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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G32120 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, p | SoyBase | E_val: 6.00E-147 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR16007 | Panther | EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED | JGI | ISS | |
| PTHR16007:SF5 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF04819 | PFAM | Family of unknown function (DUF716) | JGI | ISS | |
| UniRef100_G7K852 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein 45B n=1 Tax=Medicago truncatula RepID=G7K852_MEDTR | SoyBase | E_val: 3.00E-168 | ISS |
| UniRef100_I1J823 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J823_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g35110 not represented in the dataset |
Glyma01g35110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g34530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g148300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g35110.2 sequence type=transcript gene model=Glyma01g35110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATGGTTTAACCCTACCCCAAAAACAACAAACAAATAGTTACATCAATTGGGATTGTGAAATGTTACGTACCCAGTTGTTTGTGTAAAACAAAGTGAGGAAAGAGACCATTGTTTGCCAGTTCAACTAAGTACGCTGTTTTTTTATTTTCCCCACAAAACCATATAGCCATCGGTCGTAGATCCCACGAACCCCATCATCACACCACTCTCTGCAGTTTTCGCAACCAAACCTTCTTTTTTGTTTTTATTCCTCTGCTTATTGGATTCAACGAAGTTGTTGTGATTAAGGAGAACATAACTTTTTGAATCACACAGAGAGAGAGAGAGAAGAGACCCAGTACTTTCTGCATCCAAACCAATCACTACTGCGGTAAGTAAAACACCCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCTTCTTTTTCATCATTGTTATTTTTTTACTTTATGATTATGCTTATGCTTATATATGCCTTTTTTTCAGAACCCCATTATCCAGTGTAAAGTGTCTAATTATTCATCGGGTGTAGATTATAAAAATCTAAACTTTCATGCACACATACACAATCTACCTCTATTAGATATGCATAAGAGGGGAGAGAAAAGTTATGCTTTCTGATTTAGTCATGAGTACAAGATGGGTTAGACTTTGTTGGATTTTTATGATAGGAGGATAACTGGTAAGTTCATAAAGGGGAGATTCTTCAGTGATCATCTATCTGATTTGGTCCAGCTAAGGAATCATTCAGAAGCCAAGTTGATTAAGTACTAGAGAGATCATATTTTGGAGTAGTAAAAGTTAATCATAAGCATGGGATCTTTCAAGGGTCATGCTTTGCCAGGGACTTTGTTTCTTCTAGTTGGGGTGTGGCACGTATGGGGCTCTGTGGTGAGATATGTTCGCAATCCAATGGCGTTTCAAGTCAGAGTTTGGAATCCTGTGCCAGGGTTTGATGGGAGGCTGAAGCACCTGGAGCTATATGTTATTGCAATTGGTGCTTTCGTTGACATGTGCATCGAGCTTTTGTATTCACCACACCTCAAGATTTTTGTTGGTGGAGTCCTTAACCCCGCTCACATGAATGACTTTGAGCACTCTGGAATGCTTCTTATGTTTTTCATCTTTGGTGTTGTTGCCCTACTTTCCCAAAAGACCAGATTTCTTCCCTTGCCAGAAGGTGCTCTTTGTTTGCTTGCTGCCTCAGCATTCACTGCAGAGTACCTTCTTTTCTACTTCCATTCAACAACACACAAGGGCCTTGAGGGCTATTACCACACCCTCCTTGTCTTCCTGGTTGGACTGTGCATTTTATCTTCAATTGCTGGAGCCCTTTTGCCAACAAGCTTTCCAGTGGATTTATGCAATGGCATTGCTATAGCACTGCAAGGTTTATGGTTCTATCAGACAGCCTTTGTTCTCTATGGCCCTATGATGCCAAGTGGTTGTAAGCTTAGGGAAAACAGTGTCACATGTCATTCTATTGATAGTGAGGTTCGGGGCGAATTGCTTGCTAATTTTCAGCTCTTTGTTGCGGTTCTTGTGGTCCTTGTGGGAACTGTGGCATCATATGGCTTTGCTGCTTCAAGATATGGGAGTTCTGAAGTCAGGAACTTGCATGCAATTCAGACTGAATTAGATCAAGACTAAAGTTGCGTTGCTATTTTTTCTGGTGGTAGTTGAAATGTGTTGGCAGCATAGAGTTTCTTATAGAACATGTTTGTTGTATATTGAAGTGCAAAGGATCATGCATGCATGATCACTGAAAATTGAAAATTAACACCCCCTCCTCCCTCAAAAGGAATTATACATTTTTGACTTTTAGGAATCGGATGTCAAAGGAGCAACAAATTATTTTCCTTGGTGTATGATTACAAAATGTGGCAGGGGAGTTCACTTGGATCATATTTTCATTGGTTATCACTCTTTCTTTGTAATGATGCATTCACTAAACACTCATATTGCAAATTACCAGGACCATTATTTCAGACAACATAATGAAGAAGCAAAAGCTATGCCAAGAGTATAAGAATATAGCTGATTAGAAAGTCAACTAATGAAGTTATGAGTTTATCAAGCAAATTGTGAATTACAATATCCCATTTACGGGCTTATCAACCACATGTTTGTTGGATATTGACTCTTTCATGTTATCTTTTGTCGCATGATCAAAGAAAGATACAAAAATAATTACAATAAAACTTACACTTGTTTTATTGTTTGTCTT
>Glyma01g35110.1 sequence type=CDS gene model=Glyma01g35110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATCTTTCAAGGGTCATGCTTTGCCAGGGACTTTGTTTCTTCTAGTTGGGGTGTGGCACGTATGGGGCTCTGTGGTGAGATATGTTCGCAATCCAATGGCGTTTCAAGTCAGAGTTTGGAATCCTGTGCCAGGGTTTGATGGGAGGCTGAAGCACCTGGAGCTATATGTTATTGCAATTGGTGCTTTCGTTGACATGTGCATCGAGCTTTTGTATTCACCACACCTCAAGATTTTTGTTGGTGGAGTCCTTAACCCCGCTCACATGAATGACTTTGAGCACTCTGGAATGCTTCTTATGTTTTTCATCTTTGGTGTTGTTGCCCTACTTTCCCAAAAGACCAGATTTCTTCCCTTGCCAGAAGGTGCTCTTTGTTTGCTTGCTGCCTCAGCATTCACTGCAGAGTACCTTCTTTTCTACTTCCATTCAACAACACACAAGGGCCTTGAGGGCTATTACCACACCCTCCTTGTCTTCCTGGTTGGACTGTGCATTTTATCTTCAATTGCTGGAGCCCTTTTGCCAACAAGCTTTCCAGTGGATTTATGCAATGGCATTGCTATAGCACTGCAAGGTTTATGGTTCTATCAGACAGCCTTTGTTCTCTATGGCCCTATGATGCCAAGTGGTTGTAAGCTTAGGGAAAACAGTGTCACATGTCATTCTATTGATAGTGAGGTTCGGGGCGAATTGCTTGCTAATTTTCAGCTCTTTGTTGCGGTTCTTGTGGTCCTTGTGGGAACTGTGGCATCATATGGCTTTGCTGCTTCAAGATATGGGAGTTCTGAAGTCAGGAACTTGCATGCAATTCAGACTGAATTAGATCAAGACTAA >Glyma01g35110.2 sequence type=CDS gene model=Glyma01g35110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATCTTTCAAGGGTCATGCTTTGCCAGGGACTTTGTTTCTTCTAGTTGGGGTGTGGCACGTATGGGGCTCTGTGGTGAGATATGTTCGCAATCCAATGGCGTTTCAAGTCAGAGTTTGGAATCCTGTGCCAGGGTTTGATGGGAGGCTGAAGCACCTGGAGCTATATGTTATTGCAATTGGTGCTTTCGTTGACATGTGCATCGAGCTTTTGTATTCACCACACCTCAAGATTTTTGTTGGTGGAGTCCTTAACCCCGCTCACATGAATGACTTTGAGCACTCTGGAATGCTTCTTATGTTTTTCATCTTTGGTGTTGTTGCCCTACTTTCCCAAAAGACCAGATTTCTTCCCTTGCCAGAAGGTGCTCTTTGTTTGCTTGCTGCCTCAGCATTCACTGCAGAGTACCTTCTTTTCTACTTCCATTCAACAACACACAAGGGCCTTGAGGGCTATTACCACACCCTCCTTGTCTTCCTGGTTGGACTGTGCATTTTATCTTCAATTGCTGGAGCCCTTTTGCCAACAAGCTTTCCAGTGGATTTATGCAATGGCATTGCTATAGCACTGCAAGGTTTATGGTTCTATCAGACAGCCTTTGTTCTCTATGGCCCTATGATGCCAAGTGGTTGTAAGCTTAGGGAAAACAGTGTCACATGTCATTCTATTGATAGTGAGGTTCGGGGCGAATTGCTTGCTAATTTTCAGCTCTTTGTTGCGGTTCTTGTGGTCCTTGTGGGAACTGTGGCATCATATGGCTTTGCTGCTTCAAGATATGGGAGTTCTGAAGTCAGGAACTTGCATGCAATTCAGACTGAATTAGATCAAGACTAA
>Glyma01g35110.1 sequence type=predicted peptide gene model=Glyma01g35110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSFKGHALPGTLFLLVGVWHVWGSVVRYVRNPMAFQVRVWNPVPGFDGRLKHLELYVIAIGAFVDMCIELLYSPHLKIFVGGVLNPAHMNDFEHSGMLLMFFIFGVVALLSQKTRFLPLPEGALCLLAASAFTAEYLLFYFHSTTHKGLEGYYHTLLVFLVGLCILSSIAGALLPTSFPVDLCNGIAIALQGLWFYQTAFVLYGPMMPSGCKLRENSVTCHSIDSEVRGELLANFQLFVAVLVVLVGTVASYGFAASRYGSSEVRNLHAIQTELDQD* >Glyma01g35110.2 sequence type=predicted peptide gene model=Glyma01g35110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSFKGHALPGTLFLLVGVWHVWGSVVRYVRNPMAFQVRVWNPVPGFDGRLKHLELYVIAIGAFVDMCIELLYSPHLKIFVGGVLNPAHMNDFEHSGMLLMFFIFGVVALLSQKTRFLPLPEGALCLLAASAFTAEYLLFYFHSTTHKGLEGYYHTLLVFLVGLCILSSIAGALLPTSFPVDLCNGIAIALQGLWFYQTAFVLYGPMMPSGCKLRENSVTCHSIDSEVRGELLANFQLFVAVLVVLVGTVASYGFAASRYGSSEVRNLHAIQTELDQD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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