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Report for Sequence Feature Glyma01g37393

Feature Type:gene_model
Chromosome:Gm01
Start:49755263
stop:49762118
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g37393
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51120AT Annotation by Michelle Graham. TAIR10: DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding | chr3:18986026-18991886 REVERSE LENGTH=1292 SoyBaseE_val: 0ISS
GO:0006352GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation SoyBaseN/AISS
GO:0007346GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle SoyBaseN/AISS
GO:0016570GO-bp Annotation by Michelle Graham. GO Biological Process: histone modification SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1946 KOG RNA polymerase I transcription factor UAF JGI ISS
PTHR26218Panther FAMILY NOT NAMED JGI ISS
PTHR26218:SF58Panther JGI ISS
PF02201PFAM SWIB/MDM2 domain JGI ISS
PF02213PFAM GYF domain JGI ISS
PF03126PFAM Plus-3 domain JGI ISS
UniRef100_G7KGD4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KGD4_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI00023374C8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023374C8 related cluster n=1 Tax=unknown RepID=UPI00023374C8 SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g37393
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g37393 not represented in the dataset
Glyma01g37393 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g37393
ParalogEvidenceComments
Glyma11g07890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g37393 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g168900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g37393
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g37393
>Glyma01g37393.1   sequence type=CDS   gene model=Glyma01g37393   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCAACCGCTTCAACCGCAGCCGGAGACCGCCGCGGTCGGCGCTAGGGATTTGGAGCAGTCGCGGCTGGTCGGAGTTCCCGTGGCGGAGAGAGCGGGAAACAGTTGCGCAGCGAATTTGCAGGTGACCGTCGTGGACGGTGGTGCCGTTTTTAAACGGAAGCGCGGTCGGCCGGCCAAGGGAGCGCCGAAAGTGGCGCCTCCTGTGAGGCAACAGCAGGACGAGGAGGACGTTTGTTTTATTTGCTTCGACGGTGGCAGCCTCGTTCTCTGTGATCGCCGGGGATGTCCAAAAGCGTATCATCTCGCGTGTATTAAGCGAGACGAAGAGTTTTTTCGATCAAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGCGTTTGTCAGAAGTCGTCACATTATATGTGCTATACTTGCCCGTACTCTTTGTGTAAGGGATGCACAAAAGATGCTGATTTTGTTTGTGTCAGAGAGAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGATGATTGAGAACATAGCCCAGGGAAATAAGGAAAAGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTTCAAGCTAAAAATCCATGGAAAGGTGCTGCTCCTATGAGTTATAAGATTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGCTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAAGCCCAAGAGACAGCCAAAGCTTCTTGATAAGGGTGATTGCTTGGATAGGATAACTTCTGGTGGTGACAGTGGTGTGTCTTTGCCTGAATGCACAAAATGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGCAAATAAAAATAATCTCCGTGATCCTCAACAGAAGTCACAAATTGTTTGTGACTCTAGACTTTTAAATTTGTTTGGAAAAACACGTGTTGGCCACATTGAAATGCTAAAGCTCCTTGAGCCCCACTTTCTTTTAAAAGACAATGGCCCTGCAGAAAATACTTTTGGAGCGGGAATTATTAATGCTGTTGCTAGTGAAGGGGAGGCCATTGACAATTACAATAAACAGTTGATGTTGGTTGATGACAAGAGATGTAAGACACATAATCCAGATGCATATGCTGCTATAGATGTTCACAACATTAACTTGATCTACATGCGGCGAAGTCTGATGGAGAATCTAACTGAAGATACTGAAAAGATTCATGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATATCTAGCAATGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCCGAACCTTACAAAATTGGCACAAGAACAACAGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATATCCATTGCTGAAATTTCTAATCAGGAGTTCTCTGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCAGTGACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTACGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAGCTTAAAGAATATGTGGAGAAGTTGCAGCTACTAAACTCTCCGGAGGAACGTCAACGCAGGCAGCATGAAATTCCAGATGTACACTCCGACCCCAATTTGGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATAGCAATATATTTTCAAAATATCTTGGGTTTGATAGAAAAGAGAGGGGTTCTATTTTTCCAAGAATTTCAAATGGCGCCTCCAACGACATGGGAGGTAAAACACAAGACTTGCCTGCTACCCGAGAACCGGTTGGGAATACATGCACAGTGAAGAATAATATCAACTGTGATGATACAGCTATTGATGATAGCACTAATGCAGTTGTGAAATCAGAAGTGTCCAGTGTTGCACCGGACATTTCATCACCGCTTCTCTTTACTGGGATGCAGCAGTCACTGAATGATTTTTTGAATGATAGATCATGGCATTATCAGGATCCAACTGGGAAGATTCAAGGACCTTTTTCTATGTTGCAGCTATACAAGTGGAATGCAAGTGGATGTTTCCCTCCAGATCTCCGAATATGGAGGGTAGGTGAGAAACAAGATAACTCTATACTGTTAACCGATGCACTAAGTGGGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAGCCAATTGCTCTCTTTAGGGGTCAGTGTTACATTGGATAATAAAGATAATAGTCAGGATGCTGGGAAGAATGGAAAGAATGAAATTTCTGCAGATGGCCAAATTATAGAACAGAGCAAGGAACAAAAGCCACAGGTGGATAATACCTCTACCCAGTCTGATGGCAAAGACGAACCTGTTAGGAGCAATGGAGGGCATGGCCAACTGCATGTATACCCTTCACTACTGCCAACTGCCATTCCTGAGAAATTGAATGAGGATCCTTCTGATAAATTAAGGAAAGGCCATGGGATTGTGGGAAATTCCGAAAATAGAAATAATGGCTCGATCAGGACATCTGATGGGCAGAGTAATAGTGGGCATAGTTATCAGAAGCAATCAGATAGTGAAGAGAATTCAGGGAAATCTTCTGGACAGACCTGGAGACACCCTAATGTAAATAGTTCTTCCGATTGCTTGGTTACCATGTCAGCTCATGTTTCTGGTACAAAAACATCACCGCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCGGCAGCATGTAATACATCTTCTGGACAGACCTGGAGTCACCCTAACGTAAATAGTTCTTCCAATTGCTTGGTTAACACATCAGCCCATGTTTCTGATACAAAATCATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCTTGTAATACATCTTCTGGACAGACCTGGAGACACCCTGATATAAATAGTTCTTCCAATTGCTTAGTTACCACACCAGCTCATGTTTCAGCTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACATCTACATGGCAGGCAATCATTGGTGAGCCCAATGATTTTGATGAATCCGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGAGGATTTAACTGAAGGTTCTAAAAATGATTGTCTCAGTTTTGTTGCAGAGCTTAGCCCAATGCTTGATGCGGGTAAAGGTGATGCACTGAGCTCTACTGGTGATTTAAACTTACCATCTCAGCCGACAGCAGCAGAGGAACCATTACGGCAAGCAGATGTACATCACCATCATCATCAAAGAATTTCTGCGGAGCATCCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAGAACGGTGTTTCAGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCCATTGTTCCATCCCCTGGAACCTTGGGCCTGGCTATAGACACCACTTGGAGACTTGGGTTAGAGAATACACACTTGGGATGGAGTGGAATAGATCAAGGAAATGCAAATGTGGGTTGGGGAGTAGGACAGACGGCAGTGCAGGAAAACAGGAGTTCTAGTTCATACACTTCTGCAGTAACTCCAGGCTTTGGGGATAGCCAAACAAAATATGGCAGTGATCGATTTTCTGTGTCCAGAGATCGGGGTTTTCAAGGTCATAGTAGGGAATCAGGTTTGAGTAGAAGCAGAATTCCATATAACAGGCAACCGTCATATGGTGTTGGAAATGGAGCATCATATAAGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTATTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCATGA
Predicted protein sequences of Glyma01g37393
>Glyma01g37393.1   sequence type=predicted peptide   gene model=Glyma01g37393   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQPLQPQPETAAVGARDLEQSRLVGVPVAERAGNSCAANLQVTVVDGGAVFKRKRGRPAKGAPKVAPPVRQQQDEEDVCFICFDGGSLVLCDRRGCPKAYHLACIKRDEEFFRSKAKWNCGWHICSVCQKSSHYMCYTCPYSLCKGCTKDADFVCVRENKGLCGICMRTIMMIENIAQGNKEKCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLQAKNPWKGAAPMSYKIQSPHELYHLRDDKGSGSENSCIDIESNNLKNKKPKRQPKLLDKGDCLDRITSGGDSGVSLPECTKWASKELLEFVAHMKNGDTSLLSQFDVQTLLLEYANKNNLRDPQQKSQIVCDSRLLNLFGKTRVGHIEMLKLLEPHFLLKDNGPAENTFGAGIINAVASEGEAIDNYNKQLMLVDDKRCKTHNPDAYAAIDVHNINLIYMRRSLMENLTEDTEKIHEKVVGSFVRIRISSNDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVISIAEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKAVTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKELKEYVEKLQLLNSPEERQRRQHEIPDVHSDPNLDSMFESDEDDGESDERKQDSNIFSKYLGFDRKERGSIFPRISNGASNDMGGKTQDLPATREPVGNTCTVKNNINCDDTAIDDSTNAVVKSEVSSVAPDISSPLLFTGMQQSLNDFLNDRSWHYQDPTGKIQGPFSMLQLYKWNASGCFPPDLRIWRVGEKQDNSILLTDALSGKCSKNVSLPFNSQLLSLGVSVTLDNKDNSQDAGKNGKNEISADGQIIEQSKEQKPQVDNTSTQSDGKDEPVRSNGGHGQLHVYPSLLPTAIPEKLNEDPSDKLRKGHGIVGNSENRNNGSIRTSDGQSNSGHSYQKQSDSEENSGKSSGQTWRHPNVNSSSDCLVTMSAHVSGTKTSPHKLGFDLHNPPSPPAACNTSSGQTWSHPNVNSSSNCLVNTSAHVSDTKSSPHKLGFDLHNPPSPPACNTSSGQTWRHPDINSSSNCLVTTPAHVSATKTSPHKLGFDLHNPPSPPACNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGEDLTEGSKNDCLSFVAELSPMLDAGKGDALSSTGDLNLPSQPTAAEEPLRQADVHHHHHQRISAEHPSRSSKVEVGTKNGVSGNQWDSGSENSPIVPSPGTLGLAIDTTWRLGLENTHLGWSGIDQGNANVGWGVGQTAVQENRSSSSYTSAVTPGFGDSQTKYGSDRFSVSRDRGFQGHSRESGLSRSRIPYNRQPSYGVGNGASYKPLPKGQRVCKFYESGYCKKGASCDYWHP*






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