Report for Sequence Feature Glyma01g35910
Feature Type: gene_model
Chromosome: Gm01
Start: 48361828
stop: 48364787
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g35910
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G19170 AT
Annotation by Michelle Graham. TAIR10: nine-cis-epoxycarotenoid dioxygenase 4 | chr4:10481835-10483622 FORWARD LENGTH=595
SoyBase E_val: 0 ISS
GO:0009718 GO-bp
Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0010287 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG1285
KOG
Beta, beta-carotene 15,15'-dioxygenase and related enzymes
JGI ISS
PTHR10543 Panther
CARTENOID OXYGENASE
JGI ISS
PTHR10543:SF1 Panther
9-CIS-EPOXYCAROTENOID DIOXYGENASE-RELATED
JGI ISS
PF03055 PFAM
Retinal pigment epithelial membrane protein
JGI ISS
UniRef100_G7K3Y7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L14 n=1 Tax=Medicago truncatula RepID=G7K3Y7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1J888 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J888_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g35910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma01g35910 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g154900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g35910
Coding sequences of Glyma01g35910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g35910.2 sequence type=CDS gene model=Glyma01g35910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTCCCAAAACCAATCTTAGTCACAACACCACCGCCGGCAACTTCTGCACCCTCTCCACTGCTCAACGCAGTTTCACCCCTCAAAACAGAAGAAAAACCCCAAACACAAACCCTAAAAACCCCCACCACCACCACTCAAAAAGCTATAACCAAACCAAGCCCATCATCATCCACCACCAAAACGACGCCGCAGCAGCGCGTGGAGCTAAAGAGAAAAACAAACTCATGGGTCCCCGCACTAATGCTAAACGCATTCGACGACATCATCAACAACTTCATAGACCCTCCACTCAAACCCTCCATAGACCCTCGCCACGTGTTGTCACAAAACTTCGCCCCCGTCCACGAGCTTCCTCCGACGGAGTGTGAAGTCATTGAAGGCTCTCTCCCACCGTCCCTCGACGGCGCCTACATCCGAAACGGCCCCAACCCCCAGTTCCTCCCGCGTGGGCCCTACCACCTCTTCGACGGCGACGGCATGCTCCACGCGCTTCGCATCTCCCATGGCAAAAAACCCACGCTCTGCAGCCGCTACGTTAAAACCTACAAATACACCATGGAAAACGACGCCGGTTTCCCTCTCATCCCCAACGTGTTCTCCGGCTTCAACTCCCTCGTGGCCTCCGCGGCACGTGGCTCCCTCTCCGCTGCACGTTTCTTAACGGGGCAGTTTAACCCCGCTAACGGCATTGGCCTGGCCAACACCAGCTTAGCCTTCTTCGGGAATCGTCTCTTCGCGCTTGGCGAATCCGACCTCCCTTACGTCGTTAACGTAACCCCTGACGGCGACATCGAAACCCTCGGCCGTCACGACTTTGACGGAAAACTCACGTTCAGCATGACGGCGCACCCTAAGATAGACCCCGACACAGCGGAGTGCTTCGCCTTCCGTTACGGCCCCGTGCCACCGTTCCTCACCTACTTCCGTTTCGACGGTAACGGCAAAAAACACGAGGACGTTCCTATTTTCTCCATGCTAACACCTTCGTTCCTCCACGATTTCGCCATTACGAAGAAATACGCGATCTTCTGTGATATTCAGCTCGGATTGAACCCTCTTGACATGATCTCCGGTGGCTCCCCCGTCGGCTCCGTCGCCTCCAAGGTCCCAAGGATCGGAATCCTCCCTCGTGATGCTAAGGATGAGTCGATGATGAAGTGGTTTGAGGTGCCGGGGTTCAACATCATTCACGCGATAAACGCGTGGGAGGAGGACGAGGGAAGAACGGTGGTGCTGGTGGCGCCGAATATTCTTTCGATGGAGCACGCGCTGGAGAGAATGGAGCTAGTTCACGCGATGGTGGAGAAGGTTCGGATCGAGCTGGACACAGGGATAATCACGCGGCAACCGGTGTCGGCGCGGAATCTCGATTTCGCAGTTATAAACCCTGCGTTCGTGGGGAAGAAGAACAGGTTCGTTTACGCGGCGGTGGGGGACCCAATGCCGAAGATCTCGGGGGTGGTGAAACTCGACGTGTCGAAGGGGGAGGAGCGGAGGGACTGCACGGTGGGGTGCAGGATGTACGGCGAGGGTTGCTACGGCGGAGAACCGTTCTTCGTGGCGAGGGAAGAAGGGGGCGAGGAAGATGATGGGTACTTGGTGAGTTACGTGCACGATGAGAGGAAGGGGGAGTCGAGGTTTTTGGTGATGGACGCGAAGTCGCCGGAGCTAGATGTTGTGGCGGCGGTGAGGCTTCCGCGGCGGGTGCCGTACGGGTTCCATGGGCTGTTTGTGAAGGAGAGTGAGCTGAGGAAAGTGTCGTTGTCGTGA
Predicted protein sequences of Glyma01g35910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g35910.2 sequence type=predicted peptide gene model=Glyma01g35910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVPKPILVTTPPPATSAPSPLLNAVSPLKTEEKPQTQTLKTPTTTTQKAITKPSPSSSTTKTTPQQRVELKRKTNSWVPALMLNAFDDIINNFIDPPLKPSIDPRHVLSQNFAPVHELPPTECEVIEGSLPPSLDGAYIRNGPNPQFLPRGPYHLFDGDGMLHALRISHGKKPTLCSRYVKTYKYTMENDAGFPLIPNVFSGFNSLVASAARGSLSAARFLTGQFNPANGIGLANTSLAFFGNRLFALGESDLPYVVNVTPDGDIETLGRHDFDGKLTFSMTAHPKIDPDTAECFAFRYGPVPPFLTYFRFDGNGKKHEDVPIFSMLTPSFLHDFAITKKYAIFCDIQLGLNPLDMISGGSPVGSVASKVPRIGILPRDAKDESMMKWFEVPGFNIIHAINAWEEDEGRTVVLVAPNILSMEHALERMELVHAMVEKVRIELDTGIITRQPVSARNLDFAVINPAFVGKKNRFVYAAVGDPMPKISGVVKLDVSKGEERRDCTVGCRMYGEGCYGGEPFFVAREEGGEEDDGYLVSYVHDERKGESRFLVMDAKSPELDVVAAVRLPRRVPYGFHGLFVKESELRKVSLS*