SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36390 | AT | Annotation by Michelle Graham. TAIR10: Methylthiotransferase | chr4:17194746-17197054 REVERSE LENGTH=640 | SoyBase | E_val: 0 | ISS |
| GO:0006400 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA modification | SoyBase | N/A | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0009451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA modification | SoyBase | N/A | ISS |
| GO:0009691 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0043412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: macromolecule modification | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0051536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding | SoyBase | N/A | ISS |
| GO:0051539 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding | SoyBase | N/A | ISS |
| KOG2492 | KOG | CDK5 activator-binding protein | JGI | ISS | |
| PTHR11918 | Panther | RADICAL SAM PROTEINS | JGI | ISS | |
| PTHR11918:SF41 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF00919 | PFAM | Uncharacterized protein family UPF0004 | JGI | ISS | |
| PF01938 | PFAM | TRAM domain | JGI | ISS | |
| PF04055 | PFAM | Radical SAM superfamily | JGI | ISS | |
| UniRef100_B9S686 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Radical sam protein, putative n=1 Tax=Ricinus communis RepID=B9S686_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023374CB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023374CB related cluster n=1 Tax=unknown RepID=UPI00023374CB | SoyBase | E_val: 0 | ISS |
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Glyma01g37500 not represented in the dataset |
Glyma01g37500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g07790 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g169900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g37500.2 sequence type=CDS gene model=Glyma01g37500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCTCACTGTCTTCCGTTGTCAACCAACCTCACTTAGCTCAGCGCCTCAAGCTTCACCGTCCATCTTCTCTTACCACTCTCACAATTTTCTTCCACAAACACAAACACCAACACCAACACAATGCTTCATTTCCACACCCATATACGTCATCGCCTCGCTCACGCCCTCTCAATCTCATCATGGCATCCAGAACCCACTCTCCTTCCTACACTCTCCGCCGTCACTTCATCCCTCAAGCTACACTCACTGCTTCCGAAGCTCAACCCCGCCTTGTACCAGATACTGAAGTTCCTCCCACTGGTCGAATATATCATGAGACTTATGGATGTCAAATGAATGTTAATGATATGGAGATTGTTCTGTCTATAATGAAAAATGCTGGTTATGGTGAAATTGTGAGTGTTCCCGAGAGTGCAGAAATAATATTCATCAATACCTGTGCCATTAGAGACAATGCAGAGCAGAAGGTATGGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGCATTGGAAGAGCAACGTTGCTACTGGAAGGTCGCAATCCATGCGCCCTCCAAAAGTGGTGGTTTTGGGATGTATGGCTGAGAGGTTAAAGGAGAAGATACTTGATTCAGACAAAATGGTTGATGTGGTTTGTGGGCCTGATGCTTACAGGGATTTGCCGCGATTACTGGAGGAGGTTGATTATGGTCAGAGAGGGATCAATACTCTCCTTTCACTCGAGGAGACTTATGCTGATATTAATCCAGTTCGAATCTCCAAGAACTCAGTTACTGCATTTGTCTCAGTGATGAGGGGTTGCAACAATATGTGTTCGTTTTGTATTGTACCTTTTACTAGAGGCAGAGAGCGATCACGCCCTGTGGAGTCAATTGTGAGAGAGGTAGCAGAGCTTTGGAAAGAGGGTGTTAAGGAAGTAATGCTTCTTGGCCAGAATGTGAACAGCTACAATGATGCATCTGGAATTGAGAGAGAGGTTGAATCAGGGTCCAATTGGAAACTTAGTGAAGGATTTTCCAGCATGGCTAAGGTCAAGAATATGGGTTTAAGGTTCTCTGATCTACTGGATCGATTGTCCTCAGAATTTCCTGAGATGCGATTCAGATTCACGTCTCCACACCCTAAAGATTTTCCTGATGATTTGCTTTATCTAATGCGAGAAAGACATAATATATGCAAATTGATACATTTACCTGCTCAAACTGGAAGTAGCACAGTGCTTGAGAGAATGAGAAGAGGATATACACGAGAGGCTTACTTGGATCTTGTGCAAAAAATTCGGAGTATTATTCCAGATGTGGCTTTGAGCAGTGATTTCATTTGTGGATTTTGTGGAGAAACAGAGGAGGAGCATTCTGAGACGTTGACTCTAATAAAAGCTGTTGGTTATGATATGGCATTCTTGTTTGCTTATAGCATGAGGGAGAAAACTCATGCCCACAGAAATTATGTTGATGATGTTCCGGAGGAAATAAAGCAGAGAAGGCTAGCTGAACTTATTGAGACTTTCCGTGAGAGCACAGGACAGTGTTTTGACTCTCAGATTGGAACTACACAGCTTGTATTAGTCGAAGGACCCAATAAAAGAGCTCCAGATACTGAGCTTATGGGCAAGAGCGACAAGGGCCATCGAGTGTTGTTTGTCAATATGCCAATCCCAGACAGGGAAGACATTAATACAAAGCGAAATCCTGTGGTTGGTGATTATGTTGAAGTCCACATAACAAGATCTACGAGGGCGTCACTCTTTGGTGAAGCACTTGCTATAACTAAACTGACTTCGTTTGACAATAATCTGGATAAAGAAGCTGCTGCATGCAGCATGTAA
>Glyma01g37500.2 sequence type=predicted peptide gene model=Glyma01g37500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSLSSVVNQPHLAQRLKLHRPSSLTTLTIFFHKHKHQHQHNASFPHPYTSSPRSRPLNLIMASRTHSPSYTLRRHFIPQATLTASEAQPRLVPDTEVPPTGRIYHETYGCQMNVNDMEIVLSIMKNAGYGEIVSVPESAEIIFINTCAIRDNAEQKVWQRLNYFWFLKRHWKSNVATGRSQSMRPPKVVVLGCMAERLKEKILDSDKMVDVVCGPDAYRDLPRLLEEVDYGQRGINTLLSLEETYADINPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLLGQNVNSYNDASGIEREVESGSNWKLSEGFSSMAKVKNMGLRFSDLLDRLSSEFPEMRFRFTSPHPKDFPDDLLYLMRERHNICKLIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRSIIPDVALSSDFICGFCGETEEEHSETLTLIKAVGYDMAFLFAYSMREKTHAHRNYVDDVPEEIKQRRLAELIETFRESTGQCFDSQIGTTQLVLVEGPNKRAPDTELMGKSDKGHRVLFVNMPIPDREDINTKRNPVVGDYVEVHITRSTRASLFGEALAITKLTSFDNNLDKEAAACSM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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