SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35920 | AT | Annotation by Michelle Graham. TAIR10: PLAC8 family protein | chr4:17012106-17014192 REVERSE LENGTH=421 | SoyBase | E_val: 0 | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0007231 | GO-bp | Annotation by Michelle Graham. GO Biological Process: osmosensory signaling pathway | SoyBase | N/A | ISS |
| GO:0007638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mechanosensory behavior | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0033500 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate homeostasis | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005887 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR15907 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR15907:SF3 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF04749 | PFAM | PLAC8 family | JGI | ISS | |
| UniRef100_G7LB65 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cornifelin n=1 Tax=Medicago truncatula RepID=G7LB65_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J8I6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J8I6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g36860 not represented in the dataset |
Glyma01g36860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g08430 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g164000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g36860.2 sequence type=transcript gene model=Glyma01g36860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTGGCATCATCGTAATAACAGTCAAAAGCAGAGGGCACTTGCGTAGTGCTTGAGGTGGGGTTCACATGCGGCCAAGCTCCACACTGCAGAAAACAGAACCGAACCGAAACTGTGAGCGATAAGAGCGAGCAAGAGAGAGACAAAGAGTGATTCAGAGGGAGAAAGCTCCCTCGCACAAAGCAATGCCTGCCATCACCTGAATTCTATGCTCCTTTTCCCTTTATCCGCATTGCTCTCTTCTCTTTCACCGTTTTTTGTCTCTGAATATCCAAGATCTTCAAGGACAATGTTATCTCTGAGAAACATTTTTCTGAATAGCGCTTGATCCGGCGTGAAACATTCAATTGTTGATAATTTACTGCTTCACTTTGGGCTGTGCGAGTGGAGCAGCCTATTTTACTATTAAAGGCATATTCTCTTACAAGGTTGATTTGCAGAGAGCATGGCGTCTTGGGATCAAATGGGGGAACTTGCAAATGTGGCACAGTTGACTGGTGTAGACGCTGTGCGGTTGATTGGGATGATTGTGAGAGCTGCAAGCACTGCACGGATGCATAAGAAAAACTGTAGGCAGTTTGCACAGCATCTGAAGTTGATTGGGAACTTGCTGGAGCAGCTCAAGATCTCGGAGCTGAAGAAGTACCCCGAAACTAGGGAACCTCTGGAGCAGCTCGAAGATGCTCTAAGAAGGTCTTACATATTGGTCAATAGTTGTCAAGACCGTAGCTACCTTTATTTGCTGGCTATGGGCTGGAACATTGTTTATCAGTTCAGGAAGGCTCAGAACGAAATTGATAGATACCTGCGTCTTGTTCCTCTCATTACTCTTGTGGACAATGCTCGAGTCAGGGAGAGACTTGAAGTTATTGAAATGGATCAACGTGAATACACATTGGATGATGAGGACCAAAAGGCACAAACAGTTATTTTTAAACCTGAGCCTGACAAAGATGACACTGCTGTGTTGAAGAAAACACTATCCTGTTCTTACCCCAACTGTTCTTTCACTGAAGCACTAAAAAAAGAAAATGAAAAGCTTAAACTAGAGCTACAACGGTCTCAAGCAAATTTGGATATGAATCAGTGTGAAGTCATTCAACGTTTACTAGATGTCACAGAAGTTGCAGCTTATTCTGTTCCAGCCAAGTGTTCACCGGAGAAAAGTCACAAGAAAGAGGAATACAATTACTCTGATGCCAACAGTGACAAGGACCATTCATCTGATGAAAAATACCATGCAAAAATTGACAAGCATTCACCATCAAGATATTCAGTTGCGCAAAAGGATCTGGCATCAACTGGAGGTTCATATCAGCAGGAAGATTGGCACACTGATTTACTTGCTTGTTGTTCTGAACCTTCTCTTTGTATGAAGACATTTTTCTACCCTTGTGGAACATTTTCAAAGATTGCTTCTGTTGCAAGAAACAGGCCCATATGTAAGTTAGCTATAATGCACTGTGTTAGTATTAAAGTGATGAATTTCTGATTGCTGTTTGATTTTAAATGTTTCCTGCCAACAAAGCTTGAATTTAAGATCAAGTTGACATCAATCTTAAGTTCTTAACACTATACTGTATGGGTTCAAATTAGATTGTGCTCCTTATTCAAATCTGTTCCTTGTTTACTATGACATTTTTGGGAAGCTAGAATGATGAAATCTGGAATCTTTACTTCATCAGCTTAGCTGAAGATTAGATTAGGGTTTCCTACAGCCACCACACTGCATTACAGAACAAGATCACTTGTTGATGCTTCTTCCAGAG
>Glyma01g36860.1 sequence type=CDS gene model=Glyma01g36860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCTTGGGATCAAATGGGGGAACTTGCAAATGTGGCACAGTTGACTGGTGTAGACGCTGTGCGGTTGATTGGGATGATTGTGAGAGCTGCAAGCACTGCACGGATGCATAAGAAAAACTGTAGGCAGTTTGCACAGCATCTGAAGTTGATTGGGAACTTGCTGGAGCAGCTCAAGATCTCGGAGCTGAAGAAGTACCCCGAAACTAGGGAACCTCTGGAGCAGCTCGAAGATGCTCTAAGAAGGTCTTACATATTGGTCAATAGTTGTCAAGACCGTAGCTACCTTTATTTGCTGGCTATGGGCTGGAACATTGTTTATCAGTTCAGGAAGGCTCAGAACGAAATTGATAGATACCTGCGTCTTGTTCCTCTCATTACTCTTGTGGACAATGCTCGAGTCAGGGAGAGACTTGAAGTTATTGAAATGGATCAACGTGAATACACATTGGATGATGAGGACCAAAAGGCACAAACAGTTATTTTTAAACCTGAGCCTGACAAAGATGACACTGCTGTGTTGAAGAAAACACTATCCTGTTCTTACCCCAACTGTTCTTTCACTGAAGCACTAAAAAAAGAAAATGAAAAGCTTAAACTAGAGCTACAACGGTCTCAAGCAAATTTGGATATGAATCAGTGTGAAGTCATTCAACGTTTACTAGATGTCACAGAAGTTGCAGCTTATTCTGTTCCAGCCAAGTGTTCACCGGAGAAAAGTCACAAGAAAGAGGAATACAATTACTCTGATGCCAACAGTGACAAGGACCATTCATCTGATGAAAAATACCATGCAAAAATTGACAAGCATTCACCATCAAGATATTCAGTTGCGCAAAAGGATCTGGCATCAACTGGAGGTTCATATCAGCAGGAAGATTGGCACACTGATTTACTTGCTTGTTGTTCTGAACCTTCTCTTTGTATGAAGACATTTTTCTACCCTTGTGGAACATTTTCAAAGATTGCTTCTGTTGCAAGAAACAGGCCCATATCCTCTGGAGAAGCATGTAATGACTTGATGGCATATTCTTTAATTTTGTCTTGTTGTTGCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGTGGGCTTAGTGGTTCTAAGACCAAAACAAGCCCTCCACCCTCTCAGTACATGGAATCTTAA >Glyma01g36860.2 sequence type=CDS gene model=Glyma01g36860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCTTGGGATCAAATGGGGGAACTTGCAAATGTGGCACAGTTGACTGGTGTAGACGCTGTGCGGTTGATTGGGATGATTGTGAGAGCTGCAAGCACTGCACGGATGCATAAGAAAAACTGTAGGCAGTTTGCACAGCATCTGAAGTTGATTGGGAACTTGCTGGAGCAGCTCAAGATCTCGGAGCTGAAGAAGTACCCCGAAACTAGGGAACCTCTGGAGCAGCTCGAAGATGCTCTAAGAAGGTCTTACATATTGGTCAATAGTTGTCAAGACCGTAGCTACCTTTATTTGCTGGCTATGGGCTGGAACATTGTTTATCAGTTCAGGAAGGCTCAGAACGAAATTGATAGATACCTGCGTCTTGTTCCTCTCATTACTCTTGTGGACAATGCTCGAGTCAGGGAGAGACTTGAAGTTATTGAAATGGATCAACGTGAATACACATTGGATGATGAGGACCAAAAGGCACAAACAGTTATTTTTAAACCTGAGCCTGACAAAGATGACACTGCTGTGTTGAAGAAAACACTATCCTGTTCTTACCCCAACTGTTCTTTCACTGAAGCACTAAAAAAAGAAAATGAAAAGCTTAAACTAGAGCTACAACGGTCTCAAGCAAATTTGGATATGAATCAGTGTGAAGTCATTCAACGTTTACTAGATGTCACAGAAGTTGCAGCTTATTCTGTTCCAGCCAAGTGTTCACCGGAGAAAAGTCACAAGAAAGAGGAATACAATTACTCTGATGCCAACAGTGACAAGGACCATTCATCTGATGAAAAATACCATGCAAAAATTGACAAGCATTCACCATCAAGATATTCAGTTGCGCAAAAGGATCTGGCATCAACTGGAGGTTCATATCAGCAGGAAGATTGGCACACTGATTTACTTGCTTGTTGTTCTGAACCTTCTCTTTGTATGAAGACATTTTTCTACCCTTGTGGAACATTTTCAAAGATTGCTTCTGTTGCAAGAAACAGGCCCATATGTAAGTTAGCTATAATGCACTGTGTTAGTATTAAAGTGATGAATTTCTGA
>Glyma01g36860.1 sequence type=predicted peptide gene model=Glyma01g36860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASWDQMGELANVAQLTGVDAVRLIGMIVRAASTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYILVNSCQDRSYLYLLAMGWNIVYQFRKAQNEIDRYLRLVPLITLVDNARVRERLEVIEMDQREYTLDDEDQKAQTVIFKPEPDKDDTAVLKKTLSCSYPNCSFTEALKKENEKLKLELQRSQANLDMNQCEVIQRLLDVTEVAAYSVPAKCSPEKSHKKEEYNYSDANSDKDHSSDEKYHAKIDKHSPSRYSVAQKDLASTGGSYQQEDWHTDLLACCSEPSLCMKTFFYPCGTFSKIASVARNRPISSGEACNDLMAYSLILSCCCYTCCVRRKLRKMLNITGGFIDDFLSHLMCCCCALVQEWREVEIRGLSGSKTKTSPPPSQYMES* >Glyma01g36860.2 sequence type=predicted peptide gene model=Glyma01g36860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASWDQMGELANVAQLTGVDAVRLIGMIVRAASTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYILVNSCQDRSYLYLLAMGWNIVYQFRKAQNEIDRYLRLVPLITLVDNARVRERLEVIEMDQREYTLDDEDQKAQTVIFKPEPDKDDTAVLKKTLSCSYPNCSFTEALKKENEKLKLELQRSQANLDMNQCEVIQRLLDVTEVAAYSVPAKCSPEKSHKKEEYNYSDANSDKDHSSDEKYHAKIDKHSPSRYSVAQKDLASTGGSYQQEDWHTDLLACCSEPSLCMKTFFYPCGTFSKIASVARNRPICKLAIMHCVSIKVMNF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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