SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66320 | AT | Annotation by Michelle Graham. TAIR10: GATA transcription factor 5 | chr5:26496208-26497309 REVERSE LENGTH=339 | SoyBase | E_val: 5.00E-77 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| KOG1601 | KOG | GATA-4/5/6 transcription factors | JGI | ISS | |
| PTHR10071 | Panther | TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR) | JGI | ISS | |
| PTHR10071:SF113 | Panther | ZINC FINGER (GATA TYPE) FAMILY PROTEIN | JGI | ISS | |
| PF00320 | PFAM | GATA zinc finger | JGI | ISS | |
| UniRef100_G7KGC3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GATA transcription factor n=1 Tax=Medicago truncatula RepID=G7KGC3_MEDTR | SoyBase | E_val: 5.00E-97 | ISS |
| UniRef100_I1J8P1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J8P1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g37450 not represented in the dataset |
Glyma01g37450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g169400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g37450.1 sequence type=CDS gene model=Glyma01g37450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTTACCAAACTCCCTATCCTCAACCCTTTCAATTTCATCATCCTTTGCCTTCTTCCTTCTCCCCTCTCCTTGCAGTTCCAACCACACCACCTCCTCTCTATCTCCCTTTCCCTCAGGCCGAAAAAGAAATGGAGTGCGTGGAGGCAGCGTTGAAGAGCAATTATAGGAAAGAAATGACCTTAAAACTGAGCCCACAAACCTTCACGGAAGAGGTTAGTGTCCAAAACGGCACAACCTGCGACGACTTTTTCGTTAACGACCTCCTTGACTTCTCTCACGTCGAAGAAGAACCCGAACAACAAGAAGACACTCCTTGTGTCTCCCTTCAGCATGAAAACCCAAGCCACGAGCCCTGTACTTTCAAAGACGATTATGCCTCTGTGCCCACTAGCGAGCTTAGCGTCTTGGCGGATGACTTGGCGGACTTGGAGTGGCTGTCTCATTTCGTGGAGGATTCCTTCTCGGAATTCTCTGCGGCCTTCCCCACCGTAACGGAGAACCCAACAGCATGCCTTAAAGAGGCAGAGCCTGAACCGGAAATCCCGGTTTTCTCTTTCAAAACCCCGGTTCAGACCAAAGCAAGAAGCAAGCGAACCAGAAACGGTCTTCGTGTTTGGCCATTCGGTTCACCTTCCTTCACCGATTCTTCCTCAAGCTCCACCACCTCTTCCTCTTCCTCTTCTTCACCCTCTAGCCCCTTGCTAATTTACACCCAAAGCCTCGACCACCTGTGCTCCGAGCCAAATACCAAAAAAATGAAGAAAAAACCCTCTTCCGATACCCTGGCGCCGCGAAGGTGCAGTCATTGCGGCGTGCAGAAAACCCCTCAGTGGAGAACTGGGCCGCTAGGCCCAAAAACACTATGCAACGCGTGTGGGGTCCGCTTCAAGTCGGGCCGGCTCTTACCCGAATACAGGCCTGCTTGTAGCCCAACATTTTCAAGTGAATTACACTCGAACCATCATCGTAAAGTGCTCGAGATGCGGCAAAAGAAGGAGACAGTTTCTGTGGATGAGACTGGTTTTGCCCCTGCTCATGTTGTTCCCAGTTTTTGA
>Glyma01g37450.1 sequence type=predicted peptide gene model=Glyma01g37450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLYQTPYPQPFQFHHPLPSSFSPLLAVPTTPPPLYLPFPQAEKEMECVEAALKSNYRKEMTLKLSPQTFTEEVSVQNGTTCDDFFVNDLLDFSHVEEEPEQQEDTPCVSLQHENPSHEPCTFKDDYASVPTSELSVLADDLADLEWLSHFVEDSFSEFSAAFPTVTENPTACLKEAEPEPEIPVFSFKTPVQTKARSKRTRNGLRVWPFGSPSFTDSSSSSTTSSSSSSSPSSPLLIYTQSLDHLCSEPNTKKMKKKPSSDTLAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKETVSVDETGFAPAHVVPSF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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