SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35830 | AT | Annotation by Michelle Graham. TAIR10: aconitase 1 | chr4:16973007-16977949 REVERSE LENGTH=898 | SoyBase | E_val: 0 | ISS |
| GO:0000302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species | SoyBase | N/A | ISS |
| GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0006101 | GO-bp | Annotation by Michelle Graham. GO Biological Process: citrate metabolic process | SoyBase | N/A | ISS |
| GO:0006102 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isocitrate metabolic process | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0006972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic response | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to iron ion | SoyBase | N/A | ISS |
| GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0003994 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aconitate hydratase activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0048027 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mRNA 5'-UTR binding | SoyBase | N/A | ISS |
| GO:0051539 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding | SoyBase | N/A | ISS |
| KOG0452 | KOG | RNA-binding translational regulator IRP (aconitase superfamily) | JGI | ISS | |
| PTHR11670 | Panther | ACONITASE | JGI | ISS | |
| PTHR11670:SF1 | Panther | 3-ISOPROPYLMALATE DEHYDRATASE SUBUNIT | JGI | ISS | |
| PF00330 | PFAM | Aconitase family (aconitate hydratase) | JGI | ISS | |
| PF00694 | PFAM | Aconitase C-terminal domain | JGI | ISS | |
| UniRef100_G7JYQ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aconitate hydratase n=1 Tax=Medicago truncatula RepID=G7JYQ8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J8H1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J8H1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g36750 not represented in the dataset |
Glyma01g36750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g08550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g162800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g36750.1 sequence type=CDS gene model=Glyma01g36750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACTGAGAACCCTTTCAATAGCATTTTGAGGACGCTCGAGAAGCCCGGCGGCGCTGGCGAGTTTGGAAAGTACTTTAGCTTGCCCGCTCTCAACGATCCTAGAATCGATAGACTTCCTTACTCTGTGAGGATACTTTTGGAATCTGCAATCCGTAACTGTGATGAGTTTCAAGTTAAGAGTAACGACATTGAAAAAATTATTGATTGGGAGAATACCTCTCCCAAGCTGGTGGAGATTCCATTCAAGCCAGCTAGAGTGCTTCTGCAGGACTTTACTGGGGTGCCTGCTGTGGTTGATCTTGCTTGCATGCGAGATGCAATGAACAAACTTGGTGGTGATTCTAATAAAATTAACCCCTTGGTACCAGTTGATCTTGTCATTGATCACTCTGTTCAAGTTGATGTGGCAAGATCAGAAAATGCTGTCCAGGCAAATATGGAACTTGAATTCCAAAGAAACAAGGAAAGATTTGGTTTCCTCAAATGGGGTTCTAATGCATTCAATAATATGCTTGTCGTTCCTCCTGGATCAGGGATAGTTCATCAGGTTAATTTAGAATACCTTGGTAGAGTTGTGTTCAACACAAATGGTGTGCTTTATCCAGACAGCGTTGTCGGAACTGATTCACACACTACTATGATAGATGGCCTGGGTGTTGCTGGATGGGGAGTTGGTGGAATAGAAGCAGAAGCTGCAATGCTTGGCCAGCCCATGAGCATGGTCCTACCGGGTGTTGTTGGGTTCAAATTATTAGGCAAACTACGAGATGGTGTCACAGCTACTGACTTGGTGTTGACTGTTACTCAAATGCTAAGAAAGCATGGGGTTGTTGGCAAGTTTGTAGAGTTTTATGGGGAAGGCATGAGTGAACTGTCTTTGGCAGATCGTGCCACTATAGCAAACATGTCTCCTGAGTATGGTGCAACCATGGGCTTCTTTCCTGTGGATCATGTCACTTTGCAATATTTGAGACTGACTGGCAGAAGTGATGAGACTGTTTCTATGATAGAATCCTATTTACGAGCAAATAAGATGTTTGTGGATTATAGCGAGCCCCAAGTGGAGAGAGTGTACTCATCCTATTTGGAACTCAATCTTGAGGATGTAGAGCCCTGTGTCTCAGGTCCAAAAAGGCCTCACGACCGTGTCCCTTTGAGAGAAATGAAGGTAGACTGGCATGCCTGCCTCAACAATAAAGTTGGATTTAAGGGTTTTGCTGTATCAAAAGAATCTCAGAATAAGGTTGCAGAGTTCACATTCCAAGGGACACCAGCACATCTTAGGCATGGTGATGTTGTTATAGCTGCTATCACCAGTTGTACAAATACTTCAAATCCTAGCGTAATGCTTGGAGCTGCATTGGTTGCAAAGAAAGCATGTGAATTGGGATTGCAGGTGAAGCCATGGATTAAAACAAGTCTTGCCCCAGGTTCTGGTGTTGTAACTAAGTATTTGCAGAGGAGTGGCTTGCAGAAGTATTTGAATGAGCTAGGGTTTAATATAGTTGGGTATGGATGCACCACATGCATTGGAAATTCAGGGGATATTAATGAAGCTGTTGCATCTGCGATTACCGAAAATGATATAGTAGCTGCAGCTGTATTGTCTGGAAATAGGAACTTTGAGGGCCGAGTTCACCCATTAACAAGAGCTAATTATCTTGCTTCTCCTCCTCTTGTTGTTGCCTATGCCCTTGCTGGCACAGTGGACATTGACTTTGACACTGAACCCATTGGGATAGGGAAGGATGGAACAGAGATCTTCTTCAAGGATATTTGGCCATCCAGTGAAGAAATAGCAAATGTTGTACAATCAAGTGTGCTGCCTGATATGTTTAGGGACACATATAATGCAATCACCCAAGGGAATCCCATGTGGAATAATTTATCTGTTCCAACGGGCACTCTTTATGCTTGGGACCCTACATCGACTTATATTCATGAGCCACCTTATTTTAGAGATATGAGCATGTCTCCCCCAGGCTCTCATGGAGTGAAGGATGCTTACTGTTTGCTCAACTTTGGAGACAGTATCACAACTGACCACATCTCTCCAGCTGGCAGCATACATAAGGACAGTCCTGCGGCCAGATACCTTATAGAACGTGGGGTTGATAGACGGGACTTCAACTCCTATGGAAGTCGCCGTGGTAATGATGAGGTGATGGCCCGAGGAACGTTTGCCAATATTCGCATTGTCAACAAATTTTTGAATGGAGAAGTTGGACCTAAAACTATTCATATTCCTTCTGGGGAGAAGTTGTCAGTCTTTGACGTTGCAGAGAAATACAAGAGTGAAGGGCATGATATGATTATCTTGGCTGGTGCTGAGTATGGGAGTGGAAGCTCTCGTGATTGGGCTGCAAAGGGGCCAATGCTACTGGGCGTGAAAGCTGTCATAGCAAAAAGTTTTGAAAGGATTCACCGAAGTAATTTGGTGGGAATGGGTATCATTCCTTTGTGTTTTAAGCCCGGGGAGGATGCTGATTCTCTTGGATTAACTGGTCAAGAACGTTACACCATTGATCTACCAAGCAATGTGAATGAAATACGACCCGGTCAAGATGTCACAGTGGTGACAGACACCGGGAAATCATTTGTATCTACATTGAGATTTGATACTGAGGTTGAACTAGCTTACTTCAACCATGGAGGTATCTTACAATATGTCATCAGAAACTTGATCAATGCTAAACATTGA
>Glyma01g36750.1 sequence type=predicted peptide gene model=Glyma01g36750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATENPFNSILRTLEKPGGAGEFGKYFSLPALNDPRIDRLPYSVRILLESAIRNCDEFQVKSNDIEKIIDWENTSPKLVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFGFLKWGSNAFNNMLVVPPGSGIVHQVNLEYLGRVVFNTNGVLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLLGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLRLTGRSDETVSMIESYLRANKMFVDYSEPQVERVYSSYLELNLEDVEPCVSGPKRPHDRVPLREMKVDWHACLNNKVGFKGFAVSKESQNKVAEFTFQGTPAHLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLQVKPWIKTSLAPGSGVVTKYLQRSGLQKYLNELGFNIVGYGCTTCIGNSGDINEAVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDTEPIGIGKDGTEIFFKDIWPSSEEIANVVQSSVLPDMFRDTYNAITQGNPMWNNLSVPTGTLYAWDPTSTYIHEPPYFRDMSMSPPGSHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAARYLIERGVDRRDFNSYGSRRGNDEVMARGTFANIRIVNKFLNGEVGPKTIHIPSGEKLSVFDVAEKYKSEGHDMIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADSLGLTGQERYTIDLPSNVNEIRPGQDVTVVTDTGKSFVSTLRFDTEVELAYFNHGGILQYVIRNLINAKH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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