SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G45300 | AT | Annotation by Michelle Graham. TAIR10: beta-amylase 2 | chr5:18353636-18356696 FORWARD LENGTH=689 | SoyBase | E_val: 0 | ISS |
| GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0048831 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of shoot development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016161 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: beta-amylase activity | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| PF01373 | PFAM | Glycosyl hydrolase family 14 | JGI | ISS | |
| PF05687 | PFAM | Plant protein of unknown function (DUF822) | JGI | ISS | |
| UniRef100_G7K5E9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-amylase n=1 Tax=Medicago truncatula RepID=G7K5E9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J858 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1J858_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g35500 not represented in the dataset |
Glyma01g35500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g35070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g151800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g35500.2 sequence type=CDS gene model=Glyma01g35500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGCATAAACGACGACGCTTCAACCCAAGATGTCGACCCTCAGAGCGACCACAGCTCCGATTACTTAGCTCACCCTAACTCCCACCCCGAACCCCACCCTCAGCCCCGCCGTCCGCGGGGCTTCGCGGCGGCGCCGGTCACCACCAATACCGGCGGCAAGGGGAAGAAGGAGAGGGAGAAGGAGAAGGAGCGCACCAAGCTCCGCGAGCGACACCGTCGAGCCATCACCAGCCGCATGCTCGCCGGACTCCGCCAGTACGGAAATTTCCCCCTGCCAGCGCGTGCCGACATGAACGACGTACTCGCCGCGCTCGCGCGTGAGGCTGGCTGGGTCGTCGACGCCGACGGCACCACCTACCGCCAGTGCCCCCCTCCTTCCAACGTGGGGTCATTTGCGGCTAGGTCTGTTGAAAGTCAACTCTCTGGTGGTTCTTTGAGGAATTGTTCTGTCAAGGAAACTATTGAGAACCAGACAGCTGTGCTTAGAATTGATGAATGCTTGTCGCCTGCATCCATTGATTCCGTTGTAATTGCAGAAAGGGACTCAAAGAATGAGAAATATACAAATGCTAGACCCATCAATACAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCATGAAAATGACTTTACTAGCACGCCATACGTTTCTGTTTATGTAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATAAAGCAGGAGCTCATCCATATCAAGTCTTTAAATGTAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCTCACAGAAATATGTCTGGTCTGGTTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAACTGAAGTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAACGATTCTAGTGATGCATTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAAGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACTGAATGCCTTTCTTGGGGGATTGACAAAGAACGAGTTCTCAAAGGCAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTGGAGGTTGGACTTGGAGCATCTGGAGAGCTAAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATTGGTGAGTTTCAGTGCTATGATAAATACCTGCAAAATAGTCTGCGCAGAGCAGCCAAATTGCATGGTCACTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAATTCTATGCCACATGAAACTGGATTCTTTTGTGAGCGAGGCGATTATGACAACTATTATGGACGCTTCTTCTTACACTGGTACTCCCAGACATTAATAGACCATGCAGATAACGTTTTGTCTCTTGCAACCCTTGCTTTTGAGGAAACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAGACTCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAATCCAACATATCAGGATGGATACTCTCCTGTGTTTGAGGTTCTGAGAAAACATGCTGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGTCAGGAAGCTTATGAACCGTTGATTGATCCAGAGGGTTTGAGTTGGCAGGTGCTAAACTCAGCTTGGGATCGTGGGTTGATGGCTGCTGGAGAGAATGCACTCCTTTGCTATGGTAGAGAAGGATACAAGAGATTGGTTGAGATGGCAAAGCCCAGAAATGATCCTGATTGCCGGCACTTCTCTTTCTTTGTTTATCAGCAACCATCTTTGCTGCAGGCAAATGTTTGCTTGTCTGAACTGGATTTCTTCGTCAAATGCATGCATGGTGAGATGTCAGATCTATAA
>Glyma01g35500.2 sequence type=predicted peptide gene model=Glyma01g35500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSINDDASTQDVDPQSDHSSDYLAHPNSHPEPHPQPRRPRGFAAAPVTTNTGGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSNVGSFAARSVESQLSGGSLRNCSVKETIENQTAVLRIDECLSPASIDSVVIAERDSKNEKYTNARPINTVDCLEADQLMQDIHSGVHENDFTSTPYVSVYVKLPAGIINKFCQLIDPEGIKQELIHIKSLNVDGVVVDCWWGIVEGWSSQKYVWSGYRELFNIIREFKLKLQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQNSLRRAAKLHGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTYQDGYSPVFEVLRKHAVTMKFVCLGFHLSSQEAYEPLIDPEGLSWQVLNSAWDRGLMAAGENALLCYGREGYKRLVEMAKPRNDPDCRHFSFFVYQQPSLLQANVCLSELDFFVKCMHGEMSDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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