SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31730 | AT | Annotation by Michelle Graham. TAIR10: Adaptin family protein | chr1:11359907-11363916 FORWARD LENGTH=938 | SoyBase | E_val: 0 | ISS |
| GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0030117 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane coat | SoyBase | N/A | ISS |
| GO:0030276 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: clathrin binding | SoyBase | N/A | ISS |
| KOG1062 | KOG | Vesicle coat complex AP-1, gamma subunit | JGI | ISS | |
| PTHR22780 | Panther | ADAPTIN, ALPHA/GAMMA/EPSILON | JGI | ISS | |
| PTHR22780:SF12 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01602 | PFAM | Adaptin N terminal region | JGI | ISS | |
| UniRef100_G7L7U1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AP-4 complex subunit epsilon-1 n=1 Tax=Medicago truncatula RepID=G7L7U1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J870 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J870_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g35650 not represented in the dataset |
Glyma01g35650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g35240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g153200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g35650.1 sequence type=CDS gene model=Glyma01g35650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCTCTCACCATGGCCACTCGAAGGAGTTTCTGGACCTCATCAAGTCCATCGGCGAGGCCCGATCCAAGGCCGAGGAGGACCGCATCGTCCTCCGTGAGATCGAAACCCTAAAACGCCTCCTCAACGACGCCGACACACCAAAACGCAAGATCAAGGAGTACATCATCCGCCTCCTCTACGTCGAGATGCTCGGCCACGACGCGTCGTTCGGCTACATCCACGCCGTGAAGATGACTCACCACGACGCCCTCCTCCTCAAACGCACCGGCTACCTCGCCGTCACGCTCTTCCTCAGCGACGACCACGACCTCATCATCCTCATCGTCAACACAATCCAGAAGGATCTTGCCTCCGATAACTACCTCGTCGTTTGCGCCGCGCTTAACGCCGTTTGTAGACTCATCAACGAGGAGACCATCCCCGCCGTGCTGCCACGTGTTGTGGATCTGCTTAACCACTCCAAGGACGCCGTTAGGAAGAAGGCCGTTATGTCGCTGCACCGGTTTTACCTGAAATCTCCGTCCTCCGTTTCGCATTTGCTTTCCAATTTCCGTAAGCGGTTGTGCGATAATGATCCCGGAGTAATGGGCGCTTCTCTGTGCCCGCTTTTTAATCTCGTTTCCGATGATGTTCACTCTTATAAGGACCTTGTCGTTAGCTTTGTTAATATTCTTAAGCAAGTTGCAGAGCATAGGTTGCCGAAGACTTATGATTATCACCAAATGCCTGCACCTTTCATTCAGATTAAGTTGCTGAAAATACTTGCATTACTGGGAAGTGGGGACAAGCAGGCTAGTGGACACATGTACACTGTGCTTGAGGATATAATTAGGAGGAGTGATTCAATGACGAACATAGGGAATGCTGTTCTCTATCAGTGCATATGCTGTGTGGCTTCTATATATCCCAATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAGAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTGATAAAGTTAAGTCCACATATTGCAGAACAACACCAACTGGCCGTCATTGACTGCTTGGAGGACCCAGATGATAGTCTGAAACGAAAAACTTTCGAACTGTTATACAAAATGACCAAGTCCTCCAATGTGGAAGTGATTGTTGACAGAATGATTGATTACATGATTAGCATAAGTGATGACCATTATAAAACTTATATAGCATCTCGATGTGTGGAACTTGCTGAGCAATTTGCACCAAGTAATCATTGGTTTATACAGACCATGAATAAAGTTTTTGAGCATGCTGGAGATCTTGTTAATATTAAGGTGGCACATAATTTGATGCGGTTGATTGCTGAAGGATTTGGAGAGGACGATGATGCTGCAGATAGTCAGTTGAGATCATCTGCTGCCGAGTCATATTTGCGCATTATTGGAGAGCCAAAGCTTCCATCAGTGTTTCTTCAAGTCATCTGTTGGGTTCTGGGGGAATACGGAACAGCAGATGGAAAGTATTCTGCTTCTTATATCAGTGGGAAGTTATGTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAGGCTTATGCAATTTCAGCACTGTTGAAAATTTATGCATTTGAAGTAGCAGCTGGGAGGAAAGTGGATATCCTATCTGAGTGCCAATCGTTGATTGAAGAATCATTGGCATCACACTCTACAGATTTGCAGCAACGTGCTTATGAATTGCAAGCTCTTATAGGTTTGGATGTACAAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAGGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAAAGGGGTGCTAAATCCTATATTCCTGAGGATGTGCGCACTGGAATGGGGAATATGAACAATTTCAGAAGCCAAGATCATCATGAAACTTTGCAGCATGGTCTAAGATTTGAGGCATATGAAGTTCCGAAGGCTCCAATGCAACCAAAAGTTACTCCAGTTTCATTTGCATCCTCAGCAGACATTGTTCCAGTACCCGAGGTTTTGTCTTCCAGGGAGACCCACCATATCTCATCAGTGGGATCAACATCTGAGGCTGGATCATCAGAGCTTAAGCTACGGCTTGATGGTGTTCAGAAGAAATGGGGTAAACCAATGTATTCGTCTTCAACATCATCTGCCTCTGTCTCGTATTCTACTTCCCAAAAACCAACGAATGGGGCAACTCAGGTGGATGGTGCTACAACTGTCAATTCAAAAGTGCGTGATAGTTATGATTCAAGAAAGACACAGGTTGAGATTACTCCAGAAAAGCAAAAGCTTGCTGCTTCTTTGTTTGGTGGTTCAACTAAACCTGAGAAAAGATCATCTACAAGTCATAAGGTTTCAAAATCTAGTGCTAGTGCTGCAGACGGATCTCAGGGATCAAAGGCTGCGGTTGTACCCAATGACGTAGCTGTGGAAAAAACAATTCATCAACCACCTCCTCCTGATTTGCTTGACTTGGGTGAGCCAACTGTCACTACAGCTCCTCCTTATGTGGACCCATTCAAGGAATTGGAAGGACTTCTTGACCCAAGCACTAAGTCTGCAACAAATCATAATGTAGCTGCTGCTACAAATGCCCCTGATATTATGTCACTCTATGCCGAGACTACTGCCAGTGGTGGTTATTCTATACCCGTGAGTGGGGGGTATGATGTAAATCTTTTATCTGAATTGTCAAATGCAGCAGCAAAAGCTACTAGTGGAGAAACAATTGTGACGTCTTTGCCACAATCTATTATGGGTCGAAATGCTAAAGATTCTTTGGAGAAGGATGCTTTAGTGAGGCAGATGGGTGTGAATCCCTCGAGTCAGAATCCTAACTTGTTCAGTGACTTGCTTGGCTAA
>Glyma01g35650.1 sequence type=predicted peptide gene model=Glyma01g35650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSHHGHSKEFLDLIKSIGEARSKAEEDRIVLREIETLKRLLNDADTPKRKIKEYIIRLLYVEMLGHDASFGYIHAVKMTHHDALLLKRTGYLAVTLFLSDDHDLIILIVNTIQKDLASDNYLVVCAALNAVCRLINEETIPAVLPRVVDLLNHSKDAVRKKAVMSLHRFYLKSPSSVSHLLSNFRKRLCDNDPGVMGASLCPLFNLVSDDVHSYKDLVVSFVNILKQVAEHRLPKTYDYHQMPAPFIQIKLLKILALLGSGDKQASGHMYTVLEDIIRRSDSMTNIGNAVLYQCICCVASIYPNPKLLEAAADVIAKFLKSDSHNLKYMGIDALGRLIKLSPHIAEQHQLAVIDCLEDPDDSLKRKTFELLYKMTKSSNVEVIVDRMIDYMISISDDHYKTYIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDAADSQLRSSAAESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKYSASYISGKLCDIAEAYSNDENVKAYAISALLKIYAFEVAAGRKVDILSECQSLIEESLASHSTDLQQRAYELQALIGLDVQAVETIMPRDASCEDIEVDKNLSFLNGYVQQSLERGAKSYIPEDVRTGMGNMNNFRSQDHHETLQHGLRFEAYEVPKAPMQPKVTPVSFASSADIVPVPEVLSSRETHHISSVGSTSEAGSSELKLRLDGVQKKWGKPMYSSSTSSASVSYSTSQKPTNGATQVDGATTVNSKVRDSYDSRKTQVEITPEKQKLAASLFGGSTKPEKRSSTSHKVSKSSASAADGSQGSKAAVVPNDVAVEKTIHQPPPPDLLDLGEPTVTTAPPYVDPFKELEGLLDPSTKSATNHNVAAATNAPDIMSLYAETTASGGYSIPVSGGYDVNLLSELSNAAAKATSGETIVTSLPQSIMGRNAKDSLEKDALVRQMGVNPSSQNPNLFSDLLG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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