SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G35605 | AT | Annotation by Michelle Graham. TAIR10: SWIB/MDM2 domain superfamily protein | chr2:14946161-14947027 FORWARD LENGTH=109 | SoyBase | E_val: 7.00E-38 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR13844 | Panther | BRG-1 ASSOCIATED FACTOR 60 (BAF60) | JGI | ISS | |
| PF02201 | PFAM | SWIB/MDM2 domain | JGI | ISS | |
| UniRef100_I1J881 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J881_SOYBN | SoyBase | E_val: 4.00E-88 | ISS |
| UniRef100_Q93W30 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q93W30_ARATH | SoyBase | E_val: 3.00E-35 | ISS |
|
Glyma01g35780 not represented in the dataset |
Glyma01g35780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g09580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g154200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g35780.2 sequence type=transcript gene model=Glyma01g35780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAATAATAGAAAAGTACTGTGGGATCATCGAGGAGCGAGGGAACCCAAGGCCAAATGCCTCAACTCAACCCTCTCACTCTCACGCTCTCATACTCATTCGCTCACTCGCTCACCCTCTAGGGTTTTTTGGAATCAGAAAACGAAATAGGGTTTTAGCGGAACGATCATGGCACCAGCTAGGGTTTTCGGGGCAATCGCCGGCAGAGCGTTCATGGCGGCGGCGGCGAAGAGCGCGGCGAAGAAGAAACCCGCTCCGTCCAGCGGAGCCGCTGCGAAAGCCGCTGTGAAGAAGACGGCCGCGCCCAGGACCACCAACTCCGGCATACAGAAGGTGGTTCCGGTGTCTTCCGAGCTCGGAGACTTCCTCGGCGCTCCTCAAGTGTCCCGAACCGAAGCCGTCAAGAAAGTCTGGGCCTACATCAAGCTGCAGAATCTTCAGCAAATAAGAAGGAGATCTTTTGTGATGAGAAGCTGAAGACCATTTTTGAGGGGAAAGATAAGGTTGGGTTCACAGAGATTGCTAAATTGCTGTCTAACCATTTTGTGAAATCAGTCTGATATTTTGCTTTGATGGTACTGTTACTGATGGTAACTGGTTCTAGTACATTAAATAGGTCATTTTGTCTTCAAGTACATGGTCTGTGACCAACCGCTAAGAAACATGGAAATTTGTTGTATCAGACTTAGTTTTTTTATTTTTATTTTTTTAAGGTGGTGTTATTTGTTCCACTGTCTTGTTTCACATTGTTGGGGTTTTAGTATATATGCATGATATTTCCAAGCCCTATGCGTTCATCACCATAGTTATTCAGCTATTCGTGATTTGACATTACACAATTTGATACG
>Glyma01g35780.1 sequence type=CDS gene model=Glyma01g35780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACCAGCTAGGGTTTTCGGGGCAATCGCCGGCAGAGCGTTCATGGCGGCGGCGGCGAAGAGCGCGGCGAAGAAGAAACCCGCTCCGTCCAGCGGAGCCGCTGCGAAAGCCGCTGTGAAGAAGACGGCCGCGCCCAGGACCACCAACTCCGGCATACAGAAGGTGGTTCCGGTGTCTTCCGAGCTCGGAGACTTCCTCGGCGCTCCTCAAGTGTCCCGAACCGAAGCCGTCAAGAAAGTCTGGGCCTACATCAAGCTGCAGAATCTTCAGAATCCAGCAAATAAGAAGGAGATCTTTTGTGATGAGAAGCTGAAGACCATTTTTGAGGGGAAAGATAAGGTTGGGTTCACAGAGATTGCTAAATTGCTGTCTAACCATTTTGTGAAATCAGTCTGA >Glyma01g35780.2 sequence type=CDS gene model=Glyma01g35780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACCAGCTAGGGTTTTCGGGGCAATCGCCGGCAGAGCGTTCATGGCGGCGGCGGCGAAGAGCGCGGCGAAGAAGAAACCCGCTCCGTCCAGCGGAGCCGCTGCGAAAGCCGCTGTGAAGAAGACGGCCGCGCCCAGGACCACCAACTCCGGCATACAGAAGGTGGTTCCGGTGTCTTCCGAGCTCGGAGACTTCCTCGGCGCTCCTCAAGTGTCCCGAACCGAAGCCGTCAAGAAAGTCTGGGCCTACATCAAGCTGCAGAATCTTCAGCAAATAAGAAGGAGATCTTTTGTGATGAGAAGCTGA
>Glyma01g35780.1 sequence type=predicted peptide gene model=Glyma01g35780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPARVFGAIAGRAFMAAAAKSAAKKKPAPSSGAAAKAAVKKTAAPRTTNSGIQKVVPVSSELGDFLGAPQVSRTEAVKKVWAYIKLQNLQNPANKKEIFCDEKLKTIFEGKDKVGFTEIAKLLSNHFVKSV* >Glyma01g35780.2 sequence type=predicted peptide gene model=Glyma01g35780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPARVFGAIAGRAFMAAAAKSAAKKKPAPSSGAAAKAAVKKTAAPRTTNSGIQKVVPVSSELGDFLGAPQVSRTEAVKKVWAYIKLQNLQQIRRRSFVMRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
