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Report for Sequence Feature Glyma01g37490

Feature Type:gene_model
Chromosome:Gm01
Start:49841545
stop:49848877
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36400AT Annotation by Michelle Graham. TAIR10: FAD-linked oxidases family protein | chr4:17197265-17200472 FORWARD LENGTH=559 SoyBaseE_val: 0ISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008762GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016614GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
GO:0051990GO-mf Annotation by Michelle Graham. GO Molecular Function: (R)-2-hydroxyglutarate dehydrogenase activity SoyBaseN/AISS
KOG1232 KOG Proteins containing the FAD binding domain JGI ISS
PTHR11748Panther D-LACTATE DEHYDROGENASE JGI ISS
PTHR11748:SF17Panther D-LACTATE DEHYDROGENASE JGI ISS
PF01565PFAM FAD binding domain JGI ISS
PF02913PFAM FAD linked oxidases, C-terminal domain JGI ISS
UniRef100_B9S687UniRef Annotation by Michelle Graham. Most informative UniRef hit: D-lactate dehydrognease 2, putative n=1 Tax=Ricinus communis RepID=B9S687_RICCO SoyBaseE_val: 0ISS
UniRef100_I1J8P6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J8P6_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g37490 not represented in the dataset

Glyma01g37490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g07801 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g169800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g37490.3   sequence type=transcript   gene model=Glyma01g37490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTCAGATGGTACCTGGCACGTGTAGTGTGTCAGAACTCAGAACAAGTGAACCTCCTAGTTTAACACCATCTAAAATACACACACAACCTCCACTTTCCATCATCTTCAATCCAATTCCAAAGTACCGTAACGTAACAAACTTGACTTTGTGTGCCTCAGCTGCTATTGTTCATCGCAAGCTACCTAACAAGTTCGAGGCTGAACCTGAGACAATGGCGAATCACAATAGCAGATTCCTCTTACGCTCCTTCATCCCCTTCTTCCATCGCCGAATGAACTCACCTCTTCTTCCTTCAGCAACGTCATGTCCTCGGTTAACTTCGGGGACAGCTTTTGATGAAAAATTCACGCAGTTACCGAGCAATATTGTTCGCGGGGATCATCGTCAAGTTTTGTCTTTTTTCAATCCTTCAAGAAATTTCGCGGAAACCAAACAATGGGGTGTTGGAATTCGGCACAAATGCTTTGGTTCTATGGCTGGGTCGGTTCAAAGGAACCCCAGATTCTCAAAGTTGAATGATGATGATGTTCGATACTTAGAGGGTATATTGGGTTCCAAAAATGTTGTTCAAGATGAGGACAAGCTTGTCACTTCAAACACTGATTGGATGCATAAATACAAAGGCTCTAGTAAGCTCCTGTTACAACCTAGGACCGCTGATCAGGTTTCTCAGATTCTTAAATATTGTAACTCCAGAAACTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGAGGAAGTGTGCCTGTCTTTGATGAAGTGATTGTTAGTCTTAGTTCTATGAATAAGATCATATCTTTCGACAAGGTTAGTGGAATATTGGTATGTGAAGCTGGGTGCATATTGGAAAATATAATGTCATTCCTGGACAATGAAGGATTTATTATGCCACTAGACTTAGGTGCAAAAGGGAGTTGTCAGATTGGTGGAAATGTTTCAACTAATGCTGGTGGTTTGCGTCTTGTTCGCTATGGATCGCTTCATGGAAGTGTACTTGGTGTTGAAGCTGTTCTGGCAAATGGTACTGTACTTGACATGCTTAAGACATTGCGCAAAGATAATACTGGCTATGATTTGAAACATCTATTTATAGGAAGTGAAGGTTCCTTGGGAATTGTTACTAAGGTTTCAATACTTACCCCACCAAAGTTATCTTCAGTGAATGTGGCTTTTCTTGCTTGTAAAGACTATAGCAGCTGCCAGAAATTGCTACAGGAGGCAAAAGGGAAACTTGGGGAGATTTTATCTGCATTTGAATTTCTGGATGTCCAGTCTATGAATTTGGTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCCGTCATTGCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAGCAAAAGCTTGAAGCATTTCTACTTGGCTCCATGGAGAATGAATTGATATCCGATGGTGTTCTTGCACAAGACATAAACCAAGCATCATCTTTTTGGCTTCTACGTGAGGGTATACCAGAGGCATTGATGAGAGCAGGAGCTGTTTACAAGTATGATTTATCAATACCTCTTGAACACATGTACAATCTTGTTGAAGAAATGCGCTCTAGACTAGGTAACACAGCTAATGTAATAGGATATGGTCACCTTGGAGATGGTAATTTGCATTTAAACATTTCTACTTCTCATTACGATGACAAGGTAGCTCAAGCAAACTCAAAAAAAACTGTTTGGATATGAAATTATGCTTTTTATAACATCATCAGCGTTAAAATTTGCAGATTTTGTCACATATTGAACCTTATGTATATGAATGGACATCTAAGCACCGAGGTAGCATTAGCGCGGAGCATGGCCTGGGACTAATGAAAGCCAACGAAATTTTCTACAGCAAATCACATGAAACTGTACAAGTGATGGCTTCAATCAAGAATTTGCTGGACCCCAATCACATACTCAACCCATATAAAGTTCTTCCTCAGTCTCTCATTTCATAATCTCTTGTCGAAAACTTGATGTTGTATTCATATCTTTGTCACTTCCTTGAAGTGAGACAAACTTCTTTACTTGATCCAGTAAGTACACAGGAATTCTCTCCACATGACAGTGCCCTCACTCATCTAAAAAGTGTATTGCTACATTATGAATAATAAATATAGATATTTGACTAAAGTGTAATAAATTGGTAACAATCTTTTATTATCTCACCCCCCTCCAACTATTTGATTGGTGATATCAAGTAGATATGCATATGCCTTTTACTTGATATTCCCAATAAGGGTAAGTAGG

>Glyma01g37490.2   sequence type=CDS   gene model=Glyma01g37490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTACCTGGCACGTGTAGTGTGTCAGAACTCAGAACAAGTGAACCTCCTAGTTTAACACCATCTAAAATACACACACAACCTCCACTTTCCATCATCTTCAATCCAATTCCAAAGTACCGTAACGTAACAAACTTGACTTTGTGTGCCTCAGCTGCTATTGTTCATCGCAAGCTACCTAACAAGTTCGAGGCTGAACCTGAGACAATGGCGAATCACAATAGCAGATTCCTCTTACGCTCCTTCATCCCCTTCTTCCATCGCCGAATGAACTCACCTCTTCTTCCTTCAGCAACGTCATGTCCTCGGTTAACTTCGGGGACAGCTTTTGATGAAAAATTCACGCAGTTACCGAGCAATATTGTTCGCGGGGATCATCGTCAAGTTTTGTCTTTTTTCAATCCTTCAAGAAATTTCGCGGAAACCAAACAATGGGGTGTTGGAATTCGGCACAAATGCTTTGGTTCTATGGCTGGGTCGGTTCAAAGGAACCCCAGATTCTCAAAGTTGAATGATGATGATGTTCGATACTTAGAGGGTATATTGGGTTCCAAAAATGTTGTTCAAGATGAGGACAAGCTTGTCACTTCAAACACTGATTGGATGCATAAATACAAAGGCTCTAGTAAGCTCCTGTTACAACCTAGGACCGCTGATCAGGTTTCTCAGATTCTTAAATATTGTAACTCCAGAAACTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGAGGAAGTGTGCCTGTCTTTGATGAAGTGATTGTTAGTCTTAGTTCTATGAATAAGATCATATCTTTCGACAAGGTTAGTGGAATATTGGTATGTGAAGCTGGGTGCATATTGGAAAATATAATGTCATTCCTGGACAATGAAGGATTTATTATGCCACTAGACTTAGGTGCAAAAGGGAGTTGTCAGATTGGTGGAAATGTTTCAACTAATGCTGGTGGTTTGCGTCTTGTTCGCTATGGATCGCTTCATGGAAGTGTACTTGGTGTTGAAGCTGTTCTGGCAAATGGTACTGTACTTGACATGCTTAAGACATTGCGCAAAGATAATACTGGCTATGATTTGAAACATCTATTTATAGGAAGTGAAGGTTCCTTGGGAATTGTTACTAAGGTTTCAATACTTACCCCACCAAAGTTATCTTCAGTGAATGTGGCTTTTCTTGCTTGTAAAGACTATAGCAGCTGCCAGAAATTGCTACAGGAGGCAAAAGGGAAACTTGGGGAGATTTTATCTGCATTTGAATTTCTGGATGTCCAGTCTATGAATTTGGTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCCGTCATTGCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAGCAAAAGCTTGAAGCATTTCTACTTGGCTCCATGGAGAATGAATTGATATCCGATGGTGTTCTTGCACAAGACATAAACCAAGCATCATCTTTTTGGCTTCTACGTGAGGGTATACCAGAGGCATTGATGAGAGCAGGAGCTGTTTACAAGTATGATTTATCAATACCTCTTGAACACATGTACAATCTTGTTGAAGAAATGCGCTCTAGACTAGGTAACACAGCTAATGTAATAGGATATGGTCACCTTGGAGATGGTAATTTGCATTTAAACATTTCTACTTCTCATTACGATGACAAGATTTTGTCACATATTGAACCTTATGTATATGAATGGACATCTAAGCACCGAGGTAGCATTAGCGCGGAGCATGGCCTGGGACTAATGAAAGCCAACGAAATTTTCTACAGCAAATCACATGAAACTGTACAAGTGATGGCTTCAATCAAGAATTTGCTGGACCCCAATCACATACTCAACCCATATAAAGTTCTTCCTCAGTCTCTCATTTCATAA

>Glyma01g37490.3   sequence type=CDS   gene model=Glyma01g37490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTACCTGGCACGTGTAGTGTGTCAGAACTCAGAACAAGTGAACCTCCTAGTTTAACACCATCTAAAATACACACACAACCTCCACTTTCCATCATCTTCAATCCAATTCCAAAGTACCGTAACGTAACAAACTTGACTTTGTGTGCCTCAGCTGCTATTGTTCATCGCAAGCTACCTAACAAGTTCGAGGCTGAACCTGAGACAATGGCGAATCACAATAGCAGATTCCTCTTACGCTCCTTCATCCCCTTCTTCCATCGCCGAATGAACTCACCTCTTCTTCCTTCAGCAACGTCATGTCCTCGGTTAACTTCGGGGACAGCTTTTGATGAAAAATTCACGCAGTTACCGAGCAATATTGTTCGCGGGGATCATCGTCAAGTTTTGTCTTTTTTCAATCCTTCAAGAAATTTCGCGGAAACCAAACAATGGGGTGTTGGAATTCGGCACAAATGCTTTGGTTCTATGGCTGGGTCGGTTCAAAGGAACCCCAGATTCTCAAAGTTGAATGATGATGATGTTCGATACTTAGAGGGTATATTGGGTTCCAAAAATGTTGTTCAAGATGAGGACAAGCTTGTCACTTCAAACACTGATTGGATGCATAAATACAAAGGCTCTAGTAAGCTCCTGTTACAACCTAGGACCGCTGATCAGGTTTCTCAGATTCTTAAATATTGTAACTCCAGAAACTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGAGGAAGTGTGCCTGTCTTTGATGAAGTGATTGTTAGTCTTAGTTCTATGAATAAGATCATATCTTTCGACAAGGTTAGTGGAATATTGGTATGTGAAGCTGGGTGCATATTGGAAAATATAATGTCATTCCTGGACAATGAAGGATTTATTATGCCACTAGACTTAGGTGCAAAAGGGAGTTGTCAGATTGGTGGAAATGTTTCAACTAATGCTGGTGGTTTGCGTCTTGTTCGCTATGGATCGCTTCATGGAAGTGTACTTGGTGTTGAAGCTGTTCTGGCAAATGGTACTGTACTTGACATGCTTAAGACATTGCGCAAAGATAATACTGGCTATGATTTGAAACATCTATTTATAGGAAGTGAAGGTTCCTTGGGAATTGTTACTAAGGTTTCAATACTTACCCCACCAAAGTTATCTTCAGTGAATGTGGCTTTTCTTGCTTGTAAAGACTATAGCAGCTGCCAGAAATTGCTACAGGAGGCAAAAGGGAAACTTGGGGAGATTTTATCTGCATTTGAATTTCTGGATGTCCAGTCTATGAATTTGGTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCCGTCATTGCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAGCAAAAGCTTGAAGCATTTCTACTTGGCTCCATGGAGAATGAATTGATATCCGATGGTGTTCTTGCACAAGACATAAACCAAGCATCATCTTTTTGGCTTCTACGTGAGGGTATACCAGAGGCATTGATGAGAGCAGGAGCTGTTTACAAGTATGATTTATCAATACCTCTTGAACACATGTACAATCTTGTTGAAGAAATGCGCTCTAGACTAGGTAACACAGCTAATGTAATAGGATATGGTCACCTTGGAGATGGTAATTTGCATTTAAACATTTCTACTTCTCATTACGATGACAAGGTAGCTCAAGCAAACTCAAAAAAAACTGTTTGGATATGA

>Glyma01g37490.2   sequence type=predicted peptide   gene model=Glyma01g37490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPGTCSVSELRTSEPPSLTPSKIHTQPPLSIIFNPIPKYRNVTNLTLCASAAIVHRKLPNKFEAEPETMANHNSRFLLRSFIPFFHRRMNSPLLPSATSCPRLTSGTAFDEKFTQLPSNIVRGDHRQVLSFFNPSRNFAETKQWGVGIRHKCFGSMAGSVQRNPRFSKLNDDDVRYLEGILGSKNVVQDEDKLVTSNTDWMHKYKGSSKLLLQPRTADQVSQILKYCNSRNLAVVPQGGNTGLVGGSVPVFDEVIVSLSSMNKIISFDKVSGILVCEAGCILENIMSFLDNEGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGVEAVLANGTVLDMLKTLRKDNTGYDLKHLFIGSEGSLGIVTKVSILTPPKLSSVNVAFLACKDYSSCQKLLQEAKGKLGEILSAFEFLDVQSMNLVLNHMEGARNPLPSLHNFYVLIETTGSDESSDKQKLEAFLLGSMENELISDGVLAQDINQASSFWLLREGIPEALMRAGAVYKYDLSIPLEHMYNLVEEMRSRLGNTANVIGYGHLGDGNLHLNISTSHYDDKILSHIEPYVYEWTSKHRGSISAEHGLGLMKANEIFYSKSHETVQVMASIKNLLDPNHILNPYKVLPQSLIS*

>Glyma01g37490.3   sequence type=predicted peptide   gene model=Glyma01g37490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPGTCSVSELRTSEPPSLTPSKIHTQPPLSIIFNPIPKYRNVTNLTLCASAAIVHRKLPNKFEAEPETMANHNSRFLLRSFIPFFHRRMNSPLLPSATSCPRLTSGTAFDEKFTQLPSNIVRGDHRQVLSFFNPSRNFAETKQWGVGIRHKCFGSMAGSVQRNPRFSKLNDDDVRYLEGILGSKNVVQDEDKLVTSNTDWMHKYKGSSKLLLQPRTADQVSQILKYCNSRNLAVVPQGGNTGLVGGSVPVFDEVIVSLSSMNKIISFDKVSGILVCEAGCILENIMSFLDNEGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGVEAVLANGTVLDMLKTLRKDNTGYDLKHLFIGSEGSLGIVTKVSILTPPKLSSVNVAFLACKDYSSCQKLLQEAKGKLGEILSAFEFLDVQSMNLVLNHMEGARNPLPSLHNFYVLIETTGSDESSDKQKLEAFLLGSMENELISDGVLAQDINQASSFWLLREGIPEALMRAGAVYKYDLSIPLEHMYNLVEEMRSRLGNTANVIGYGHLGDGNLHLNISTSHYDDKVAQANSKKTVWI*







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