SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31420 | AT | Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr1:11250360-11253516 FORWARD LENGTH=591 | SoyBase | E_val: 0 | ISS |
| GO:0000271 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0007169 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0009932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell tip growth | SoyBase | N/A | ISS |
| GO:0010817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0030243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004713 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF479 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF08263 | PFAM | Leucine rich repeat N-terminal domain | JGI | ISS | |
| UniRef100_C6ZRV8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat transmembrane protein kinase n=1 Tax=Glycine max RepID=C6ZRV8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J845 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J845_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma01g35390 not represented in the dataset |
Glyma01g35390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g34940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g150700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g35390.1 sequence type=CDS gene model=Glyma01g35390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCATTTGTCTTTTGAAATGGCAATGGCCGTGGCTTCTTTATGTTCTGCTGATACATGTTGTAATCAATAAAAGCGAAGCAATCACCCCCGATGGTGAGGTGCTGCTCAGCTTTAGGACATCAGTTGTTAGTTCTGATGGTATCCTATTACAGTGGAGGCCAGAGGATCCTGACCCATGTAAATGGAAAGGAGTGAAATGTGATCTGAAAACCAAAAGAGTAACACATCTGAGTCTATCTCACCATAAGTTAAGTGGGTCTATATCACCTGACCTTGGGAAGCTAGAGAATCTGAGGGTTCTTGCTCTTCATAACAACAACTTCTATGGGTCAATTCCACCAGAGTTGGGAAATTGCACTGAATTGGAGGGAATATTTTTACAGGGTAATTACCTTAGTGGAGCGATTCCAAGTGAAATAGGAAACCTTTCACAGCTTCAAAATTTGGATATATCAAGCAATTCCCTCAGTGGGAATATTCCTGCATCACTTGGGAAGTTGTATAATCTCAAAAATTTCAATGTATCAACCAATTTTCTGGTCGGACCTATACCTTCTGATGGTGTCCTTGCCAACTTTACTGGAAGCTCCTTTGTTGGGAATCGTGGTTTGTGTGGAGTGAAAATAAATTCAACATGTAGAGATGATGGTTTGCCGGATACCAATGGTCAATCTACTAACTCAGACCAAAATCAAATAGGAAAGAAGAAATATTCTGGCCGGCTGCTCATCAGTGCATCAGCAACTGTGGGAGCTCTACTTTTGGTGGCACTTATGTGCTTCTGGGGTTGTTTTCTTTATAAAAAGTTTGGCAAAAACGACAGAATAAGTCTGGCAATGGATGTTGGTGCAGGTGCATCAATTGTGATGTTTCATGGAGACTTACCATATTCTTCAAAAGACATCATCAAGAAACTAGAGACTTTGAATGAGGAACACATAATAGGGATAGGGGGGTTTGGAACTGTTTACAAGCTAGCAATGGATGATGGGAATGTGTTTGCTTTGAAAAGGATTGTAAAGTTGAATGAGGGGTTTGATCGTTTTTTTGAGAGGGAGCTTGAAATTCTTGGTAGCATCAAACACCGTTATCTAGTGAACTTACGAGGATATTGCAATTCACCCACGTCAAAGTTGTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGAAAGAGCTGAGCAACTAGACTGGGATTCACGCTTGAATATAATCATGGGAGCTGCAAAAGGGCTTGCCTACTTGCACCATGATTGTTCCCCCAGGATCATACACCGAGACATAAAATCTAGCAACATTTTACTTGACGGAAACTTGGATGCTCGGGTCTCTGATTTTGGACTTGCCAAACTTCTGGAGGATGAAGAATCTCACATCACCACTATTGTTGCTGGAACGTTTGGTTATCTAGCTCCAGAGTATATGCAAAGTGGCAGAGCAACTGAGAAGTCTGATGTGTATAGCTTTGGTGTGTTGACACTTGAAGTGCTGAGTGGAAAGCGGCCAACAGACGCAGCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGGTTGAATTTTCTAATTACAGAAAATAGGCCGAGGGAAATTGTTGACCCTCTATGTGAAGGGGTGCAAATGGAGAGCCTTGATGCCTTGCTCTCTGTGGCTATTCAGTGCGTTTCCTCAAGTCCAGAGGATCGACCCACCATGCACCGAGTGGTGCAATTGCTTGAATCCGAGGTCGTAACTCCATGCCCTAGTGACTTCTATGACTCCAACTCCGATTAG
>Glyma01g35390.1 sequence type=predicted peptide gene model=Glyma01g35390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGICLLKWQWPWLLYVLLIHVVINKSEAITPDGEVLLSFRTSVVSSDGILLQWRPEDPDPCKWKGVKCDLKTKRVTHLSLSHHKLSGSISPDLGKLENLRVLALHNNNFYGSIPPELGNCTELEGIFLQGNYLSGAIPSEIGNLSQLQNLDISSNSLSGNIPASLGKLYNLKNFNVSTNFLVGPIPSDGVLANFTGSSFVGNRGLCGVKINSTCRDDGLPDTNGQSTNSDQNQIGKKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDRISLAMDVGAGASIVMFHGDLPYSSKDIIKKLETLNEEHIIGIGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDYLPGGSLDEALHERAEQLDWDSRLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKSDVYSFGVLTLEVLSGKRPTDAAFIEKGLNIVGWLNFLITENRPREIVDPLCEGVQMESLDALLSVAIQCVSSSPEDRPTMHRVVQLLESEVVTPCPSDFYDSNSD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
