGGTCACATTGGCATCTGCAGAGAGGATGGGGTGATATTGGATTTTGCAGGGCCTAATTTTGTGTGTGTGGACAGTTTTGCATTTGGAGCTGCCACTCGCTATCTTCAAATCCCCAAAGAAAAGTGTTGTGTCCCCTTAGTCCAGTCTGTGTACAATGGTGAGGAACACTACATGCAGGGTGAAACTAGAGGAGATTTGAGGACTTGGGATGATGCACTAAGGAAAAGCACTCAAGAATTCCAACATCTATCTTACAATCTCTTTACCTGCAACTGCCACTCGTTTGTTGCCAATAATTTGAACAAGTTGGGTTTTCTGACTGGTGGATGGAATGTGGTGAATCTGGCAATTTTCATTTTATTCAATGGACGTTGGGTCAGCAAAGCATCTATGCTTCGATCTATCTTACCATTTGTGGTTGTATTTTTTCTTGGAGTCACATTCTGGGGCTTCACCTTCCTAAAGTTTTGGTTCTTCTTCACTTCCATTCTTATTGGGTGGTTCCTTCTTGGTACTTATTGTTTCAAGAACCTGATTCAGTTGTAG

Predicted protein sequences of Glyma01g37560

Limit To All Plant Sequences

>Glyma01g37560.2   sequence type=predicted peptide   gene model=Glyma01g37560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEGSYSQTMQIDPKRARFPCSVVWSPLPVISWFIPCIGHIGICREDGVILDFAGPNFVCVDSFAFGAATRYLQIPKEKCCVPLVQSVYNGEEHYMQGETRGDLRTWDDALRKSTQEFQHLSYNLFTCNCHSFVANNLNKLGFLTGGWNVVNLAIFILFNGRWVSKASMLRSILPFVVVFFLGVTFWGFTFLKFWFFFTSILIGWFLLGTYCFKNLIQL*

>Glyma01g37560.5   sequence type=predicted peptide   gene model=Glyma01g37560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAELDTEQQQQMTEGSYSQTMQIDPKRARFPCSVVWSPLPVISWFIPCIGHIGICREDGVILDFAGPNFVCVDSFAFGAATRYLQIPKEKCCVPLVQSVYNGEEHYMQGETRGDLRTWDDALRKSTQEFQHLSYNLFTCNCHSFVANNLNKLGFLTGGWNVVNLAIFILFNGRWVSKASMLRSILPFVVVFFLGVTFWGFTFLKFWFFFTSILIGWFLLGTYCFKNLIQL*

>Glyma01g37560.6   sequence type=predicted peptide   gene model=Glyma01g37560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAELDTEQQQQMTEGSYSQTMQIDPKRARFPCSVVWSPLPVISWFIPCIGHIGICREDGVILDFAGPNFVCVDSFAFGAATRYLQIPKEKCCVPLVQSVYNGEEHYMQGETRGDLRTWDDALRKSTQEFQHLSYNLFTCNCHSFVANNLNKLGFLTGGWNVVNLAIFILFNGRWVSKASMLRSILPFVVVFFLGVTFWGFTFLKFWFFFTSILIGWFLLGTYCFKNLIQL*

>Glyma01g37560.7   sequence type=predicted peptide   gene model=Glyma01g37560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAELDTEQQQQMTEGSYSQTMQIDPKRARFPCSVVWSPLPVISWFIPCIGHIGICREDGVILDFAGPNFVCVDSFAFGAATRYLQIPKEKCCVPLVQSVYNGEEHYMQGETRGDLRTWDDALRKSTQEFQHLSYNLFTCNCHSFVANNLNKLGFLTGGWNVVNLAIFILFNGRWVSKASMLRSILPFVVVFFLGVTFWGFTFLKFWFFFTSILIGWFLLGTYCFKNLIQL*

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