SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66055 | AT | Annotation by Michelle Graham. TAIR10: ankyrin repeat protein | chr5:26417425-26419234 REVERSE LENGTH=435 | SoyBase | E_val: 2.00E-51 | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR24199 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24199:SF294 | Panther | JGI | ISS | ||
| UniRef100_I1J8G0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J8G0_SOYBN | SoyBase | E_val: 7.00E-116 | ISS |
| UniRef100_Q05753 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat domain-containing protein, chloroplastic n=2 Tax=Arabidopsis thaliana RepID=AKRP_ARATH | SoyBase | E_val: 9.00E-49 | ISS |
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Glyma01g36654 not represented in the dataset |
Glyma01g36654 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g161800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g36654.2 sequence type=transcript gene model=Glyma01g36654 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTAAATCTTAAATATCCATTATATTCTTTATTTCATTTCTCTCACGGGTATCGTACTAGTTATATTAGTATATAACTTTAGGCTGGGGCTTTGTTGCAGAGTAGAGACATTGTCTGATAACTAGAAACAGGGAAACCAAATACTGGCTTTGAAGTTTGAACGTTAGTATTTGCAGCCACTATGTTCCCTTTCTCTATCCTAAACCTCACTGACTCTTCTCTCCCCTCAAATTCTCCGCAAAACCCAAACCCATACGAGAGAAGTTCAGTCAGAGACCAAAATCACCATTAACGAGAGGCGCAAGAATAATAAGAAGAAGAGAAGAGGGTTGCTTCCCTTAAGAGATGCAAAGAAAATCGAGCTTGAGAAGAAGGGAAATGGAAGAGGGTTGAGTCCCTACAAGGATGTAAATTGAGACAGATCAATCCTCTGGTTCTCAAGAACCCTTCTACGTTTCACGTCAAAGCGAAGCTTCCAGAACCTGACTTCAATGGCGAGCGTGTAGAGCCTAAGGATCCCAGAGGGTTTCTTCACGGGAAGGGTTTGGAGGATGTCATGCAGTTTTTCATAGTTGGAGCTATAACCCTAGTTCTAAGACCACTCATAAAGGGTAAATGGCTTCCTCAGCACACTGTTGCTGCATGTGGAGAACTTTACCTTTTAGATTCTTTGTTGAAGCATAATGCTGTTATCAATTCGGTGGATAAGGATGGTTTGACTGCCCTTCACAAAGCGATTGGCAAAAAGCAGGTCATAACCAATTTTCTCCTAAAAAACTCAGCTAATGCGTTTGTACGGGACAAAGAGGGGGCCACCTTGATGCACTATGCTGTACAAACAGCTTCTACTGAGACAATTGAATTACTCTTATTGTATATTGTAGAGATAAATCTTCAAGACAATGATGGCTGGACACCATTAAATCTTGCTGTTCAAACTCAGACCAAATTTAGTTAGGCTTCTGCTGCTTAAAGGTGCTGATAAGACATTAAGAAACAAGGATGGTTTAACTCCACTTGACCTTTGTCTTTACTCTGGTCAAAGTTTCCAAACGTATGTGCTAATCAAGTTGTTAAAGCAGCCTCAAGGGTGTCTTTGACAAATGGTGTTGTCTCTAGTTCCCAGACATTTGGAAATGTAGCTGTATCGTTCCTGTTGTACCAAGAGCAGAACAAGGGATGTGGTTTCTTTATCCATGTCAGATGTGATTTAGTGTCCTTCTCATTTCAAATATATTTATTTTTAACCCCTTATGGTGATCTATCTTAGATTGGGAAAAGAATTAATTTCTCCATTTTTATCCTTGGTTAAACCTATATGTCTTCTCATGCTCATCAAGTAAGAAGGATTTTAATCAGTAGTGTCCCCATTATTGCTCTCTAATTGATTATTGAGTTGTGGGAACCAAATGTGTAAATCAGTTGCTCAAGATTAACACTTAGTGTTGTGACTTCAGGAGGCAGTCACATTACACCAGAGGTGCAGAGATTAGTTTTCCATTTGTGTTCTTCAAATTTTCAACTGACACCAACAGCAGTCAATTGTCGTTGAATTCTATGGCCAGGGAGTTTGACATGCACTTTTGGAAACCCTACTGGCAGTGTAAATCGACCGAGTAAGAATTTTTGATGGGTACTTTGTAGTATGACCTTTGTACTTGTGTCGCTGTCTATTATAAGGGGATGAAAATAGAAGAAAAAATATTAAACATACTGTATAATGAGGTCGATAGTGTAAAGATGCTTCATACACAAACACAATATTATCCTAAGCACTAGTTTTGTTTGTGTCGATGTGGATGGTAGTAAATAGTAATTATCTGTGCCTAACTATTGTGTAACTACCCAGTTTGTAATTGTTAAAATAATAACAAGAAATGGGTAAGGATCATCAATTCCACAAAAGAAGTAGGTCATGGATGGAAGTTGCATCATATTCATATTTGTTCTGTATGATGCTTACATTTAATTTCATGTTTATGAAATGGCAGGAACATTTCTTTCAAGTTGTCTTTGTTGAAGTCATTCTTCATTCTGTCTGTGAAACTAAATGTAACAGAAACTTGTACCTCTGTCATTGACATTTTTTATGAATTTAATTTAAATGCACTAACACTAATTAAAAAAAAATTATATTATCATCCAATCATATTTCATTATGGCAATGAAAATCTTTACATCGATAGTGTATGAAAATTAAACTGTTTTATTTGTTTACTCACCCTGCTGGCTTTCTTTGTTTCACATTAGATTTTAGAGCTGTTGATGCGTGGGTTGGTTGGGTTTAATTGTTTTAGGAAGCTTTCGGTCATATTCTCTGCCTCTGCAATCATTCGATGATGGTTTTTTGCCAGAAAATCAACGATTGGTTTTGTGGATTGTCATATTGAGTATTCTATTATAGACTTCTATTAATGAGTTAGACTACGTGTACTTAACTACTTATAATAATGAAGCATTACGTTTCTTTAAA
>Glyma01g36654.1 sequence type=CDS gene model=Glyma01g36654 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGACGTAGTGAACCCTTCTACGTTTCACGTCAAAGCGAAGCTTCCAGAACCTGACTTCAATGGCGAGCGTGTAGAGCCTAAGGATCCCAGAGGGTTTCTTCACGGGAAGGGTTTGGAGGATGTCATGCAGTTTTTCATAGTTGGAGCTATAACCCTAGTTCTAAGACCACTCATAAAGGGTAAATGGCTTCCTCAGCACACTGTTGCTGCATGTGGAGAACTTTACCTTTTAGATTCTTTGTTGAAGCATAATGCTGTTATCAATTCGGTGGATAAGGATGGTTTGACTGCCCTTCACAAAGCGATTGGCAAAAAGCAGGTCATAACCAATTTTCTCCTAAAAAACTCAGCTAATGCGTTTGTACGGGACAAAGAGGGGGCCACCTTGATGCACTATGCTGTACAAACAGCTTCTACTGAGACAATTGAATTACTCTTATTGTATATTGTAGAGATAAATCTTCAAGACAATGATGGCTGGACACCATTAAATCTTGCTGTTCAAACTCAGACCAAATTTAGTTAG >Glyma01g36654.2 sequence type=CDS gene model=Glyma01g36654 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGTTTTTCATAGTTGGAGCTATAACCCTAGTTCTAAGACCACTCATAAAGGGTAAATGGCTTCCTCAGCACACTGTTGCTGCATGTGGAGAACTTTACCTTTTAGATTCTTTGTTGAAGCATAATGCTGTTATCAATTCGGTGGATAAGGATGGTTTGACTGCCCTTCACAAAGCGATTGGCAAAAAGCAGGTCATAACCAATTTTCTCCTAAAAAACTCAGCTAATGCGTTTGTACGGGACAAAGAGGGGGCCACCTTGATGCACTATGCTGTACAAACAGCTTCTACTGAGACAATTGAATTACTCTTATTGTATATTGTAGAGATAAATCTTCAAGACAATGATGGCTGGACACCATTAAATCTTGCTGTTCAAACTCAGACCAAATTTAGTTAG
>Glyma01g36654.1 sequence type=predicted peptide gene model=Glyma01g36654 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADVVNPSTFHVKAKLPEPDFNGERVEPKDPRGFLHGKGLEDVMQFFIVGAITLVLRPLIKGKWLPQHTVAACGELYLLDSLLKHNAVINSVDKDGLTALHKAIGKKQVITNFLLKNSANAFVRDKEGATLMHYAVQTASTETIELLLLYIVEINLQDNDGWTPLNLAVQTQTKFS* >Glyma01g36654.2 sequence type=predicted peptide gene model=Glyma01g36654 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQFFIVGAITLVLRPLIKGKWLPQHTVAACGELYLLDSLLKHNAVINSVDKDGLTALHKAIGKKQVITNFLLKNSANAFVRDKEGATLMHYAVQTASTETIELLLLYIVEINLQDNDGWTPLNLAVQTQTKFS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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