SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G17580 | AT | Annotation by Michelle Graham. TAIR10: Polynucleotide adenylyltransferase family protein | chr2:7646507-7650066 FORWARD LENGTH=757 | SoyBase | E_val: 4.00E-159 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0016779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity | SoyBase | N/A | ISS |
| KOG2159 | KOG | tRNA nucleotidyltransferase/poly(A) polymerase | JGI | ISS | |
| PTHR13734 | Panther | TRNA-NUCLEOTIDYLTRANSFERASE 1 | JGI | ISS | |
| PTHR13734:SF12 | Panther | POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN | JGI | ISS | |
| PF01743 | PFAM | Poly A polymerase head domain | JGI | ISS | |
| UniRef100_G7K015 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Poly(A) polymerase n=1 Tax=Medicago truncatula RepID=G7K015_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023373C6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023373C6 related cluster n=1 Tax=unknown RepID=UPI00023373C6 | SoyBase | E_val: 0 | ISS |
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Glyma01g36420 not represented in the dataset |
Glyma01g36420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g08975 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g159600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g36420.3 sequence type=transcript gene model=Glyma01g36420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACACCCTGCAGTTATGAACCATTGTTTCAGCTTTGAGCCAGTGGAATTGCTACTCAATGAGGTTAAAGGATAATTCTGTTGAAATGTAGTGCACTGGTAGAGAAAAAGGACCAGAGAGAAATAGAATAATCAAAATGAGAAAGTTATATTGACATGGATTTGAGTCCTACTTAGTAGGTGGGTGTGTGAGAGATCTACTACTGAATAGAACTCCAAAAGATTTTGATGTTATCACCACAGCAAAGCTGATGGAGGTGAGAGCGCAGTTTCGTGGTTTAGCTCGTGCCGAAGTTGTTGGACGTCGTTTTCCAATATGCTTGGTTCATATAAAAGGTTCTGTAGTTGAGGTAACCAGTTTTGAGACAGTGGCACGAACTTCCAATAGGAAGGAACAATTTTTATACTCTCTGTTGCCCAAATGCAGTAATAAAAAGGACCTTTTTCGCTGCAAAAACTCCTTGCGCAGGGACTTCACAATTAATAGTTTATTTTATGACCCGTTTGCCAATAAAATCTACGATTATACCGATGGAATGGCTGATTTGAGGTCCTTAAAGCTAGAAACTGTTATCCCTGCTCAGATGTCCTTTAAAGAGGATCCTGGGAGAATTTTACGTGGCTTCAGAATTGCAGCTCGTCTTGGTTTATCATTATCAAGGGAGACTGAGGCTGCAATGTGGAAATATTCTTCACTTGTTAAGAGCTTGGACAAGAATAAAATTATGATTGAATTGAACTACATGCTGTCTTATGGCGCTGCTGAACCATCTTTGCATCTACTTTGGAAATTCAAATTACTTGAATTTTTACTTCCTGTGCATGCAGCATATCTTGATGAACAAGCTATTAAAGAAGATGCTCCGGCTTCCAATATGTTGATGAAATTATTCTTCTATCTCGATAATTTGGTTGCATGCGATCGACCTTGTGATTGCACTCTATGGGTTGGATTGCTAGCATTTCACCTGACATTAGTAAATAATCCTCAAGATGCTCTAGTAGTGTGGGCATTTGCTTCTGTTCTATATCATGGGGAGTGGGAAAAAGGTATTAAATTTGCCAAAGAACATGCAAAAATGTATGTTAATTTTGCACCTGAAATAAGGACGTCCAGTATATACAAATCAGATGAAGAAATTGCAAAAGCAGTCACTAAATTGGCATCTTTGGTGATGCACTCCATACCTGCTCTGGTTGAGAGCAACAGTCTTCTTCAATCCATGTCTAGATACCCATCTTTTCCACAATCTGACATGATATTTGTACCCAAGAAAGCAGGGAAACTTGCTTCTGCGATTTTCAAAATGCTGGCCAGTGATGTTGAATTTTACAAGACTGAAAGAAGAAAAAATTCAAAGATAAATTATGGCATGCTTGGGAAGGGACACCTTTCAGAGATTGCATTTGTTTTGGGCAAAATTGTTCTTGAAACTATGAGTAGTGGAACTGTTGGGGATGGGGAGGATTCTGAAGCTGGACAATGCCACCTTAAGACTGAGGGAACCAAAGAAATTGCTCAATCGCAACTTCCAGATCTAGTAAACCATGAAGTGGCGGCAATGAATGGTGAAGGACACCTTTTATCAATACCAAATTCAGAATGTAGGCAAGGAAAAAGCAAGAAACGGAAATTGGTTAAGAATAGATGCATTGCAAAGAAGAAAATGAGCTCCGGGAACCAAGAATTATCTGAGAAATTTGAATACAAGGAAAATAAAGAGGAGCAACAGAAGCTAGTTAAGTTAAGCCAGAAGGTTGATATGTCTACAGAGGATTCTTTGCCCAAAAAGAAAAATGATCACAGAAAACAGTTGATAAGTGATAGGAAGAAAATCACCAGTGCCAATAAAAGTTTTCTACACCAAGCTAAGCATATGAAGACGGATGAAGACAGCACATGCATGCCATCACAATCTACGGTATCCGAGAATCATCAGGTGATAGCTAACAGCAACATAGACGTGAATGCAAAAACAACAAATGAGTCGAACTTAAAGAAGAAGAAAAAGGGTTTATCACTAGTTGAAATGTTTAAAGGGAAATAAAGACAGAAACCACGTGAAAAACTAGCAAAGTAAGTCTCCACTCCCCGTCTCTGAGTGACGGATAACAATTTTTGGTAGCAGCAGATGTTTTATTTCCTAGCATAGTTCAGAGACAAAAAAAAAAAAAAAAGGAAGCACTAGAAACAGAGTTTAGCTTCCTACTTCTCTTTTCCCCTTAAAACTGCATTCAGTTCCTCTAGATTGATCTTATGCTTATATTTTTTAAGGCTCTCTTGGGTCTATATCATTATTGTCTCCATTGGGAGATTTCCTTTCCCTCCACCGTTTATTGTGACAAAATCCGAGGGAAGCTTTTATTGGATATGTGTATGATTGTATGAAATATAACGCAATAGGATGGGAGTCGAACAAAACAATACTATATGGTTGGTTACATGATTCATTATGTAAATTAATTCCAAAGGATGTAAACCTATAACGAGATGGAAGTGGCGCTGGGACGAATGAAAATCACATTGTGTATGTTGTTTGGTGGCTTGAATAGTGAGAAATACTTGCACTTGCTT
>Glyma01g36420.2 sequence type=CDS gene model=Glyma01g36420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCACAACAAACGAGGCGTGCTTACTCGTTTGAAGACTCTCGTCAACTCTCACTCTCAGGGCTTCCACTCCCCTGCGCCCAAACGACCAAAGCAAGATCCATCGTCAACAGAAAATGACTTAGATTACTCTGTTTGCCGAGGCCGCATTGACGTCTCAAAATGGAAGACTTTGGATGCAGAGGAGCTTGGTATAACTAGTTCTATGATTTCATACCCATCTCAGTTTGTCCTGAAACTTCTTCGGAGAAAAGGATTTGAGTCCTACTTAGTAGGTGGGTGTGTGAGAGATCTACTACTGAATAGAACTCCAAAAGATTTTGATGTTATCACCACAGCAAAGCTGATGGAGGTGAGAGCGCAGTTTCGTGGTTTAGCTCGTGCCGAAGTTGTTGGACGTCGTTTTCCAATATGCTTGGTTCATATAAAAGGTTCTGTAGTTGAGGTAACCAGTTTTGAGACAGTGGCACGAACTTCCAATAGGAAGGAACAATTTTTATACTCTCTGTTGCCCAAATGCAGTAATAAAAAGGACCTTTTTCGCTGCAAAAACTCCTTGCGCAGGGACTTCACAATTAATAGTTTATTTTATGACCCGTTTGCCAATAAAATCTACGATTATACCGATGGAATGGCTGATTTGAGGTCCTTAAAGCTAGAAACTGTTATCCCTGCTCAGATGTCCTTTAAAGAGGATCCTGGGAGAATTTTACGTGGCTTCAGAATTGCAGCTCGTCTTGGTTTATCATTATCAAGGGAGACTGAGGCTGCAATGTGGAAATATTCTTCACTTGTTAAGAGCTTGGACAAGAATAAAATTATGATTGAATTGAACTACATGCTGTCTTATGGCGCTGCTGAACCATCTTTGCATCTACTTTGGAAATTCAAATTACTTGAATTTTTACTTCCTGTGCATGCAGCATATCTTGATGAACAAGCTATTAAAGAAGATGCTCCGGCTTCCAATATGTTGATGAAATTATTCTTCTATCTCGATAATTTGGTTGCATGCGATCGACCTTGTGATTGCACTCTATGGGTTGGATTGCTAGCATTTCACCTGACATTAGTAAATAATCCTCAAGATGCTCTAGTAGTGTGGGCATTTGCTTCTGTTCTATATCATGGGGAGTGGGAAAAAGGTATTAAATTTGCCAAAGAACATGCAAAAATGTATGTTAATTTTGCACCTGAAATAAGGACGTCCAGTATATACAAATCAGATGAAGAAATTGCAAAAGCAGTCACTAAATTGGCATCTTTGGTGATGCACTCCATACCTGCTCTGGTTGAGAGCAACAGTCTTCTTCAATCCATGTCTAGATACCCATCTTTTCCACAATCTGACATGATATTTGTACCCAAGAAAGCAGGGAAACTTGCTTCTGCGATTTTCAAAATGCTGGCCAGTGATGTTGAATTTTACAAGACTGAAAGAAGAAAAAATTCAAAGATAAATTATGGCATGCTTGGGAAGGGACACCTTTCAGAGATTGCATTTGTTTTGGGCAAAATTGTTCTTGAAACTATGAGTAGTGGAACTGTTGGGGATGGGGAGGATTCTGAAGCTGGACAATGCCACCTTAAGACTGAGGGAACCAAAGAAATTGCTCAATCGCAACTTCCAGATCTAGTAAACCATGAAGTGGCGGCAATGAATGGTGAAGGACACCTTTTATCAATACCAAATTCAGAATGTAGGCAAGGAAAAAGCAAGAAACGGAAATTGGTTAAGAATAGATGCATTGCAAAGAAGAAAATGAGCTCCGGGAACCAAGAATTATCTGAGAAATTTGAATACAAGGAAAATAAAGAGGAGCAACAGAAGCTAGTTAAGTTAAGCCAGAAGGTTGATATGTCTACAGAGGATTCTTTGCCCAAAAAGAAAAATGATCACAGAAAACAGTTGATAAGTGATAGGAAGAAAATCACCAGTGCCAATAAAAGTTTTCTACACCAAGCTAAGCATATGAAGACGGATGAAGACAGCACATGCATGCCATCACAATCTACGGTATCCGAGAATCATCAGGTGATAGCTAACAGCAACATAGACGTGAATGCAAAAACAACAAATGAGTCGAACTTAAAGAAGAAGAAAAAGGGTTTATCACTAGTTGAAATGTTTAAAGGGAAATAA >Glyma01g36420.3 sequence type=CDS gene model=Glyma01g36420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGTGAGAGCGCAGTTTCGTGGTTTAGCTCGTGCCGAAGTTGTTGGACGTCGTTTTCCAATATGCTTGGTTCATATAAAAGGTTCTGTAGTTGAGGTAACCAGTTTTGAGACAGTGGCACGAACTTCCAATAGGAAGGAACAATTTTTATACTCTCTGTTGCCCAAATGCAGTAATAAAAAGGACCTTTTTCGCTGCAAAAACTCCTTGCGCAGGGACTTCACAATTAATAGTTTATTTTATGACCCGTTTGCCAATAAAATCTACGATTATACCGATGGAATGGCTGATTTGAGGTCCTTAAAGCTAGAAACTGTTATCCCTGCTCAGATGTCCTTTAAAGAGGATCCTGGGAGAATTTTACGTGGCTTCAGAATTGCAGCTCGTCTTGGTTTATCATTATCAAGGGAGACTGAGGCTGCAATGTGGAAATATTCTTCACTTGTTAAGAGCTTGGACAAGAATAAAATTATGATTGAATTGAACTACATGCTGTCTTATGGCGCTGCTGAACCATCTTTGCATCTACTTTGGAAATTCAAATTACTTGAATTTTTACTTCCTGTGCATGCAGCATATCTTGATGAACAAGCTATTAAAGAAGATGCTCCGGCTTCCAATATGTTGATGAAATTATTCTTCTATCTCGATAATTTGGTTGCATGCGATCGACCTTGTGATTGCACTCTATGGGTTGGATTGCTAGCATTTCACCTGACATTAGTAAATAATCCTCAAGATGCTCTAGTAGTGTGGGCATTTGCTTCTGTTCTATATCATGGGGAGTGGGAAAAAGGTATTAAATTTGCCAAAGAACATGCAAAAATGTATGTTAATTTTGCACCTGAAATAAGGACGTCCAGTATATACAAATCAGATGAAGAAATTGCAAAAGCAGTCACTAAATTGGCATCTTTGGTGATGCACTCCATACCTGCTCTGGTTGAGAGCAACAGTCTTCTTCAATCCATGTCTAGATACCCATCTTTTCCACAATCTGACATGATATTTGTACCCAAGAAAGCAGGGAAACTTGCTTCTGCGATTTTCAAAATGCTGGCCAGTGATGTTGAATTTTACAAGACTGAAAGAAGAAAAAATTCAAAGATAAATTATGGCATGCTTGGGAAGGGACACCTTTCAGAGATTGCATTTGTTTTGGGCAAAATTGTTCTTGAAACTATGAGTAGTGGAACTGTTGGGGATGGGGAGGATTCTGAAGCTGGACAATGCCACCTTAAGACTGAGGGAACCAAAGAAATTGCTCAATCGCAACTTCCAGATCTAGTAAACCATGAAGTGGCGGCAATGAATGGTGAAGGACACCTTTTATCAATACCAAATTCAGAATGTAGGCAAGGAAAAAGCAAGAAACGGAAATTGGTTAAGAATAGATGCATTGCAAAGAAGAAAATGAGCTCCGGGAACCAAGAATTATCTGAGAAATTTGAATACAAGGAAAATAAAGAGGAGCAACAGAAGCTAGTTAAGTTAAGCCAGAAGGTTGATATGTCTACAGAGGATTCTTTGCCCAAAAAGAAAAATGATCACAGAAAACAGTTGATAAGTGATAGGAAGAAAATCACCAGTGCCAATAAAAGTTTTCTACACCAAGCTAAGCATATGAAGACGGATGAAGACAGCACATGCATGCCATCACAATCTACGGTATCCGAGAATCATCAGGTGATAGCTAACAGCAACATAGACGTGAATGCAAAAACAACAAATGAGTCGAACTTAAAGAAGAAGAAAAAGGGTTTATCACTAGTTGAAATGTTTAAAGGGAAATAA
>Glyma01g36420.2 sequence type=predicted peptide gene model=Glyma01g36420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNHNKRGVLTRLKTLVNSHSQGFHSPAPKRPKQDPSSTENDLDYSVCRGRIDVSKWKTLDAEELGITSSMISYPSQFVLKLLRRKGFESYLVGGCVRDLLLNRTPKDFDVITTAKLMEVRAQFRGLARAEVVGRRFPICLVHIKGSVVEVTSFETVARTSNRKEQFLYSLLPKCSNKKDLFRCKNSLRRDFTINSLFYDPFANKIYDYTDGMADLRSLKLETVIPAQMSFKEDPGRILRGFRIAARLGLSLSRETEAAMWKYSSLVKSLDKNKIMIELNYMLSYGAAEPSLHLLWKFKLLEFLLPVHAAYLDEQAIKEDAPASNMLMKLFFYLDNLVACDRPCDCTLWVGLLAFHLTLVNNPQDALVVWAFASVLYHGEWEKGIKFAKEHAKMYVNFAPEIRTSSIYKSDEEIAKAVTKLASLVMHSIPALVESNSLLQSMSRYPSFPQSDMIFVPKKAGKLASAIFKMLASDVEFYKTERRKNSKINYGMLGKGHLSEIAFVLGKIVLETMSSGTVGDGEDSEAGQCHLKTEGTKEIAQSQLPDLVNHEVAAMNGEGHLLSIPNSECRQGKSKKRKLVKNRCIAKKKMSSGNQELSEKFEYKENKEEQQKLVKLSQKVDMSTEDSLPKKKNDHRKQLISDRKKITSANKSFLHQAKHMKTDEDSTCMPSQSTVSENHQVIANSNIDVNAKTTNESNLKKKKKGLSLVEMFKGK* >Glyma01g36420.3 sequence type=predicted peptide gene model=Glyma01g36420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEVRAQFRGLARAEVVGRRFPICLVHIKGSVVEVTSFETVARTSNRKEQFLYSLLPKCSNKKDLFRCKNSLRRDFTINSLFYDPFANKIYDYTDGMADLRSLKLETVIPAQMSFKEDPGRILRGFRIAARLGLSLSRETEAAMWKYSSLVKSLDKNKIMIELNYMLSYGAAEPSLHLLWKFKLLEFLLPVHAAYLDEQAIKEDAPASNMLMKLFFYLDNLVACDRPCDCTLWVGLLAFHLTLVNNPQDALVVWAFASVLYHGEWEKGIKFAKEHAKMYVNFAPEIRTSSIYKSDEEIAKAVTKLASLVMHSIPALVESNSLLQSMSRYPSFPQSDMIFVPKKAGKLASAIFKMLASDVEFYKTERRKNSKINYGMLGKGHLSEIAFVLGKIVLETMSSGTVGDGEDSEAGQCHLKTEGTKEIAQSQLPDLVNHEVAAMNGEGHLLSIPNSECRQGKSKKRKLVKNRCIAKKKMSSGNQELSEKFEYKENKEEQQKLVKLSQKVDMSTEDSLPKKKNDHRKQLISDRKKITSANKSFLHQAKHMKTDEDSTCMPSQSTVSENHQVIANSNIDVNAKTTNESNLKKKKKGLSLVEMFKGK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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