Glyma01g37240 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g37240

Feature Type:	gene_model
Chromosome:	Gm01
Start:	49616497
stop:	49621295
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g37240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36120	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF869) \| chr4:17093213-17096573 REVERSE LENGTH=996	SoyBase	E_val: 1.00E-147	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05911	PFAM	Plant protein of unknown function (DUF869)	JGI		ISS
UniRef100_G7JW57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Filament-like plant protein n=1 Tax=Medicago truncatula RepID=G7JW57_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023374C5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023374C5 related cluster n=1 Tax=unknown RepID=UPI00023374C5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g37240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g37240

Paralog	Evidence	Comments
Glyma11g08061	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g37240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g167200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g37240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g37240

Limit To All Plant Sequences

>Glyma01g37240.3   sequence type=transcript   gene model=Glyma01g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGAGGTGGAGCCCGCAGGAGCGTTTAAACAGTGACCACACACGCGCACATTTGGCCATTTTGTTCATTACCTTAACCCCTGCTCCTTTCCTCGTTTGTCTGTCTCTCTTCTCTTCACACTCCAAAGTCAAAGACTTAAGTCACTCTTTGAGCCCTTCAGGAGCCAACACACCCCATTCAATTCCAATCCTCATTTTCATTCTGCTTTTGTTGCTTCCACCGCATCAACTAAAAAAATTCTATTTTTTCCGGGGTAGGATTTTGAGATGGACCGCCGGGGTTGGCTATGGAAGAAAAGATCATCCGATAAAAACATAAAGGTTGAGAATGAGAAACCAGTGTCTACTTCTGAATTTGTTGGTCCTACCTTGTTTTCTGTGGCACATGTAGGAGATCAGCAAGACAGCAGCAAAAATAAGAACTATGTTCAAATAACAATGGAATCATACGCACATATGTCTGGATTGGAAGATCAAGTTGTAAACTTGGAGGATCAAGTAAAAGCTTTGGAAGAAAAGCTATCTGCAGTTTATTCAGAATTAAATAACAAGGATGATCTAGTTAAACAGCATGCAAAAGTTGCTGAGGAAGCAATCTCAGGTTGGGAGAAAGCTGATGCCGAAGTTGTTTCCTTAAGATGTCAACTTGAATCTTTGTCTCTCTCTAAGCTTACTGTTGATGAGAAAGCTGCTCACCTAGATGAAGCCCTAAAAGAGTGCATGAAGCAGATAAGAACAGTAAAGGAAGAAAGTGACCAGAAACTGCAGGAGGTAATTCTTATGAAATCTCATCAGTGGGAGAAAATCAAGTTAGAACTTGAAGCACAAATAGACAATTTGGATGAAGGACTTCGTGAGTTAGCCAATGAAAATGCTGCCCTTCTAAAATCAGTTCAAGAAAGTTCGAACAAAATAGTGAAACTAAAAGAAGAGAAGTCTGAAGCAGAGGCAGAGGTAGAGCATCTAGAGAAGAGTGTTCAATCAAAAGAAAAAGAAATAACTTCACTAAAGTATGAGCTGCACATGATTTCTAAGGAGCTGGATATCCGTAATGAAGAGAAGAATATGATTATGAGATCGGCAGAAGTGGCAAACAAGCAACACACTGAGGATGTCAAGAACATCACCAAGCTAGAAAGTGAGTGCCAACGACTTCGTGGTCTTTTGAGAAAAAAGTTACCTGGGCCTGCTGCATTGGCACAAATGAAGTTAGAAGTTGAGAGTTCACACCATGTCTTCAGTGCAACCCATCTGAGAAAAACTAGTTCAAAAACTGATAGCCTGCAAGAATCCGAGTTTCTTACCAAACAGTTGAAGGTGTTGGAAGAAGAAACAAAGACATTGAAAGAAGCATTGGCCTCAAGTAATGCTGAACTGCAGGCTTCTAGAAACTTGTATGCTAAAACGGTTGGCAGGCTTAAGTGCTTGGAAGCAGAGATGCATCAAGAAAGAAACGCCCAGAAAGCAATTTTGGCAACCAATTATGGAAACTCCTTCAGTAGAGTTTATAGCTATCCACCAACCATCACTTCTATCCCTGACAATGGGCATGAGGATTCAGAAAGTCCTGTTGAGTCAAGTGCAGCATCAATTCCTGACCATTCTGATATCAGGAGGATTGGAAGTGTAGGTAAATTTGAGAATCATAAGACTGAAACTATCTCAGAACTGATGGATGACTTTCTGGAAGTGGAGAAGATGGCATGTTTATCAGACAATGGTGGTGTACCTCTTTGCATCATTAGTAAAGCTAATGATGATGCTGAAGATAAAAAGGAGACTAGCTGTTTATCTTCAAATAAAAATTGTTTTGATGGGACAAACCAAACAATAGAACCTGAGGCAGCTGAATATGATGAGCATATGCAAGATCTTAAGGAAAAAAGGATGATGTTAGAGGAAAACATGCAGCTTCTAGAAGAACTGAAAGCACAATTGGTGTCGTCTAATAAATCATGTAGTTTAGCTGAGATTCAGCTGAAATGCATGACTGAGTCTTACAAGTCACTTCAAACACGTGTAGAGGAGTTAGAAGCTGAAAATAAGTATTTAAAGGAAAAGATGGATGAGCTAAAGAATGATCTTGCAGAGGAAAAACAAAGTCATCATGATGCTTTGGTGAGGTACAGAGAAATTAAAGAGAAAATGCAAAGGGACAAGTGCTTGGTGTGTGCAGCAAATTCGGTGGCAAATTCTGGGAAGGATAAAGAGCTAGCAGCTGCAGAGAAAAAGCTGGCAGAATGTCAGGAAACTCTGTCTATACTTGGTAGGCAATTGCAAGCTATGTGCCCTCAGATAGGGGTAACCATGACTCATCATAGTAAAAGGCTTCAAATGAATGAAAAGTTAGCCAAACCAACTTATGGCTGGTCAAATTCTTATGGGTCATGTAACTCAAATGAAATTGATCATGCTGAGGCATGTAGCATAGTGTCTGACATTCAAGGAGTGACTGATGAGTTTTCATCGCATAACTCTGGTGCCACATCATGTCTTTCAGACACCGAAGGCAACTTTTGGTTAAACACTTGAGTAACTCTTAAGTAGGCTCAAACCACCCAGGTTAAACTCTTACTGAATCAAATTCCCATTCTTCTGCCACTGTTACATGGAAGAATGCTCATGGTTTGAGCCACTTCTTTTTGTCAGGAGAGTAGTCACTAACATTGTTAATTCTCAAGTGTCATCGAGAGCTCCCCGATGATGTTGTACATAGACTATATAGTCAAATTTTGTGGAGAATGTTGTGTGTAATTCTCTTCAGTATGTTGATTTTGGGTAAACTTTGGTTCTTATTCCAGCACTTGTATTCCATGAATCTGTGAGGGTTCACCAATCTGGTTATAAAACATACAGATCCTTTTTGCTCTTTCGGCCTCCATCAAAGAGACAATGAAACTCTCACTTTTATCTCGCAATTGTGTACTGAAATTGGTAAGTTGTTAACAAGTTATTAG

Coding sequences of Glyma01g37240

Limit To All Plant Sequences

>Glyma01g37240.2   sequence type=CDS   gene model=Glyma01g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCGCCGGGGTTGGCTATGGAAGAAAAGATCATCCGATAAAAACATAAAGGTTGAGAATGAGAAACCAGTGTCTACTTCTGAATTTGTTGGTCCTACCTTGTTTTCTGTGGCACATGTAGGAGATCAGCAAGACAGCAGCAAAAATAAGAACTATGTTCAAATAACAATGGAATCATACGCACATATGTCTGGATTGGAAGATCAAGTTGTAAACTTGGAGGATCAAGTAAAAGCTTTGGAAGAAAAGCTATCTGCAGTTTATTCAGAATTAAATAACAAGGATGATCTAGTTAAACAGCATGCAAAAGTTGCTGAGGAAGCAATCTCAGGTTGGGAGAAAGCTGATGCCGAAGTTGTTTCCTTAAGATGTCAACTTGAATCTTTGTCTCTCTCTAAGCTTACTGTTGATGAGAAAGCTGCTCACCTAGATGAAGCCCTAAAAGAGTGCATGAAGCAGATAAGAACAGTAAAGGAAGAAAGTGACCAGAAACTGCAGGAGGTAATTCTTATGAAATCTCATCAGTGGGAGAAAATCAAGTTAGAACTTGAAGCACAAATAGACAATTTGGATGAAGGACTTCGTGAGTTAGCCAATGAAAATGCTGCCCTTCTAAAATCAGTTCAAGAAAGTTCGAACAAAATAGTGAAACTAAAAGAAGAGAAGTCTGAAGCAGAGGCAGAGGTAGAGCATCTAGAGAAGAGTGTTCAATCAAAAGAAAAAGAAATAACTTCACTAAAGTATGAGCTGCACATGATTTCTAAGGAGCTGGATATCCGTAATGAAGAGAAGAATATGATTATGAGATCGGCAGAAGTGGCAAACAAGCAACACACTGAGGATGTCAAGAACATCACCAAGCTAGAAAGTGAGTGCCAACGACTTCGTGGTCTTTTGAGAAAAAAGTTACCTGGGCCTGCTGCATTGGCACAAATGAAGTTAGAAGTTGAGAGTTCACACCATGTCTTCAGTGCAACCCATCTGAGAAAAACTAGTTCAAAAACTGATAGCCTGCAAGAATCCGAGTTTCTTACCAAACAGTTGAAGGTGTTGGAAGAAGAAACAAAGACATTGAAAGAAGCATTGGCCTCAAGTAATGCTGAACTGCAGGCTTCTAGAAACTTGTATGCTAAAACGGTTGGCAGGCTTAAGTGCTTGGAAGCAGAGATGCATCAAGAAAGAAACGCCCAGAAAGCAATTTTGGCAACCAATTATGGAAACTCCTTCAGTAGAGTTTATAGCTATCCACCAACCATCACTTCTATCCCTGACAATGGGCATGAGGATTCAGAAAGTCCTGTTGAGTCAAGTGCAGCATCAATTCCTGACCATTCTGATATCAGGAGGATTGGAAGTGTAGGTAAATTTGAGAATCATAAGACTGAAACTATCTCAGAACTGATGGATGACTTTCTGGAAGTGGAGAAGATGGCATGTTTATCAGACAATGGTGGTGTACCTCTTTGCATCATTAGTAAAGCTAATGATGATGCTGAAGATAAAAAGGAGACTAGCTGTTTATCTTCAAATAAAAATTGTTTTGATGGGACAAACCAAACAATAGAACCTGAGGCAGCTGAATATGATGAGCATATGCAAGATCTTAAGGAAAAAAGGATGATGTTAGAGGAAAACATGCAGCTTCTAGAAGAACTGAAAGCACAATTGGTGTCGTCTAATAAATCATGTAGTTTAGCTGAGATTCAGCTGAAATGCATGACTGAGTCTTACAAGTCACTTCAAACACGTGTAGAGGAGTTAGAAGCTGAAAATAAGTATTTAAAGGAAAAGATGGATGAGCTAAAGAATGATCTTGCAGAGGAAAAACAAAGTCATCATGATGCTTTGGTGAGGTACAGAGAAATTAAAGAGAAAATGCAAAGGGACAAGTGCTTGGTGTGTGCAGCAAATTCGGTGGCAAATTCTGGGAAGGATAAAGAGCTAGCAGCTGCAGAGAAAAAGCTGGCAGAATGTCAGGAAACTCTGTCTATACTTGGTAGGCAATTGCAAGCTATGTGCCCTCAGATAGGGGTAACCATGACTCATCATAGTAAAAGGCTTCAAATGAATGAAAAGTTAGCCAAACCAACTTATGGCTGGTCAAATTCTTATGGGTCATGTAACTCAAATGAAATTGATCATGCTGAGGCATGTAGCATAGTGTCTGACATTCAAGGAGTGACTGATGAGTTTTCATCGCATAACTCTGGTGCCACATCATGTCTTTCAGACACCGAAGGCAACTTTTGGTTAAACACTTGA

>Glyma01g37240.3   sequence type=CDS   gene model=Glyma01g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCGCCGGGGTTGGCTATGGAAGAAAAGATCATCCGATAAAAACATAAAGGTTGAGAATGAGAAACCAGTGTCTACTTCTGAATTTGTTGGTCCTACCTTGTTTTCTGTGGCACATGTAGGAGATCAGCAAGACAGCAGCAAAAATAAGAACTATGTTCAAATAACAATGGAATCATACGCACATATGTCTGGATTGGAAGATCAAGTTGTAAACTTGGAGGATCAAGTAAAAGCTTTGGAAGAAAAGCTATCTGCAGTTTATTCAGAATTAAATAACAAGGATGATCTAGTTAAACAGCATGCAAAAGTTGCTGAGGAAGCAATCTCAGGTTGGGAGAAAGCTGATGCCGAAGTTGTTTCCTTAAGATGTCAACTTGAATCTTTGTCTCTCTCTAAGCTTACTGTTGATGAGAAAGCTGCTCACCTAGATGAAGCCCTAAAAGAGTGCATGAAGCAGATAAGAACAGTAAAGGAAGAAAGTGACCAGAAACTGCAGGAGGTAATTCTTATGAAATCTCATCAGTGGGAGAAAATCAAGTTAGAACTTGAAGCACAAATAGACAATTTGGATGAAGGACTTCGTGAGTTAGCCAATGAAAATGCTGCCCTTCTAAAATCAGTTCAAGAAAGTTCGAACAAAATAGTGAAACTAAAAGAAGAGAAGTCTGAAGCAGAGGCAGAGGTAGAGCATCTAGAGAAGAGTGTTCAATCAAAAGAAAAAGAAATAACTTCACTAAAGTATGAGCTGCACATGATTTCTAAGGAGCTGGATATCCGTAATGAAGAGAAGAATATGATTATGAGATCGGCAGAAGTGGCAAACAAGCAACACACTGAGGATGTCAAGAACATCACCAAGCTAGAAAGTGAGTGCCAACGACTTCGTGGTCTTTTGAGAAAAAAGTTACCTGGGCCTGCTGCATTGGCACAAATGAAGTTAGAAGTTGAGAGTTCACACCATGTCTTCAGTGCAACCCATCTGAGAAAAACTAGTTCAAAAACTGATAGCCTGCAAGAATCCGAGTTTCTTACCAAACAGTTGAAGGTGTTGGAAGAAGAAACAAAGACATTGAAAGAAGCATTGGCCTCAAGTAATGCTGAACTGCAGGCTTCTAGAAACTTGTATGCTAAAACGGTTGGCAGGCTTAAGTGCTTGGAAGCAGAGATGCATCAAGAAAGAAACGCCCAGAAAGCAATTTTGGCAACCAATTATGGAAACTCCTTCAGTAGAGTTTATAGCTATCCACCAACCATCACTTCTATCCCTGACAATGGGCATGAGGATTCAGAAAGTCCTGTTGAGTCAAGTGCAGCATCAATTCCTGACCATTCTGATATCAGGAGGATTGGAAGTGTAGGTAAATTTGAGAATCATAAGACTGAAACTATCTCAGAACTGATGGATGACTTTCTGGAAGTGGAGAAGATGGCATGTTTATCAGACAATGGTGGTGTACCTCTTTGCATCATTAGTAAAGCTAATGATGATGCTGAAGATAAAAAGGAGACTAGCTGTTTATCTTCAAATAAAAATTGTTTTGATGGGACAAACCAAACAATAGAACCTGAGGCAGCTGAATATGATGAGCATATGCAAGATCTTAAGGAAAAAAGGATGATGTTAGAGGAAAACATGCAGCTTCTAGAAGAACTGAAAGCACAATTGGTGTCGTCTAATAAATCATGTAGTTTAGCTGAGATTCAGCTGAAATGCATGACTGAGTCTTACAAGTCACTTCAAACACGTGTAGAGGAGTTAGAAGCTGAAAATAAGTATTTAAAGGAAAAGATGGATGAGCTAAAGAATGATCTTGCAGAGGAAAAACAAAGTCATCATGATGCTTTGGTGAGGTACAGAGAAATTAAAGAGAAAATGCAAAGGGACAAGTGCTTGGTGTGTGCAGCAAATTCGGTGGCAAATTCTGGGAAGGATAAAGAGCTAGCAGCTGCAGAGAAAAAGCTGGCAGAATGTCAGGAAACTCTGTCTATACTTGGTAGGCAATTGCAAGCTATGTGCCCTCAGATAGGGGTAACCATGACTCATCATAGTAAAAGGCTTCAAATGAATGAAAAGTTAGCCAAACCAACTTATGGCTGGTCAAATTCTTATGGGTCATGTAACTCAAATGAAATTGATCATGCTGAGGCATGTAGCATAGTGTCTGACATTCAAGGAGTGACTGATGAGTTTTCATCGCATAACTCTGGTGCCACATCATGTCTTTCAGACACCGAAGGCAACTTTTGGTTAAACACTTGA

Predicted protein sequences of Glyma01g37240

Limit To All Plant Sequences

>Glyma01g37240.2   sequence type=predicted peptide   gene model=Glyma01g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRRGWLWKKRSSDKNIKVENEKPVSTSEFVGPTLFSVAHVGDQQDSSKNKNYVQITMESYAHMSGLEDQVVNLEDQVKALEEKLSAVYSELNNKDDLVKQHAKVAEEAISGWEKADAEVVSLRCQLESLSLSKLTVDEKAAHLDEALKECMKQIRTVKEESDQKLQEVILMKSHQWEKIKLELEAQIDNLDEGLRELANENAALLKSVQESSNKIVKLKEEKSEAEAEVEHLEKSVQSKEKEITSLKYELHMISKELDIRNEEKNMIMRSAEVANKQHTEDVKNITKLESECQRLRGLLRKKLPGPAALAQMKLEVESSHHVFSATHLRKTSSKTDSLQESEFLTKQLKVLEEETKTLKEALASSNAELQASRNLYAKTVGRLKCLEAEMHQERNAQKAILATNYGNSFSRVYSYPPTITSIPDNGHEDSESPVESSAASIPDHSDIRRIGSVGKFENHKTETISELMDDFLEVEKMACLSDNGGVPLCIISKANDDAEDKKETSCLSSNKNCFDGTNQTIEPEAAEYDEHMQDLKEKRMMLEENMQLLEELKAQLVSSNKSCSLAEIQLKCMTESYKSLQTRVEELEAENKYLKEKMDELKNDLAEEKQSHHDALVRYREIKEKMQRDKCLVCAANSVANSGKDKELAAAEKKLAECQETLSILGRQLQAMCPQIGVTMTHHSKRLQMNEKLAKPTYGWSNSYGSCNSNEIDHAEACSIVSDIQGVTDEFSSHNSGATSCLSDTEGNFWLNT*

>Glyma01g37240.3   sequence type=predicted peptide   gene model=Glyma01g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRRGWLWKKRSSDKNIKVENEKPVSTSEFVGPTLFSVAHVGDQQDSSKNKNYVQITMESYAHMSGLEDQVVNLEDQVKALEEKLSAVYSELNNKDDLVKQHAKVAEEAISGWEKADAEVVSLRCQLESLSLSKLTVDEKAAHLDEALKECMKQIRTVKEESDQKLQEVILMKSHQWEKIKLELEAQIDNLDEGLRELANENAALLKSVQESSNKIVKLKEEKSEAEAEVEHLEKSVQSKEKEITSLKYELHMISKELDIRNEEKNMIMRSAEVANKQHTEDVKNITKLESECQRLRGLLRKKLPGPAALAQMKLEVESSHHVFSATHLRKTSSKTDSLQESEFLTKQLKVLEEETKTLKEALASSNAELQASRNLYAKTVGRLKCLEAEMHQERNAQKAILATNYGNSFSRVYSYPPTITSIPDNGHEDSESPVESSAASIPDHSDIRRIGSVGKFENHKTETISELMDDFLEVEKMACLSDNGGVPLCIISKANDDAEDKKETSCLSSNKNCFDGTNQTIEPEAAEYDEHMQDLKEKRMMLEENMQLLEELKAQLVSSNKSCSLAEIQLKCMTESYKSLQTRVEELEAENKYLKEKMDELKNDLAEEKQSHHDALVRYREIKEKMQRDKCLVCAANSVANSGKDKELAAAEKKLAECQETLSILGRQLQAMCPQIGVTMTHHSKRLQMNEKLAKPTYGWSNSYGSCNSNEIDHAEACSIVSDIQGVTDEFSSHNSGATSCLSDTEGNFWLNT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain