SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66005 | AT | Annotation by Michelle Graham. TAIR10: Expressed protein | chr5:26397864-26399123 REVERSE LENGTH=192 | SoyBase | E_val: 7.00E-92 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0019204 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide phosphatase activity | SoyBase | N/A | ISS |
| PTHR20953 | Panther | KINASE-RELATED | JGI | ISS | |
| PF03266 | PFAM | Protein of unknown function, DUF265 | JGI | ISS | |
| UniRef100_C6T3X1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3X1_SOYBN | SoyBase | E_val: 7.00E-136 | ISS |
| UniRef100_G7K184 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleoside-triphosphatase, putative n=1 Tax=Medicago truncatula RepID=G7K184_MEDTR | SoyBase | E_val: 2.00E-113 | ISS |
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Glyma01g36320 not represented in the dataset |
Glyma01g36320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g09111 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g158800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g36320.2 sequence type=transcript gene model=Glyma01g36320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATGAAGTGATATATTAAGCTTGTGTTGTGTCGCATTACATTGACATTGTATTTTTAATTAGAAAAGGCGCAGAAACAGAAACAGAAAGAATGGCTGGTCCCGGCAAATGCTTCCTCGTGACGGGTCCTCCGGGTGTGGGAAAAACCACTCTTATTATGAAAGTATTCGAGTCCCTCAAAGTCAATCCATCCCTCAAGCTTCAGGGCTTCTACACTCGGGAAATTAGGCGCGCCGGCCAGAGGGTTGGTTTTGAAGTGGTCACACTCGACGGTCGCACTGCCCCACTTGCTTCCATCGACATTTCAACCCCCGAGTCTCTCAGATGGCCTAATGTTGGCAAGTATAAAGTTGATGTTGCTTCCTTCGAGTCACTAGCACTTCCCGAGTTACAGGTTAAAGAAGACACTGATCTCTTCATCATTGACGAAGTTGGTAAGATGGAGTTGTTCAGTTCCTCATTCTTCCCTGCAGTTCTAAGAGTTTTGGAGTCAAATATCCCAGTTTTGGCTTCCATTCCAGTTCCAAAATTCGGCAGAGACATACCTGAAGGACTAAATCTGCCACAAGACCTGAGCTCAAAGATCTGTTGAAGAGATGTTTTGAGGATTTTGGAGCATTTCACTATCTAATTGCTTTGCTGAATTTGTGAATGACTAATGTTCTCGAATTCTGCAGTTGCAAGGTTGCGGAATCATGCAGGGGCAACTTGTTTTACATTGAGCGTTAGTAACAGAGATGCTGTTAGAGAACAGATACGCTCACAATTGGAAGATATGCTGACAAAACACTAGTCATTGCAAGTTTGTGGTCTGAATTCATACCGTGTAATGTAGAATAAATTATGAATTTATGATGGGCTAATACTATTTAGTGAGAGAAAAAAAAGTGCAAATCTTAATCGAGCCTTAAATAAGTTGATAAGCTAGTTGAGCTTTGAATACCATTAGTAGTATACATGACTTATCTGCATGATAGTCCTTTTGTAATGACTTATCTGTATGTCTGTATTATGGACAATATCTTCTGCAGGAAACTGAAAATCTTAATCCATGTAATACATGATATGATTATACTTATCACATTTAAACACAGTATCAAAATATG
>Glyma01g36320.1 sequence type=CDS gene model=Glyma01g36320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGTCCCGGCAAATGCTTCCTCGTGACGGGTCCTCCGGGTGTGGGAAAAACCACTCTTATTATGAAAGTATTCGAGTCCCTCAAAGTCAATCCATCCCTCAAGCTTCAGGGCTTCTACACTCGGGAAATTAGGCGCGCCGGCCAGAGGGTTGGTTTTGAAGTGGTCACACTCGACGGTCGCACTGCCCCACTTGCTTCCATCGACATTTCAACCCCCGAGTCTCTCAGATGGCCTAATGTTGGCAAGTATAAAGTTGATGTTGCTTCCTTCGAGTCACTAGCACTTCCCGAGTTACAGGTTAAAGAAGACACTGATCTCTTCATCATTGACGAAGTTGGTAAGATGGAGTTGTTCAGTTCCTCATTCTTCCCTGCAGTTCTAAGAGTTTTGGAGTCAAATATCCCAGTTTTGGCTTCCATTCCAGTTCCAAAATTCGGCAGAGACATACCTGAAGTTGCAAGGTTGCGGAATCATGCAGGGGCAACTTGTTTTACATTGAGCGTTAGTAACAGAGATGCTGTTAGAGAACAGATACGCTCACAATTGGAAGATATGCTGACAAAACACTAG >Glyma01g36320.2 sequence type=CDS gene model=Glyma01g36320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGTCCCGGCAAATGCTTCCTCGTGACGGGTCCTCCGGGTGTGGGAAAAACCACTCTTATTATGAAAGTATTCGAGTCCCTCAAAGTCAATCCATCCCTCAAGCTTCAGGGCTTCTACACTCGGGAAATTAGGCGCGCCGGCCAGAGGGTTGGTTTTGAAGTGGTCACACTCGACGGTCGCACTGCCCCACTTGCTTCCATCGACATTTCAACCCCCGAGTCTCTCAGATGGCCTAATGTTGGCAAGTATAAAGTTGATGTTGCTTCCTTCGAGTCACTAGCACTTCCCGAGTTACAGGTTAAAGAAGACACTGATCTCTTCATCATTGACGAAGTTGGTAAGATGGAGTTGTTCAGTTCCTCATTCTTCCCTGCAGTTCTAAGAGTTTTGGAGTCAAATATCCCAGTTTTGGCTTCCATTCCAGTTCCAAAATTCGGCAGAGACATACCTGAAGGACTAAATCTGCCACAAGACCTGAGCTCAAAGATCTGTTGA
>Glyma01g36320.1 sequence type=predicted peptide gene model=Glyma01g36320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGPGKCFLVTGPPGVGKTTLIMKVFESLKVNPSLKLQGFYTREIRRAGQRVGFEVVTLDGRTAPLASIDISTPESLRWPNVGKYKVDVASFESLALPELQVKEDTDLFIIDEVGKMELFSSSFFPAVLRVLESNIPVLASIPVPKFGRDIPEVARLRNHAGATCFTLSVSNRDAVREQIRSQLEDMLTKH* >Glyma01g36320.2 sequence type=predicted peptide gene model=Glyma01g36320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGPGKCFLVTGPPGVGKTTLIMKVFESLKVNPSLKLQGFYTREIRRAGQRVGFEVVTLDGRTAPLASIDISTPESLRWPNVGKYKVDVASFESLALPELQVKEDTDLFIIDEVGKMELFSSSFFPAVLRVLESNIPVLASIPVPKFGRDIPEGLNLPQDLSSKIC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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