SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31780 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | chr1:11391341-11394610 FORWARD LENGTH=680 | SoyBase | E_val: 0 | ISS |
| GO:0006891 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3758 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR21506 | Panther | COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6 | JGI | ISS | |
| PF06419 | PFAM | Conserved oligomeric complex COG6 | JGI | ISS | |
| UniRef100_G7K401 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Conserved oligomeric Golgi complex subunit n=1 Tax=Medicago truncatula RepID=G7K401_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J885 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J885_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g35820 not represented in the dataset |
Glyma01g35820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g09550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g154500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g35820.1 sequence type=CDS gene model=Glyma01g35820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAACCTCGGTGGCGGATCTAGCTCCGGGTCTGTCACGGAAGCTGAAGAAGGTTCAAGAATCTCGGATCGACACGCCCTATCTCTTGTCTTCGCTCAACACGCTCTCTTCCTTCTACGACGACAACACTCCTCAGGCGCGTCGCAACCTCCGATCCACCATCGAGAAGCGCGCCCTCTCCATCAACTGCGAATTCCTCGACGCTTCCCACGCCGCGCAGCTGGCCTTGGATAGCGTGGAGAACGAGGTCGATTCGCTCGCCGCGTGCTGCGACAGTAAACATATTTGCTCAAAGATTTCCTTGGTAGGGCTTTTAAAATGCAGGCGAAGAAGAATAATGCAGTTAGGAGTGCTAGCACTGCTGACATTATCGGTACCACAAAGAGGCTCAAACAAGAGCTTGAAACTACTACACAAAGAGATTGTGGCATGTTTCTTACGTGATTATCAGCTCTCCCCTGAAGAGATAAATGCACTTAGAGAAGAAGAGCTGAATGAAAACTTTTTCAAGGCATTGTCTCATGTCCAAGAGATTCATGCCAATTGCAAAGTGTTGCTTAGGACACATCATCAGCGTGCTGGTTTAGAGCTGATGGATATGATGGCTGTATTCATCTACTTCAGCCTCATATGGCTAGAGCATGCATTGTATTTTATCTGTGAGTTACTACAAAAATTGAGTGACACTGACAATCCGGAAGTTAGTGAGCTTCTGAAAACTGCTGTGCGCTACCTCAGGGAAAGATCTGTCCTTTTCAAATATTGTGCAGAAGAGGTAGCCAATATGAGACACAACGCACTATTTAGAAGATTTATAAGTGCTCTTACACGTGGAGGACCTGGTGGATTGCCTCGACCAATTGAAGTGCATGCTCATGACCCACTACGATATGTCGGTGATATGCTAGGCTGGTTGCATCAGGCCTTGGCATCTGAACGTGAACTTGTAGCTGTATTACTTGATCCAGATACAATTACCGATTCTGGTCCAAAGCAATTCTCCAATAACTCTGAGGATGGCTCTGGGAAGACAGAATCTGACTTGATGTTTGTTCTTGATAGAATTTTTGAAGGATCTCAACCAAGTCTTATAGTATCCTACAAACTCAGTAGTACACTTGAATTTTACTGCTACACTATCTCAGATTTACTTGGGCGAGAAACTGCACTTTGTAATACACTATGGGCACTGAAAGATGCTGCTCAGAATACATTTTTTGATATTTTGAAAGGCCGAGGGGAAAAGCTTTTGCGGTATCCCCCACTTGTTGCTGTTGATCTTTCCCCGCCACCAGCAGTGACGGAAGGGGTATCTGTACTTCTTGAAATTATCGACAACTACAACAGCATGATGGTTCCTGCTTCTGGCCAAAAACCTGCTTTTGGTCCAGTTATATCTGCTATACTGGATCCAATAGTTCAGATGTGTGAACAAGCAGCGGAGGCACACAAGTCAAAGGGAGCTGGCCACTCATCAAGAAGGAGTGGGATGAGTTTTGACTGTGGTCAACTTACTAAATCATCAGTTGATGCAATTTTGTCAAATAGTAGCTCTGTGTCTTCCTCACTGAGTTCCATTATTATAACAGGAGAGGATGACTGTTAA
>Glyma01g35820.1 sequence type=predicted peptide gene model=Glyma01g35820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTSVADLAPGLSRKLKKVQESRIDTPYLLSSLNTLSSFYDDNTPQARRNLRSTIEKRALSINCEFLDASHAAQLALDSVENEVDSLAACCDSKHICSKISLVGLLKCRRRRIMQLGVLALLTLSVPQRGSNKSLKLLHKEIVACFLRDYQLSPEEINALREEELNENFFKALSHVQEIHANCKVLLRTHHQRAGLELMDMMAVFIYFSLIWLEHALYFICELLQKLSDTDNPEVSELLKTAVRYLRERSVLFKYCAEEVANMRHNALFRRFISALTRGGPGGLPRPIEVHAHDPLRYVGDMLGWLHQALASERELVAVLLDPDTITDSGPKQFSNNSEDGSGKTESDLMFVLDRIFEGSQPSLIVSYKLSSTLEFYCYTISDLLGRETALCNTLWALKDAAQNTFFDILKGRGEKLLRYPPLVAVDLSPPPAVTEGVSVLLEIIDNYNSMMVPASGQKPAFGPVISAILDPIVQMCEQAAEAHKSKGAGHSSRRSGMSFDCGQLTKSSVDAILSNSSSVSSSLSSIIITGEDDC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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