SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g37430

Feature Type:gene_model
Chromosome:Gm01
Start:49781352
stop:49784822
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g37430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36220AT Annotation by Michelle Graham. TAIR10: ferulic acid 5-hydroxylase 1 | chr4:17137584-17139619 REVERSE LENGTH=520 SoyBaseE_val: 0ISS
GO:0009699GO-bp Annotation by Michelle Graham. GO Biological Process: phenylpropanoid biosynthetic process SoyBaseN/AISS
GO:0009809GO-bp Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0004497GO-mf Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
GO:0046424GO-mf Annotation by Michelle Graham. GO Molecular Function: ferulate 5-hydroxylase activity SoyBaseN/AISS
KOG0156 KOG Cytochrome P450 CYP2 subfamily JGI ISS
PTHR24298Panther FAMILY NOT NAMED JGI ISS
PTHR24298:SF44Panther JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_G3E7M3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Coniferylaldehyde 5-hydroxylase n=1 Tax=Glycine max RepID=G3E7M3_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1J8P0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J8P0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g37430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g37430
ParalogEvidenceComments
Glyma11g07850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g37430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g169200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g37430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g37430
>Glyma01g37430.1   sequence type=CDS   gene model=Glyma01g37430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACCTCGACCTCGACCCATTCCAGACAAGCATCTTAATCCTCGTCCCAATAGCACTCCTGGTGGCGTTACTATCTCGTACTCGTCGAAGAGCACCCTACCCACCAGGCCCAAAGGGTTTACCAATCATAGGAAACATGTTAATGATGGAGCAGCTAACCCACCGCGGCCTCGCCAACCTGGCCAAACACTACGGCGGCATCTTCCACCTCCGCATGGGGTTCCTCCACATGGTCGCCATCTCCGACCCCGTCGCCGCGCGTCAGGTTCTCCAAGTCCAAGACAACATCTTCTCCAACCGCCCAGCCACCATCGCCATCAGCTACCTTACCTACGACCGCGCCGACATGGCTTTTGCCCACTACGGCCCCTTCTGGCGCCAGATGCGGAAACTCTGCGTCATGAAGCTCTTCAGCCGCAAGCGCGCCGAGTCCTGGCAGTCAGTCCGCGATGAGGTCGACGCCGCCGTTCGCGCCGTCGCTAGCAGCGTCGGAAAGCCCGTCAACATTGGAGAATTAGTGTTTAACCTCACCAAGAACATCATCTACCGCGCCGCGTTCGGGTCGAGTTCCCAAGAAGGCCAGGACGAGTTCATTAAAATACTGCAGGAGTTCTCCAAGCTCTTTGGCGCGTTTAATATTGCGGATTTTATACCCTATCTCGGGTGCGTGGATCCACAAGGTTTGAACTCGAGACTCGCTAGGGCACGTGGCGCGCTCGATAGCTTCATTGATAAGATCATCGATGAGCACGTGCATAAGATGAAGAATGATAAGAGCAGTGAAATTGTTGATGGAGAAACGGACATGGTGGATGAGTTGCTGGCGTTCTACAGCGAGGAGGCGAAGTTGAACAATGAATCGGACGATTTGCAGAACTCTATCAGACTCACTAAGGATAACATCAAGGCTATCATTATGGACGTGATGTTCGGAGGCACGGAAACGGTAGCGTCAGCGATCGAGTGGGCCATGGCGGAGCTCATGAGAAGCCCAGAAGATCAAAAGCGGGTCCAACAAGAGCTGGCGGATGTAGTGGGCCTGGACCGTCGGGCCGAAGAGTCCGATTTCGAGAAACTCACTTATCTCAAATGTGCCCTCAAAGAGACCCTCCGCCTCCACCCTCCGATCCCGCTCCTCCTCCACGAGACGGCGGAGGACGCGACGGTCGGCGGTTACCTCGTCCCCAAGAAGGCGCGTGTCATGATCAACGCGTGGGCCATTGGGAGGGACAAGAACAGCTGGGAGGAACCCGAGAGCTTCAAGCCCGCCCGGTTTCTTAAACCGGGCGTGCCCGATTTCAAAGGGAGCAACTTCGAGTTCATTCCATTCGGGTCGGGTCGCAGATCCTGCCCCGGGATGGTGTTGGGGCTCTACGCGCTCGAGTTGGCGGTGGCGCACCTCCTTCACTGCTTCACGTGGGAATTGCCAGATGGGATGAAGCCAAGTGAGATGGACATGGGTGACGTGTTCGGACTCACCGCTCCAAGATCCACGCGACTCATTGCTGTGCCAACCAAGCGCGTGGTGTGCCCTCTCTTTTAA
Predicted protein sequences of Glyma01g37430
>Glyma01g37430.1   sequence type=predicted peptide   gene model=Glyma01g37430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANLDLDPFQTSILILVPIALLVALLSRTRRRAPYPPGPKGLPIIGNMLMMEQLTHRGLANLAKHYGGIFHLRMGFLHMVAISDPVAARQVLQVQDNIFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWQSVRDEVDAAVRAVASSVGKPVNIGELVFNLTKNIIYRAAFGSSSQEGQDEFIKILQEFSKLFGAFNIADFIPYLGCVDPQGLNSRLARARGALDSFIDKIIDEHVHKMKNDKSSEIVDGETDMVDELLAFYSEEAKLNNESDDLQNSIRLTKDNIKAIIMDVMFGGTETVASAIEWAMAELMRSPEDQKRVQQELADVVGLDRRAEESDFEKLTYLKCALKETLRLHPPIPLLLHETAEDATVGGYLVPKKARVMINAWAIGRDKNSWEEPESFKPARFLKPGVPDFKGSNFEFIPFGSGRRSCPGMVLGLYALELAVAHLLHCFTWELPDGMKPSEMDMGDVFGLTAPRSTRLIAVPTKRVVCPLF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo