Glyma01g35660 - SoyBase

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Report for Sequence Feature Glyma01g35660

Feature Type:	gene_model
Chromosome:	Gm01
Start:	48174705
stop:	48177832
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g35660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G19230	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 707, subfamily A, polypeptide 1 \| chr4:10521524-10523517 FORWARD LENGTH=467	SoyBase	E_val: 0	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0009687	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid metabolic process	SoyBase	N/A	ISS
GO:0048838	GO-bp	Annotation by Michelle Graham. GO Biological Process: release of seed from dormancy	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0010295	GO-mf	Annotation by Michelle Graham. GO Molecular Function: (+)-abscisic acid 8'-hydroxylase activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0157	KOG	Cytochrome P450 CYP4/CYP19/CYP26 subfamilies	JGI		ISS
PTHR24286	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24286:SF63	Panther		JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_B0L642	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Abscisic acid 8'-hydroxylase n=1 Tax=Glycine max RepID=B0L642_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1J871	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J871_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g35660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g35660

Paralog	Evidence	Comments
Glyma09g35250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g35660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g153300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g35660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g35660

Limit To All Plant Sequences

>Glyma01g35660.2   sequence type=transcript   gene model=Glyma01g35660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATTGACAGAATTAAATTAGACTAAAAACTTGAATGAGCTGGAGGGAGATTCCGTGTGTGGAAATCGAGCTGTAATTGAAAGCCTCCCTTTCTTTTTCCCTCCTTCCCACCCTCTTCCTGCTTTATTTGCTTCCACTCTAGTAATTTAAGAGCCTATAAATACCTCAAATGTTCAACTTCTTTTGTCACACACCCTCTTCTTCTTCTTATTCTTTCTTTTTCTCCTTCTAATTCTTTGTTACCCTTCACCTATTACAAGCCACTCACACTAACACAAAAACATGGAACTAAGCACCATGTTTTGCTTGTGTGCTTCGTTTCTCTTCATTGTTCTCTTCAGGGCACTCATCAAACCTTATTATGTCTCCAAACGCCGTGACTTGCCACTCCCACCTGGCTCCATGGGTTGGCCTTACATAGGAGAAACCTTTCAAATGTATTCTCAAGATCCAAATGTCTTCTTTGCCTCAAAAATAAAAAGGTTCAATTCTTTCACTTTCTTCAACGACTTCATGATGGACAAACAAACAAATTTCACTTACACACATCATTTTTTTTTTTGTTATCTAGGTTTGGCTCTATGTTCAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGATTTCCAGCCCCGAGGCTGCAAAGTTTGTGCTCAACAAAGCTCAACTCTTCAAGCCAACATTCCCAGCAAGCAAAGAGAGGATGTTGGGAAAACAAGCTATCTTCTTTCACCAAGGAGAGTACCATGCTAACTTGAGAAGGCTTGTTCTTCGCACCTTCATGCCCGAAGCCATAAAAAACATCGTACCTGACATTGAATCCATTGCCCAAGATTGCTTAAAGTCTTGGGAAGGCCGTCTGATCACCACTTTCCTTGAAATGAAAACGTTCACCTTCAACGTTGCTCTGCTTTCAATTTTCGGGAAAGAAGAGATTCTGTACAGAGATGCTCTGAAACGGTGCTACTACACTCTGGAGCAAGGGTACAACTCAATGCCCATAAACGTTCCAGGGACACTGTTCCACAAGGCGATGAAGGCAAGGAAGGAACTTGCACAAATCGTGGCCCAAATAATCTCGAGCAGAAGGCAGAGGAAGCAGGATTTTCACAAGGACCTTTTGGGTTCATTCATGGATGAGAAATCAGGGCTCACCGATGAGCAGATAGCGGATAATGTAATTGGCGTCATATTCGCAGCTCGTGACACCACCGCCAGTGTGCTGACGTGGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAGGGTCTAAATTGGGAAGATGCAAAAAAGATGCCAATAACTTCAAGGGTCATTCAGGAGACTCTAAGAGTTGCTTCAATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTTGAATACCAAGGGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATACACCACAGTCCAGACAACTTCAAGGAGCCAGAAAAATTTGATCCCTCAAGATTTGAGGCTGCTCCAAAGCCCAACACTTTTATGCCATTTGGCAGTGGGATCCACATGTGTCCAGGGAATGAATTAGCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCTTCCCCAAAACGGCTTACCCATCACATTATTTCCCAAGAGCAAGTAGATAATCAATCACACATCCAATACAACCCTGGCTTCATAGTAGCTTTCTAAATATGGAAAGAATTGCTTCATAGCTCTCAAAATTGGTTTCCACAGATAATGATAAAGACACAGACCATATTGCAATTGGATAACCAAACAAAGGGAGATCAACTTTTCCCTTCTTTTTTGTCCAAGAGAAACCTAAAGGGGTAATCTTGACAAATAGCATACAAACAGGAATGTCAAGTGTATATAGAGGAGGTTTCACAGCCTGAGCAGATAGTATTAAGTTCTTTTCATTTTCTTATTTTTTTTATCTTTCAAATATGAGGAAAAGTCCTCATAAGATTGTATTGATGCATTCAACTAATTAGTTCTGTATCCATAAGAATGCCGCAAGGCCAAAATAAAGTGAAACATTGGTTCTGGGATGAGTTTCAAATGCCACAAAACTTTC

Coding sequences of Glyma01g35660

Limit To All Plant Sequences

>Glyma01g35660.1   sequence type=CDS   gene model=Glyma01g35660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTAAGCACCATGTTTTGCTTGTGTGCTTCGTTTCTCTTCATTGTTCTCTTCAGGGCACTCATCAAACCTTATTATGTCTCCAAACGCCGTGACTTGCCACTCCCACCTGGCTCCATGGGTTGGCCTTACATAGGAGAAACCTTTCAAATGTATTCTCAAGATCCAAATGTCTTCTTTGCCTCAAAAATAAAAAGGTTTGGCTCTATGTTCAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGATTTCCAGCCCCGAGGCTGCAAAGTTTGTGCTCAACAAAGCTCAACTCTTCAAGCCAACATTCCCAGCAAGCAAAGAGAGGATGTTGGGAAAACAAGCTATCTTCTTTCACCAAGGAGAGTACCATGCTAACTTGAGAAGGCTTGTTCTTCGCACCTTCATGCCCGAAGCCATAAAAAACATCGTACCTGACATTGAATCCATTGCCCAAGATTGCTTAAAGTCTTGGGAAGGCCGTCTGATCACCACTTTCCTTGAAATGAAAACGTTCACCTTCAACGTTGCTCTGCTTTCAATTTTCGGGAAAGAAGAGATTCTGTACAGAGATGCTCTGAAACGGTGCTACTACACTCTGGAGCAAGGGTACAACTCAATGCCCATAAACGTTCCAGGGACACTGTTCCACAAGGCGATGAAGGCAAGGAAGGAACTTGCACAAATCGTGGCCCAAATAATCTCGAGCAGAAGGCAGAGGAAGCAGGATTTTCACAAGGACCTTTTGGGTTCATTCATGGATGAGAAATCAGGGCTCACCGATGAGCAGATAGCGGATAATGTAATTGGCGTCATATTCGCAGCTCGTGACACCACCGCCAGTGTGCTGACGTGGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAGGGTCTAAATTGGGAAGATGCAAAAAAGATGCCAATAACTTCAAGGGTCATTCAGGAGACTCTAAGAGTTGCTTCAATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTTGAATACCAAGGGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATACACCACAGTCCAGACAACTTCAAGGAGCCAGAAAAATTTGATCCCTCAAGATTTGAGGCTGCTCCAAAGCCCAACACTTTTATGCCATTTGGCAGTGGGATCCACATGTGTCCAGGGAATGAATTAGCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCTTCCCCAAAACGGCTTACCCATCACATTATTTCCCAAGAGCAAGTAG

>Glyma01g35660.2   sequence type=CDS   gene model=Glyma01g35660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGATTTCCAGCCCCGAGGCTGCAAAGTTTGTGCTCAACAAAGCTCAACTCTTCAAGCCAACATTCCCAGCAAGCAAAGAGAGGATGTTGGGAAAACAAGCTATCTTCTTTCACCAAGGAGAGTACCATGCTAACTTGAGAAGGCTTGTTCTTCGCACCTTCATGCCCGAAGCCATAAAAAACATCGTACCTGACATTGAATCCATTGCCCAAGATTGCTTAAAGTCTTGGGAAGGCCGTCTGATCACCACTTTCCTTGAAATGAAAACGTTCACCTTCAACGTTGCTCTGCTTTCAATTTTCGGGAAAGAAGAGATTCTGTACAGAGATGCTCTGAAACGGTGCTACTACACTCTGGAGCAAGGGTACAACTCAATGCCCATAAACGTTCCAGGGACACTGTTCCACAAGGCGATGAAGGCAAGGAAGGAACTTGCACAAATCGTGGCCCAAATAATCTCGAGCAGAAGGCAGAGGAAGCAGGATTTTCACAAGGACCTTTTGGGTTCATTCATGGATGAGAAATCAGGGCTCACCGATGAGCAGATAGCGGATAATGTAATTGGCGTCATATTCGCAGCTCGTGACACCACCGCCAGTGTGCTGACGTGGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAGGGTCTAAATTGGGAAGATGCAAAAAAGATGCCAATAACTTCAAGGGTCATTCAGGAGACTCTAAGAGTTGCTTCAATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTTGAATACCAAGGGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATACACCACAGTCCAGACAACTTCAAGGAGCCAGAAAAATTTGATCCCTCAAGATTTGAGGCTGCTCCAAAGCCCAACACTTTTATGCCATTTGGCAGTGGGATCCACATGTGTCCAGGGAATGAATTAGCCAAGTTGGAGATTTTGGTCCTCCTACATCATCTGACCACAAAGTACAGGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCTTCCCCAAAACGGCTTACCCATCACATTATTTCCCAAGAGCAAGTAG

Predicted protein sequences of Glyma01g35660

Limit To All Plant Sequences

>Glyma01g35660.1   sequence type=predicted peptide   gene model=Glyma01g35660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELSTMFCLCASFLFIVLFRALIKPYYVSKRRDLPLPPGSMGWPYIGETFQMYSQDPNVFFASKIKRFGSMFKSHILGCPCVMISSPEAAKFVLNKAQLFKPTFPASKERMLGKQAIFFHQGEYHANLRRLVLRTFMPEAIKNIVPDIESIAQDCLKSWEGRLITTFLEMKTFTFNVALLSIFGKEEILYRDALKRCYYTLEQGYNSMPINVPGTLFHKAMKARKELAQIVAQIISSRRQRKQDFHKDLLGSFMDEKSGLTDEQIADNVIGVIFAARDTTASVLTWIVKYLGENPSVLEAVTEEQECILKSKEESGEDKGLNWEDAKKMPITSRVIQETLRVASILSFTFREAVEDVEYQGYLIPKGWKVLPLFRNIHHSPDNFKEPEKFDPSRFEAAPKPNTFMPFGSGIHMCPGNELAKLEILVLLHHLTTKYRWSVVGAKNGIQYGPFALPQNGLPITLFPKSK*

>Glyma01g35660.2   sequence type=predicted peptide   gene model=Glyma01g35660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFKSHILGCPCVMISSPEAAKFVLNKAQLFKPTFPASKERMLGKQAIFFHQGEYHANLRRLVLRTFMPEAIKNIVPDIESIAQDCLKSWEGRLITTFLEMKTFTFNVALLSIFGKEEILYRDALKRCYYTLEQGYNSMPINVPGTLFHKAMKARKELAQIVAQIISSRRQRKQDFHKDLLGSFMDEKSGLTDEQIADNVIGVIFAARDTTASVLTWIVKYLGENPSVLEAVTEEQECILKSKEESGEDKGLNWEDAKKMPITSRVIQETLRVASILSFTFREAVEDVEYQGYLIPKGWKVLPLFRNIHHSPDNFKEPEKFDPSRFEAAPKPNTFMPFGSGIHMCPGNELAKLEILVLLHHLTTKYRWSVVGAKNGIQYGPFALPQNGLPITLFPKSK*

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