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Report for Sequence Feature Glyma01g37150

Feature Type:gene_model
Chromosome:Gm01
Start:49557208
stop:49558582
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g37150
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51220AT Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF827) | chr3:19021943-19022612 REVERSE LENGTH=186 SoyBaseE_val: 6.00E-28ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1J8L6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J8L6_SOYBN SoyBaseE_val: 1.00E-138ISS
UniRef100_Q7XT19UniRef Annotation by Michelle Graham. Most informative UniRef hit: OSJNBb0050O03.3 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XT19_ORYSJ SoyBaseE_val: 7.00E-17ISS

Expression Patterns of Glyma01g37150
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g37150 not represented in the dataset
Glyma01g37150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g37150
ParalogEvidenceComments
Glyma11g08120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g37150 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g166500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g37150
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g37150
>Glyma01g37150.1   sequence type=CDS   gene model=Glyma01g37150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAGAAAGGTGGTGGAATGGTGATCATGGAACGCGCAGAGATTGACACTCGTGCCCCATTCAAGTCTGTTAAAGAAGCAGTTATGTTGTTCGGAGAAAAAGTACTAGTTGGGGAAATTTATGCCAACAAGCTCAAAGAGATGCGAGTTGAAGCAAGTGGAAGTGGGAGTCCACAAGCCAGAGGTGGAGCATTGGCAACTGAGCTGGAAGAAACAAAGCAAAATCTTGAGGGAGCTAGAGATGAAGCTAGCATGTTGGTTAAGCGAATCAAGTCCCTTAAGAAGGAACTTGAACAAACAAAGAAAGAACTAGAAGACACAAAAGCAAGAGAGCTCAGGTTGCTGCAGCGACGGGACGATCCGGAGATTGAAGACCTCAAGTTCATTGCAAATGCAACAACCAATGTGGAAATCAAAACACAAAGCAGTGATGAGGAGAAAGCAGAAGAGTTCCAAAAAACAAGATACGTGAAATTCGCTAGTCCTCATGCACTAGCTCAAGTTATTCCTAACAAGGGTGAATTGCTTGGGAGATCTCCTTCAGTTAAGAAGCCAAAGAGGAAGCCATTGATGTCTTTGATAGGATGGCTTTTCTCTAAAAAGAAAGGGAGCCACGCAAGTTGA
Predicted protein sequences of Glyma01g37150
>Glyma01g37150.1   sequence type=predicted peptide   gene model=Glyma01g37150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKKGGGMVIMERAEIDTRAPFKSVKEAVMLFGEKVLVGEIYANKLKEMRVEASGSGSPQARGGALATELEETKQNLEGARDEASMLVKRIKSLKKELEQTKKELEDTKARELRLLQRRDDPEIEDLKFIANATTNVEIKTQSSDEEKAEEFQKTRYVKFASPHALAQVIPNKGELLGRSPSVKKPKRKPLMSLIGWLFSKKKGSHAS*






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