Glyma01g36011 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g36011

Feature Type:	gene_model
Chromosome:	Gm01
Start:	48469241
stop:	48475758
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g36011

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51520	AT	Annotation by Michelle Graham. TAIR10: diacylglycerol acyltransferase family \| chr3:19110739-19112518 FORWARD LENGTH=314	SoyBase	E_val: 4.00E-164	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diacylglycerol O-acyltransferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
KOG0831	KOG	Acyl-CoA:diacylglycerol acyltransferase (DGAT)	JGI		ISS
PTHR12317	Panther	DIACYLGLYCEROL O-ACYLTRANSFERASE	JGI		ISS
PF03982	PFAM	Diacylglycerol acyltransferase	JGI		ISS
UniRef100_G7K2N1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Diacylglycerol O-acyltransferase n=1 Tax=Medicago truncatula RepID=G7K2N1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0000F05039	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0000F05039 related cluster n=1 Tax=unknown RepID=UPI0000F05039	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g36011

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g36011 not represented in the dataset	Glyma01g36011 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g36011

Paralog	Evidence	Comments
Glyma11g09411	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g36011 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g156000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g36011

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g36011

Limit To All Plant Sequences

>Glyma01g36011.1   sequence type=CDS   gene model=Glyma01g36011   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCGGAACCGGTGAGTGACGGCGGAGCCGCGGCGGAGAAATTGATCAGCGGGAGAGAAGAATTTGGTGATTCGTCCAACTTGTTCAGCGCGATTCTAGCAATGGTGCTGTGGCTGGGAGCTATTCATTTCAACATCGCCCTGATCCTCCTCGCCGTGTTCTTCCTTCCTCTCTCCAAATCGCTCTTGGTTTTCGGTTTTCTCTTTGGGTTTATGGTGCTTCCTATCAACGAGAAGAGCAGATTTGGCCGAAGATTGTCGAGGTTCATATGCAAGCACGCTTGCAATTACTTTCCGATCACGCTTCACGTAGAGGATATGAAAGCCTTTGATCCTAACCGTGCTTATGTTTTTGGGTATGAACCACATTCAGTTTTGCCAATTGGCATTGTTGCATTGGCTGACCACACAGGTTTCATGCCTCTTCCAAAAGTTAAAGTTCTTGCTAGCAGCACGGTGTTCTACACACCATTTTTGAGACACTTATGGACATGGTTGGGTCTTACACCAGCAACAAAGAAAAATTTTATCTCCCTGTTAGCATCTGGCCATAGTTGCATTTTAATACCTGGTGGAGTGCAAGAAGCATTTCACATGCAGCATGGCACTGAGATTGCTTTCCTTAAGGCAAGAAGAGGATTTGTCCGCGTAGCAATGGTGAAAGGCAAACCTTTGGTTCCAGTCTTCTGCTTTGGTCAGTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTATTTCTGAAATTTGCAAGGGCTATCAAGTTCACCCCAATATGTTTTTGGGGAATTTTTGGGTCTCCATTACCGTTCAGACATCCAATGCATGTGGTTGTGGGTAGACCAATTGAGGTTGACAAAAACCGAGAACCAACCACCGAGGAGGTTGCCAAGATACATGGTCTGTTTGTGGAAGCACTTCAAGATCTCTTTGAAAGGCACAAAGCTCGGGCTGGCTATCCAAACCTTGAGTTAAGAATAGTTTGA

Predicted protein sequences of Glyma01g36011

Limit To All Plant Sequences

>Glyma01g36011.1   sequence type=predicted peptide   gene model=Glyma01g36011   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAEPVSDGGAAAEKLISGREEFGDSSNLFSAILAMVLWLGAIHFNIALILLAVFFLPLSKSLLVFGFLFGFMVLPINEKSRFGRRLSRFICKHACNYFPITLHVEDMKAFDPNRAYVFGYEPHSVLPIGIVALADHTGFMPLPKVKVLASSTVFYTPFLRHLWTWLGLTPATKKNFISLLASGHSCILIPGGVQEAFHMQHGTEIAFLKARRGFVRVAMVKGKPLVPVFCFGQSNVYKWWKPGGKLFLKFARAIKFTPICFWGIFGSPLPFRHPMHVVVGRPIEVDKNREPTTEEVAKIHGLFVEALQDLFERHKARAGYPNLELRIV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain