Glyma01g35180 - SoyBase

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Report for Sequence Feature Glyma01g35180

Feature Type:	gene_model
Chromosome:	Gm01
Start:	47718337
stop:	47725678
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g35180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31880	AT	Annotation by Michelle Graham. TAIR10: DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein \| chr1:11447804-11450053 FORWARD LENGTH=344	SoyBase	E_val: 6.00E-154	ISS
GO:0009734	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0015250	GO-mf	Annotation by Michelle Graham. GO Molecular Function: water channel activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF36	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF08381	PFAM	Disease resistance/zinc finger/chromosome condensation-like region	JGI		ISS
UniRef100_Q17TI5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein BREVIS RADIX n=1 Tax=Arabidopsis thaliana RepID=BRX_ARATH	SoyBase	E_val: 3.00E-151	ISS
UniRef100_UPI00023378D7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023378D7 related cluster n=1 Tax=unknown RepID=UPI00023378D7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g35180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g35180

Paralog	Evidence	Comments
Glyma09g34601	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g35180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g148900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g35180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g35180

Limit To All Plant Sequences

>Glyma01g35180.2   sequence type=transcript   gene model=Glyma01g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATATAAATACGACAACCTCAAAAACCGTTTCATTTTCTCGCTTCAAAATATCGTAACCCCCACACACCTCTTTGTTTCTTCTCTTCCTCTGCATTTTCCAGCATTTTCACCTCACACTTGTACTTGAATAATTTTCTCTTCGTGTCACTCTCATTGGCGCGTGTCAGTGTTTTCTTTCATGGCATCATTTTAGTAGCGTTTCACTTACTCTGTAAACTGACAGAGCATTCTTTGTTGTTTTGCATTGCCATAGAACTCGACAACTGAGTCTCAGATCCCAAGCCAAATTTTTGCCATGCGAAAAACGACAACAACCATCGATGCTGTCGAGGGAAGGAAAACTAGTATAAAAGAGAAGAGAGGACCCAAAACCTGAAAGCGCAGAACAAGAGTAGTGGAAGATTCTTAATGCGTGTTTGTGTGTGTATCTGTGCAGAGAGACAAAGCACAAGAAGAAGCAGTTCAGGTTTCCTTGGAAGGAAAGTGAGAAGTGGTGAAAATGTTTACATGCATAGCGTGCACGAAGCAAGCGGCGAAGGAGAAGGAAGAAGAGGGTGAGAGTGGCACGCCGAGTACAAATAAAGAAGCCGTCAAAAGCCTGAGTGCTCAGTTAAAGGATATGGCACTGAAGTTTTCAGGTGCCTACAAGCAGTGCAAACCTTGCACAGGGTCTAGTACCTACAAGAAAGGACAGAGGCCATATCCTGACTTTGACACCATTTCAGAAGGGGTTCCATACCCTTATATTGGAGGTGCAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCAATTTCCTTGGTGCTAGATCAGACCAAAGATTTATGGGGGGATTCAGTGGTGATAGGACCCCTAGAGGGCCTCAATCAGCACCAGCCTGTGATGTAGTTGTTGAGGATGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAATGGAGGAAATGATCTCAAAAGAATTCGCTTTAGCCGAGAGATTTTTGACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTATGACAGAATCATGGAACTTTACAACGTGCAGAGATTCAATCGACAAGCTCTTAATACTCCTTCAAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGAATGACATCTGGACATGATAGCCCCATGCACTCAATGTCTTTAAAGGACTGGACACCCAGGAATCACTATAAACCCTCAGGGAATAACCCTTCTGAAGCTATGGATCAAGGTGGTGGTGGCCAAAATTTCCATGCAGCTTCATCCGTGGAAGCATCAAGGACAACCACCTCTTCTAGAGACGAGCGTTCAATGAGCAATGCCAGTGATTTGGAGACAGAATGGATAGAGCAAGATGAACCTGGAGTCTACATTACAATCAGGCAATTAGCTGACGGAACAAAGGAGCTTCGCCGTGTCAGATTCAGCCGGGAGAGATTTGGGGAGGGACATGCAAAGAAATGGTGGGAAGACAACAGAGAAAGAATACAAGCTCAATATCTTTGAAGTGTTGTGGCATTGAAGAGAAATGGATGTCCCAAGCTGGTCGAATCCTCAATTTTGTTTTCTAGAGATTGTAGTGTTGTTGACTCCAGTTTATGGAGTGGAGTTGTATACAGAAAACTAGCCTTTTCTCCAATACCATTGGTGATGGTCTCATGGCATTAATTAAATTGTTGATACCCTCACAAACAATGCAAGCCCAGAATTTGGCATTGTGGTGACTCTATTTAAGGGTCAGTAGCCATGGTATTGGGAGGTATAATCTTGCATATTATATATAGATGTATTTATTCACCCACCCCATTCTCTTTATTATCTTTTTTTTTTTTAATCTTATTGGGATGCTTTTGTGGTCATTGTATTTGTCTTTGCGTGAATTAATTATCAAAGCAAGTGAAAACACCATTACTTAATGCTTA

>Glyma01g35180.3   sequence type=transcript   gene model=Glyma01g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGCCATTTCAAATCAAAATGTCCCTCTGTAGCTAGATCGATATAGGTATGATTTTTCTTGTTAATTTTTTATTTTCATCCAAAAAGGACATATTTGCTTATCAAATGTCACTTGGTCATTAATTTTGTATGTTTCTCAGAAAATAGTTAAAGGATATGGCACTGAAGTTTTCAGGTGCCTACAAGCAGTGCAAACCTTGCACAGGGTCTAGTACCTACAAGAAAGGACAGAGGCCATATCCTGACTTTGACACCATTTCAGAAGGGGTTCCATACCCTTATATTGGAGGTGCAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCAATTTCCTTGGTGCTAGATCAGACCAAAGATTTATGGGGGGATTCAGTGGTGATAGGACCCCTAGAGGGCCTCAATCAGCACCAGCCTGTGATGTAGTTGTTGAGGATGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAATGGAGGAAATGATCTCAAAAGAATTCGCTTTAGCCGAGAGATTTTTGACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTATGACAGAATCATGGAACTTTACAACGTGCAGAGATTCAATCGACAAGCTCTTAATACTCCTTCAAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGAATGACATCTGGACATGATAGCCCCATGCACTCAATGTCTTTAAAGGACTGGACACCCAGGAATCACTATAAACCCTCAGGGAATAACCCTTCTGAAGCTATGGATCAAGGTGGTGGTGGCCAAAATTTCCATGCAGCTTCATCCGTGGAAGCATCAAGGACAACCACCTCTTCTAGAGACGAGCGTTCAATGAGCAATGCCAGTGATTTGGAGACAGAATGGATAGAGCAAGATGAACCTGGAGTCTACATTACAATCAGGCAATTAGCTGACGGAACAAAGGAGCTTCGCCGTGTCAGATTCAGCCGGGAGAGATTTGGGGAGGGACATGCAAAGAAATGGTGGGAAGACAACAGAGAAAGAATACAAGCTCAATATCTTTGAAGTGTTGTGGCATTGAAGAGAAATGGATGTCCCAAGCTGGTCGAATCCTCAATTTTGTTTTCTAGAGATTGTAGTGTTGTTGACTCCAGTTTATGGAGTGGAGTTGTATACAGAAAACTAGCCTTTTCTCCAATACCATTGGTGATGGTCTCATGGCATTAATTAAATTGTTGATACCCTCACAAACAATGCAAGCCCAGAATTTGGCATTGTGGTGACTCTATTTAAGGGTCAGTAGCCATGGTATTGGGAGGTATAATCTTGCATATTATATATAGATGTATTTATTCACCCACCCCATTCTCTTTATTATCTTTTTTTTTTTTAATCTTATTGGGATGCTTTTGTGGTCATTGTATTTGTCTTTGCGTGAATTAATTATCAAAGCAAGTGAAAACACCATTACTTAATGCTTA

Coding sequences of Glyma01g35180

Limit To All Plant Sequences

>Glyma01g35180.1   sequence type=CDS   gene model=Glyma01g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAAAGGATATGGCACTGAAGTTTTCAGGTGCCTACAAGCAGTGCAAACCTTGCACAGGGTCTAGTACCTACAAGAAAGGACAGAGGCCATATCCTGACTTTGACACCATTTCAGAAGGGGTTCCATACCCTTATATTGGAGGTGCAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCAATTTCCTTGGTGCTAGATCAGACCAAAGATTTATGGGGGGATTCAGTGGTGATAGGACCCCTAGAGGGCCTCAATCAGCACCAGCCTGTGATGTAGTTGTTGAGGATGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAATGGAGGAAATGATCTCAAAAGAATTCGCTTTAGCCGAGAGATTTTTGACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTATGACAGAATCATGGAACTTTACAACGTGCAGAGATTCAATCGACAAGCTCTTAATACTCCTTCAAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGAATGACATCTGGACATGATAGCCCCATGCACTCAATGTCTTTAAAGGACTGGACACCCAGGAATCACTATAAACCCTCAGGGAATAACCCTTCTGAAGCTATGGATCAAGGTGGTGGTGGCCAAAATTTCCATGCAGCTTCATCCGTGGAAGCATCAAGGACAACCACCTCTTCTAGAGACGAGCGTTCAATGAGCAATGCCAGTGATTTGGAGACAGAATGGATAGAGCAAGATGAACCTGGAGTCTACATTACAATCAGGCAATTAGCTGACGGAACAAAGGAGCTTCGCCGTGTCAGATTCAGCCGGGAGAGATTTGGGGAGGGACATGCAAAGAAATGGTGGGAAGACAACAGAGAAAGAATACAAGCTCAATATCTTTGA

>Glyma01g35180.2   sequence type=CDS   gene model=Glyma01g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTACATGCATAGCGTGCACGAAGCAAGCGGCGAAGGAGAAGGAAGAAGAGGGTGAGAGTGGCACGCCGAGTACAAATAAAGAAGCCGTCAAAAGCCTGAGTGCTCAGTTAAAGGATATGGCACTGAAGTTTTCAGGTGCCTACAAGCAGTGCAAACCTTGCACAGGGTCTAGTACCTACAAGAAAGGACAGAGGCCATATCCTGACTTTGACACCATTTCAGAAGGGGTTCCATACCCTTATATTGGAGGTGCAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCAATTTCCTTGGTGCTAGATCAGACCAAAGATTTATGGGGGGATTCAGTGGTGATAGGACCCCTAGAGGGCCTCAATCAGCACCAGCCTGTGATGTAGTTGTTGAGGATGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAATGGAGGAAATGATCTCAAAAGAATTCGCTTTAGCCGAGAGATTTTTGACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTATGACAGAATCATGGAACTTTACAACGTGCAGAGATTCAATCGACAAGCTCTTAATACTCCTTCAAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGAATGACATCTGGACATGATAGCCCCATGCACTCAATGTCTTTAAAGGACTGGACACCCAGGAATCACTATAAACCCTCAGGGAATAACCCTTCTGAAGCTATGGATCAAGGTGGTGGTGGCCAAAATTTCCATGCAGCTTCATCCGTGGAAGCATCAAGGACAACCACCTCTTCTAGAGACGAGCGTTCAATGAGCAATGCCAGTGATTTGGAGACAGAATGGATAGAGCAAGATGAACCTGGAGTCTACATTACAATCAGGCAATTAGCTGACGGAACAAAGGAGCTTCGCCGTGTCAGATTCAGCCGGGAGAGATTTGGGGAGGGACATGCAAAGAAATGGTGGGAAGACAACAGAGAAAGAATACAAGCTCAATATCTTTGA

>Glyma01g35180.3   sequence type=CDS   gene model=Glyma01g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTGAAGTTTTCAGGTGCCTACAAGCAGTGCAAACCTTGCACAGGGTCTAGTACCTACAAGAAAGGACAGAGGCCATATCCTGACTTTGACACCATTTCAGAAGGGGTTCCATACCCTTATATTGGAGGTGCAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCAATTTCCTTGGTGCTAGATCAGACCAAAGATTTATGGGGGGATTCAGTGGTGATAGGACCCCTAGAGGGCCTCAATCAGCACCAGCCTGTGATGTAGTTGTTGAGGATGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAATGGAGGAAATGATCTCAAAAGAATTCGCTTTAGCCGAGAGATTTTTGACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTATGACAGAATCATGGAACTTTACAACGTGCAGAGATTCAATCGACAAGCTCTTAATACTCCTTCAAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGAATGACATCTGGACATGATAGCCCCATGCACTCAATGTCTTTAAAGGACTGGACACCCAGGAATCACTATAAACCCTCAGGGAATAACCCTTCTGAAGCTATGGATCAAGGTGGTGGTGGCCAAAATTTCCATGCAGCTTCATCCGTGGAAGCATCAAGGACAACCACCTCTTCTAGAGACGAGCGTTCAATGAGCAATGCCAGTGATTTGGAGACAGAATGGATAGAGCAAGATGAACCTGGAGTCTACATTACAATCAGGCAATTAGCTGACGGAACAAAGGAGCTTCGCCGTGTCAGATTCAGCCGGGAGAGATTTGGGGAGGGACATGCAAAGAAATGGTGGGAAGACAACAGAGAAAGAATACAAGCTCAATATCTTTGA

Predicted protein sequences of Glyma01g35180

Limit To All Plant Sequences

>Glyma01g35180.1   sequence type=predicted peptide   gene model=Glyma01g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKDMALKFSGAYKQCKPCTGSSTYKKGQRPYPDFDTISEGVPYPYIGGASSTSTPAWDFTSSNFLGARSDQRFMGGFSGDRTPRGPQSAPACDVVVEDEDETKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREIFDKWQAQKWWGENYDRIMELYNVQRFNRQALNTPSRSEDEQRDSSYSRMTSGHDSPMHSMSLKDWTPRNHYKPSGNNPSEAMDQGGGGQNFHAASSVEASRTTTSSRDERSMSNASDLETEWIEQDEPGVYITIRQLADGTKELRRVRFSRERFGEGHAKKWWEDNRERIQAQYL*

>Glyma01g35180.2   sequence type=predicted peptide   gene model=Glyma01g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFTCIACTKQAAKEKEEEGESGTPSTNKEAVKSLSAQLKDMALKFSGAYKQCKPCTGSSTYKKGQRPYPDFDTISEGVPYPYIGGASSTSTPAWDFTSSNFLGARSDQRFMGGFSGDRTPRGPQSAPACDVVVEDEDETKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREIFDKWQAQKWWGENYDRIMELYNVQRFNRQALNTPSRSEDEQRDSSYSRMTSGHDSPMHSMSLKDWTPRNHYKPSGNNPSEAMDQGGGGQNFHAASSVEASRTTTSSRDERSMSNASDLETEWIEQDEPGVYITIRQLADGTKELRRVRFSRERFGEGHAKKWWEDNRERIQAQYL*

>Glyma01g35180.3   sequence type=predicted peptide   gene model=Glyma01g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALKFSGAYKQCKPCTGSSTYKKGQRPYPDFDTISEGVPYPYIGGASSTSTPAWDFTSSNFLGARSDQRFMGGFSGDRTPRGPQSAPACDVVVEDEDETKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREIFDKWQAQKWWGENYDRIMELYNVQRFNRQALNTPSRSEDEQRDSSYSRMTSGHDSPMHSMSLKDWTPRNHYKPSGNNPSEAMDQGGGGQNFHAASSVEASRTTTSSRDERSMSNASDLETEWIEQDEPGVYITIRQLADGTKELRRVRFSRERFGEGHAKKWWEDNRERIQAQYL*

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