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Report for Sequence Feature Glyma01g37490
Feature Type: gene_model
Chromosome: Gm01
Start: 49841545
stop: 49848877
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g37490
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G36400 AT
Annotation by Michelle Graham. TAIR10: FAD-linked oxidases family protein | chr4:17197265-17200472 FORWARD LENGTH=559
SoyBase E_val: 0 ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0008762 GO-mf
Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity
SoyBase N/A ISS
GO:0009055 GO-mf
Annotation by Michelle Graham. GO Molecular Function: electron carrier activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0016614 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors
SoyBase N/A ISS
GO:0050660 GO-mf
Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding
SoyBase N/A ISS
GO:0051990 GO-mf
Annotation by Michelle Graham. GO Molecular Function: (R)-2-hydroxyglutarate dehydrogenase activity
SoyBase N/A ISS
KOG1232
KOG
Proteins containing the FAD binding domain
JGI ISS
PTHR11748 Panther
D-LACTATE DEHYDROGENASE
JGI ISS
PTHR11748:SF17 Panther
D-LACTATE DEHYDROGENASE
JGI ISS
PF01565 PFAM
FAD binding domain
JGI ISS
PF02913 PFAM
FAD linked oxidases, C-terminal domain
JGI ISS
UniRef100_B9S687 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: D-lactate dehydrognease 2, putative n=1 Tax=Ricinus communis RepID=B9S687_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1J8P6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J8P6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g37490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g37490
Paralog Evidence Comments
Glyma11g07801 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g37490 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g169800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g37490
Transcripts of Glyma01g37490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g37490.3 sequence type=transcript gene model=Glyma01g37490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCTTCAGATGGTACCTGGCACGTGTAGTGTGTCAGAACTCAGAACAAGTGAACCTCCTAGTTTAACACCATCTAAAATACACACACAACCTCCACTTTCCATCATCTTCAATCCAATTCCAAAGTACCGTAACGTAACAAACTTGACTTTGTGTGCCTCAGCTGCTATTGTTCATCGCAAGCTACCTAACAAGTTCGAGGCTGAACCTGAGACAATGGCGAATCACAATAGCAGATTCCTCTTACGCTCCTTCATCCCCTTCTTCCATCGCCGAATGAACTCACCTCTTCTTCCTTCAGCAACGTCATGTCCTCGGTTAACTTCGGGGACAGCTTTTGATGAAAAATTCACGCAGTTACCGAGCAATATTGTTCGCGGGGATCATCGTCAAGTTTTGTCTTTTTTCAATCCTTCAAGAAATTTCGCGGAAACCAAACAATGGGGTGTTGGAATTCGGCACAAATGCTTTGGTTCTATGGCTGGGTCGGTTCAAAGGAACCCCAGATTCTCAAAGTTGAATGATGATGATGTTCGATACTTAGAGGGTATATTGGGTTCCAAAAATGTTGTTCAAGATGAGGACAAGCTTGTCACTTCAAACACTGATTGGATGCATAAATACAAAGGCTCTAGTAAGCTCCTGTTACAACCTAGGACCGCTGATCAGGTTTCTCAGATTCTTAAATATTGTAACTCCAGAAACTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGAGGAAGTGTGCCTGTCTTTGATGAAGTGATTGTTAGTCTTAGTTCTATGAATAAGATCATATCTTTCGACAAGGTTAGTGGAATATTGGTATGTGAAGCTGGGTGCATATTGGAAAATATAATGTCATTCCTGGACAATGAAGGATTTATTATGCCACTAGACTTAGGTGCAAAAGGGAGTTGTCAGATTGGTGGAAATGTTTCAACTAATGCTGGTGGTTTGCGTCTTGTTCGCTATGGATCGCTTCATGGAAGTGTACTTGGTGTTGAAGCTGTTCTGGCAAATGGTACTGTACTTGACATGCTTAAGACATTGCGCAAAGATAATACTGGCTATGATTTGAAACATCTATTTATAGGAAGTGAAGGTTCCTTGGGAATTGTTACTAAGGTTTCAATACTTACCCCACCAAAGTTATCTTCAGTGAATGTGGCTTTTCTTGCTTGTAAAGACTATAGCAGCTGCCAGAAATTGCTACAGGAGGCAAAAGGGAAACTTGGGGAGATTTTATCTGCATTTGAATTTCTGGATGTCCAGTCTATGAATTTGGTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCCGTCATTGCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAGCAAAAGCTTGAAGCATTTCTACTTGGCTCCATGGAGAATGAATTGATATCCGATGGTGTTCTTGCACAAGACATAAACCAAGCATCATCTTTTTGGCTTCTACGTGAGGGTATACCAGAGGCATTGATGAGAGCAGGAGCTGTTTACAAGTATGATTTATCAATACCTCTTGAACACATGTACAATCTTGTTGAAGAAATGCGCTCTAGACTAGGTAACACAGCTAATGTAATAGGATATGGTCACCTTGGAGATGGTAATTTGCATTTAAACATTTCTACTTCTCATTACGATGACAAGGTAGCTCAAGCAAACTCAAAAAAAACTGTTTGGATATGAAATTATGCTTTTTATAACATCATCAGCGTTAAAATTTGCAGATTTTGTCACATATTGAACCTTATGTATATGAATGGACATCTAAGCACCGAGGTAGCATTAGCGCGGAGCATGGCCTGGGACTAATGAAAGCCAACGAAATTTTCTACAGCAAATCACATGAAACTGTACAAGTGATGGCTTCAATCAAGAATTTGCTGGACCCCAATCACATACTCAACCCATATAAAGTTCTTCCTCAGTCTCTCATTTCATAATCTCTTGTCGAAAACTTGATGTTGTATTCATATCTTTGTCACTTCCTTGAAGTGAGACAAACTTCTTTACTTGATCCAGTAAGTACACAGGAATTCTCTCCACATGACAGTGCCCTCACTCATCTAAAAAGTGTATTGCTACATTATGAATAATAAATATAGATATTTGACTAAAGTGTAATAAATTGGTAACAATCTTTTATTATCTCACCCCCCTCCAACTATTTGATTGGTGATATCAAGTAGATATGCATATGCCTTTTACTTGATATTCCCAATAAGGGTAAGTAGG
Coding sequences of Glyma01g37490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g37490.2 sequence type=CDS gene model=Glyma01g37490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTACCTGGCACGTGTAGTGTGTCAGAACTCAGAACAAGTGAACCTCCTAGTTTAACACCATCTAAAATACACACACAACCTCCACTTTCCATCATCTTCAATCCAATTCCAAAGTACCGTAACGTAACAAACTTGACTTTGTGTGCCTCAGCTGCTATTGTTCATCGCAAGCTACCTAACAAGTTCGAGGCTGAACCTGAGACAATGGCGAATCACAATAGCAGATTCCTCTTACGCTCCTTCATCCCCTTCTTCCATCGCCGAATGAACTCACCTCTTCTTCCTTCAGCAACGTCATGTCCTCGGTTAACTTCGGGGACAGCTTTTGATGAAAAATTCACGCAGTTACCGAGCAATATTGTTCGCGGGGATCATCGTCAAGTTTTGTCTTTTTTCAATCCTTCAAGAAATTTCGCGGAAACCAAACAATGGGGTGTTGGAATTCGGCACAAATGCTTTGGTTCTATGGCTGGGTCGGTTCAAAGGAACCCCAGATTCTCAAAGTTGAATGATGATGATGTTCGATACTTAGAGGGTATATTGGGTTCCAAAAATGTTGTTCAAGATGAGGACAAGCTTGTCACTTCAAACACTGATTGGATGCATAAATACAAAGGCTCTAGTAAGCTCCTGTTACAACCTAGGACCGCTGATCAGGTTTCTCAGATTCTTAAATATTGTAACTCCAGAAACTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGAGGAAGTGTGCCTGTCTTTGATGAAGTGATTGTTAGTCTTAGTTCTATGAATAAGATCATATCTTTCGACAAGGTTAGTGGAATATTGGTATGTGAAGCTGGGTGCATATTGGAAAATATAATGTCATTCCTGGACAATGAAGGATTTATTATGCCACTAGACTTAGGTGCAAAAGGGAGTTGTCAGATTGGTGGAAATGTTTCAACTAATGCTGGTGGTTTGCGTCTTGTTCGCTATGGATCGCTTCATGGAAGTGTACTTGGTGTTGAAGCTGTTCTGGCAAATGGTACTGTACTTGACATGCTTAAGACATTGCGCAAAGATAATACTGGCTATGATTTGAAACATCTATTTATAGGAAGTGAAGGTTCCTTGGGAATTGTTACTAAGGTTTCAATACTTACCCCACCAAAGTTATCTTCAGTGAATGTGGCTTTTCTTGCTTGTAAAGACTATAGCAGCTGCCAGAAATTGCTACAGGAGGCAAAAGGGAAACTTGGGGAGATTTTATCTGCATTTGAATTTCTGGATGTCCAGTCTATGAATTTGGTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCCGTCATTGCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAGCAAAAGCTTGAAGCATTTCTACTTGGCTCCATGGAGAATGAATTGATATCCGATGGTGTTCTTGCACAAGACATAAACCAAGCATCATCTTTTTGGCTTCTACGTGAGGGTATACCAGAGGCATTGATGAGAGCAGGAGCTGTTTACAAGTATGATTTATCAATACCTCTTGAACACATGTACAATCTTGTTGAAGAAATGCGCTCTAGACTAGGTAACACAGCTAATGTAATAGGATATGGTCACCTTGGAGATGGTAATTTGCATTTAAACATTTCTACTTCTCATTACGATGACAAGATTTTGTCACATATTGAACCTTATGTATATGAATGGACATCTAAGCACCGAGGTAGCATTAGCGCGGAGCATGGCCTGGGACTAATGAAAGCCAACGAAATTTTCTACAGCAAATCACATGAAACTGTACAAGTGATGGCTTCAATCAAGAATTTGCTGGACCCCAATCACATACTCAACCCATATAAAGTTCTTCCTCAGTCTCTCATTTCATAA
>Glyma01g37490.3 sequence type=CDS gene model=Glyma01g37490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTACCTGGCACGTGTAGTGTGTCAGAACTCAGAACAAGTGAACCTCCTAGTTTAACACCATCTAAAATACACACACAACCTCCACTTTCCATCATCTTCAATCCAATTCCAAAGTACCGTAACGTAACAAACTTGACTTTGTGTGCCTCAGCTGCTATTGTTCATCGCAAGCTACCTAACAAGTTCGAGGCTGAACCTGAGACAATGGCGAATCACAATAGCAGATTCCTCTTACGCTCCTTCATCCCCTTCTTCCATCGCCGAATGAACTCACCTCTTCTTCCTTCAGCAACGTCATGTCCTCGGTTAACTTCGGGGACAGCTTTTGATGAAAAATTCACGCAGTTACCGAGCAATATTGTTCGCGGGGATCATCGTCAAGTTTTGTCTTTTTTCAATCCTTCAAGAAATTTCGCGGAAACCAAACAATGGGGTGTTGGAATTCGGCACAAATGCTTTGGTTCTATGGCTGGGTCGGTTCAAAGGAACCCCAGATTCTCAAAGTTGAATGATGATGATGTTCGATACTTAGAGGGTATATTGGGTTCCAAAAATGTTGTTCAAGATGAGGACAAGCTTGTCACTTCAAACACTGATTGGATGCATAAATACAAAGGCTCTAGTAAGCTCCTGTTACAACCTAGGACCGCTGATCAGGTTTCTCAGATTCTTAAATATTGTAACTCCAGAAACTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGAGGAAGTGTGCCTGTCTTTGATGAAGTGATTGTTAGTCTTAGTTCTATGAATAAGATCATATCTTTCGACAAGGTTAGTGGAATATTGGTATGTGAAGCTGGGTGCATATTGGAAAATATAATGTCATTCCTGGACAATGAAGGATTTATTATGCCACTAGACTTAGGTGCAAAAGGGAGTTGTCAGATTGGTGGAAATGTTTCAACTAATGCTGGTGGTTTGCGTCTTGTTCGCTATGGATCGCTTCATGGAAGTGTACTTGGTGTTGAAGCTGTTCTGGCAAATGGTACTGTACTTGACATGCTTAAGACATTGCGCAAAGATAATACTGGCTATGATTTGAAACATCTATTTATAGGAAGTGAAGGTTCCTTGGGAATTGTTACTAAGGTTTCAATACTTACCCCACCAAAGTTATCTTCAGTGAATGTGGCTTTTCTTGCTTGTAAAGACTATAGCAGCTGCCAGAAATTGCTACAGGAGGCAAAAGGGAAACTTGGGGAGATTTTATCTGCATTTGAATTTCTGGATGTCCAGTCTATGAATTTGGTTTTAAATCACATGGAAGGTGCACGAAATCCATTGCCGTCATTGCATAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAATCTTCTGACAAGCAAAAGCTTGAAGCATTTCTACTTGGCTCCATGGAGAATGAATTGATATCCGATGGTGTTCTTGCACAAGACATAAACCAAGCATCATCTTTTTGGCTTCTACGTGAGGGTATACCAGAGGCATTGATGAGAGCAGGAGCTGTTTACAAGTATGATTTATCAATACCTCTTGAACACATGTACAATCTTGTTGAAGAAATGCGCTCTAGACTAGGTAACACAGCTAATGTAATAGGATATGGTCACCTTGGAGATGGTAATTTGCATTTAAACATTTCTACTTCTCATTACGATGACAAGGTAGCTCAAGCAAACTCAAAAAAAACTGTTTGGATATGA
Predicted protein sequences of Glyma01g37490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g37490.2 sequence type=predicted peptide gene model=Glyma01g37490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVPGTCSVSELRTSEPPSLTPSKIHTQPPLSIIFNPIPKYRNVTNLTLCASAAIVHRKLPNKFEAEPETMANHNSRFLLRSFIPFFHRRMNSPLLPSATSCPRLTSGTAFDEKFTQLPSNIVRGDHRQVLSFFNPSRNFAETKQWGVGIRHKCFGSMAGSVQRNPRFSKLNDDDVRYLEGILGSKNVVQDEDKLVTSNTDWMHKYKGSSKLLLQPRTADQVSQILKYCNSRNLAVVPQGGNTGLVGGSVPVFDEVIVSLSSMNKIISFDKVSGILVCEAGCILENIMSFLDNEGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGVEAVLANGTVLDMLKTLRKDNTGYDLKHLFIGSEGSLGIVTKVSILTPPKLSSVNVAFLACKDYSSCQKLLQEAKGKLGEILSAFEFLDVQSMNLVLNHMEGARNPLPSLHNFYVLIETTGSDESSDKQKLEAFLLGSMENELISDGVLAQDINQASSFWLLREGIPEALMRAGAVYKYDLSIPLEHMYNLVEEMRSRLGNTANVIGYGHLGDGNLHLNISTSHYDDKILSHIEPYVYEWTSKHRGSISAEHGLGLMKANEIFYSKSHETVQVMASIKNLLDPNHILNPYKVLPQSLIS*
>Glyma01g37490.3 sequence type=predicted peptide gene model=Glyma01g37490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVPGTCSVSELRTSEPPSLTPSKIHTQPPLSIIFNPIPKYRNVTNLTLCASAAIVHRKLPNKFEAEPETMANHNSRFLLRSFIPFFHRRMNSPLLPSATSCPRLTSGTAFDEKFTQLPSNIVRGDHRQVLSFFNPSRNFAETKQWGVGIRHKCFGSMAGSVQRNPRFSKLNDDDVRYLEGILGSKNVVQDEDKLVTSNTDWMHKYKGSSKLLLQPRTADQVSQILKYCNSRNLAVVPQGGNTGLVGGSVPVFDEVIVSLSSMNKIISFDKVSGILVCEAGCILENIMSFLDNEGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGVEAVLANGTVLDMLKTLRKDNTGYDLKHLFIGSEGSLGIVTKVSILTPPKLSSVNVAFLACKDYSSCQKLLQEAKGKLGEILSAFEFLDVQSMNLVLNHMEGARNPLPSLHNFYVLIETTGSDESSDKQKLEAFLLGSMENELISDGVLAQDINQASSFWLLREGIPEALMRAGAVYKYDLSIPLEHMYNLVEEMRSRLGNTANVIGYGHLGDGNLHLNISTSHYDDKVAQANSKKTVWI*