SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G29790 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits to 357 proteins in 124 species: Archae - 0; Bacteria - 74; Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other Eukaryotes - 190 (source: NCBI BLink). | chr4:14584228-14590123 FORWARD LENGTH=1211 | SoyBase | E_val: 7.00E-29 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_Q9SZQ2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT4g29790/F27B13_30 n=1 Tax=Arabidopsis thaliana RepID=Q9SZQ2_ARATH | SoyBase | E_val: 3.00E-26 | ISS |
| UniRef100_UPI000233B788 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B788 related cluster n=1 Tax=unknown RepID=UPI000233B788 | SoyBase | E_val: 5.00E-150 | ISS |
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Glyma01g35096 not represented in the dataset |
Glyma01g35096 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g148200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g35096.2 sequence type=transcript gene model=Glyma01g35096 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTAGCACATGCTGCATCTGAAGTTCTATGGCTCCAGTCTCTTCTCCATGAGCTCAAAGTTCCCATCCCTCCTCCAGTTATCTATTGTGACAACCAAAGTGCTGTTGCTATTAGTCACAACCCTGTGCTTCACTCCAGAACGAAACACATGGAATTAGACATTTTTTTTGTGAGGGAAAAGGTTCTGAACGAGTCTTTGGTTGTTTCCTACATTCCTGCACAACTCCAAGTTGCTGACATACTTACCAAATCACTCAGCAAGCATTTGTTCTACAACTTCCGCTCCAAACTCAGAGTACTTAGTACTGCTGAGCTTGTGGGGGGAGTGTTAGAGAGAAGTCTTAAATTCAGTTAGTTTTCAGTTAGTTGTAAAAACTGTTTGTGGTTACTATTAGCTGTCTCTTCTTAGTTAGTTAGTATGCTGTGATTCTGTTAGTTACTAACAGAATCAGTTAGTAATTGTTAGAGTCAGAGTTAGGCCTCATTGTGAACTCTGCTCTATATATAGACCTTTGTTGTAATCATCAAATCAATAATGAAAACACAATTATGATTTCTATCAGTTCTCTATCTCTCTCTAAATGTAACTCTCTTATGCAGGGGGACATTATTTTGGTTTTGTTGGGGATATATTTGCTGTTGAGAAAACAAACTCCATGCCCTACTTTATTGGCTGCTGTAAAGGGTGTTATCAACTCTGCTCATGCTTTTTCCAGCCAATTCTGGAGGCAGATGGAGCCTTTCTTTGGTTTGATAAGTGAGGAGGATATTGCTTACTGGAAACAGAAGGTACTAATTTTTTTCCCTAATGGTGATTATGAGTTTTGCTTTTCTTTTTAAGAGTATGTGTTAGATCAGTGATCGGCATGACTCTTGTCACACTTCAATTATGGTGCTTTCGTTTGAAAGAAAAGGTAGTTTAGTAATGCTTTGGATTTGTGCTGGTGTCCATAATCTTATAGCCCTGATGAATCCTTTGGTTGATTATTCTGGGTTTAGAATTTATTATTTTTACTATAAGTGTGTGCTGATTCTGTATGGAACTATGGCCATTATATTATCAGTTTGATACGCACACATGCACCCATGGTTTGATATATATTATATAATTACCAACCAATCTTGTATAAATTATAGTTTCATTAATACTGGAGTTAAAGCATGATTTTATTGATCTGAATTTCTTATACCTATCATGGGAATAAATTATTTAAATTTCTTTAATAATTCATTCATCTTTCAGATAAATCTTGAATCAAGTGGATTGATGCCAATGGAAGTTCCTTCATATATAGATGATTGTGAAGCTGTTGCTAATGGGTTTGGGTTAACTGGCTCTGAAAGAGATTTTGAACCTGGTGATCGAATGGGTGCTGCAATTGTAGCAGAACAGTTACAACTAGCTAAAGGAGATTCTAATGGAATTCCCCTCGGTCAAAGGCTAATATCTGCTTTGATTTCGGAGGAGTGTAGCAGTGAAAGTGAAGATATCATGTTTGATGCATGTGATACTGAATCTGAGGCAGACGGAGACTTGGATCACCATTCTCCATCTAATTCTCATCTTGCTTGTCACTCTCCTTATAACGGTTATAGGATAACTAGGAAGTCAGGACATGATGAGACTGAAAGTGATATAGTAGATATCCCATCAACTAGCTTAAATTCAAGCCAGAACATGCCTACCTTGATCTGTTTAGAGTTGCAATATGCCACCTTGGGTATGAATGAAAAGCTTCTCTTGGAGCTTCAAAGTATTCGAATTTCCCCAGAATCAGTGCCTGAAATGTTGCAAACAGATGATGAAGGAATTTGTGAGGATATCACTTGGTTAGAGGAGCATTGCCAAGGACAGATCTCCAACAGGAAATGCCTGCTAGATGGATTATTGAAATCAGCTTCAGTGACAAAAGAACTTCAAGAAAAGGATTTTGAACAAAATGCTCTTGACAAACTTGTCATGATGGCTTATGAGAAATACATGGTAACCTTCTCATTGTTCAGTATCACTTTTTGCATATAATCAGGTTTACAGTTTTGGAATAAATTTTTTGCATTCTAGTCAACTATTTCCAAGAGCAAGAGTTGTGTTACATTGTTACCATAACATAGTTGAAAAGGCTGGAGATCTTTATACAACAGTACTGGACAGGACAGTATTTATAGAGTTGAGCCATGGTCTATAAATCTGATTATCCAGGTATAAAAATGGAGGAAGTAGGAAGGACAGACATCAACAAGTGTATAGGACCATGTTCTGTTGTATAGTTGTGTGTGTAGCCTTAAATGCAGGTGCTAGAATTTATCATACACATAATAGTTTGTGATCTAGATTTCCTAATAAGACTTGGATGGGATGTTGAGGTAACAGCAGCATGAAAACTTACCATACAACTGGAAATGTCATACCCTGCCTTTTTAATTCAGACTTGTCATATCTTTGACCTATTCTTATTTTAGTGTTCACTTTTATCAGAGAAACCAAACTCCATGCCCTACCTTATTATCTTGCACGAAATAATTTGAATTGTCTAGGAAGAGAAGTTAAATAAAAGCTTCCCTTAACTTAAGGAATTCCTAGGGTTCCATGTTCTTAAAGAAAAATGAAACAACGATGAGCTTGGTGGATTTCTTTCAGATCTTTCTTAGCTTAGGAATTGAAAGTAACTAATTTAACCTAGATCAATCATCAAAACAACCCAAATCAATATTCTAACAAAGATCCCAAATGAGAGTTCATGAAAAAAGGAGGATCTAGGATTCAAAACAACAAGGCTTCCATGGATTGAATGTAACCATTGTTAGATGTTGTAGGGAAAAGGGTTTCAAAGCACATGAGGAATGAAGAGGAAATGAGAGCTCTTCAAGGTTGAGGGGAGTATGAGAAGGTGGTTGGTCCTTTTTCCTATCTAAGCCCACTAACACTCAAAATACACCAAATCTCAGTCATTTAAAATTTTAAATAAACTGACATCTCAATTAACATAATAATGCACTCAAACATATATCTTGCAGAATAAAACAACAGATCATTGTCAAATAGAGGTGTTCAATGAATTTATTCAGCAAGAAAATTG
>Glyma01g35096.1 sequence type=CDS gene model=Glyma01g35096 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAATAAATTATTTAAATTTCTTTAATAATTCATTCATCTTTCAGATAAATCTTGAATCAAGTGGATTGATGCCAATGGAAGTTCCTTCATATATAGATGATTGTGAAGCTGTTGCTAATGGGTTTGGGTTAACTGGCTCTGAAAGAGATTTTGAACCTGGTGATCGAATGGGTGCTGCAATTGTAGCAGAACAGTTACAACTAGCTAAAGGAGATTCTAATGGAATTCCCCTCGGTCAAAGGCTAATATCTGCTTTGATTTCGGAGGAGTGTAGCAGTGAAAGTGAAGATATCATGTTTGATGCATGTGATACTGAATCTGAGGCAGACGGAGACTTGGATCACCATTCTCCATCTAATTCTCATCTTGCTTGTCACTCTCCTTATAACGGTTATAGGATAACTAGGAAGTCAGGACATGATGAGACTGAAAGTGATATAGTAGATATCCCATCAACTAGCTTAAATTCAAGCCAGAACATGCCTACCTTGATCTGTTTAGAGTTGCAATATGCCACCTTGGGTATGAATGAAAAGCTTCTCTTGGAGCTTCAAAGTATTCGAATTTCCCCAGAATCAGTGCCTGAAATGTTGCAAACAGATGATGAAGGAATTTGTGAGGATATCACTTGGTTAGAGGAGCATTGCCAAGGACAGATCTCCAACAGGAAATGCCTGCTAGATGGATTATTGAAATCAGCTTCAGTGACAAAAGAACTTCAAGAAAAGGATTTTGAACAAAATGCTCTTGACAAACTTGTCATGATGGCTTATGAGAAATACATGGTAACCTTCTCATTGTTCAGTATCACTTTTTGCATATAA >Glyma01g35096.2 sequence type=CDS gene model=Glyma01g35096 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAATAAATTATTTAAATTTCTTTAATAATTCATTCATCTTTCAGATAAATCTTGAATCAAGTGGATTGATGCCAATGGAAGTTCCTTCATATATAGATGATTGTGAAGCTGTTGCTAATGGGTTTGGGTTAACTGGCTCTGAAAGAGATTTTGAACCTGGTGATCGAATGGGTGCTGCAATTGTAGCAGAACAGTTACAACTAGCTAAAGGAGATTCTAATGGAATTCCCCTCGGTCAAAGGCTAATATCTGCTTTGATTTCGGAGGAGTGTAGCAGTGAAAGTGAAGATATCATGTTTGATGCATGTGATACTGAATCTGAGGCAGACGGAGACTTGGATCACCATTCTCCATCTAATTCTCATCTTGCTTGTCACTCTCCTTATAACGGTTATAGGATAACTAGGAAGTCAGGACATGATGAGACTGAAAGTGATATAGTAGATATCCCATCAACTAGCTTAAATTCAAGCCAGAACATGCCTACCTTGATCTGTTTAGAGTTGCAATATGCCACCTTGGGTATGAATGAAAAGCTTCTCTTGGAGCTTCAAAGTATTCGAATTTCCCCAGAATCAGTGCCTGAAATGTTGCAAACAGATGATGAAGGAATTTGTGAGGATATCACTTGGTTAGAGGAGCATTGCCAAGGACAGATCTCCAACAGGAAATGCCTGCTAGATGGATTATTGAAATCAGCTTCAGTGACAAAAGAACTTCAAGAAAAGGATTTTGAACAAAATGCTCTTGACAAACTTGTCATGATGGCTTATGAGAAATACATGGTAACCTTCTCATTGTTCAGTATCACTTTTTGCATATAA
>Glyma01g35096.1 sequence type=predicted peptide gene model=Glyma01g35096 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGINYLNFFNNSFIFQINLESSGLMPMEVPSYIDDCEAVANGFGLTGSERDFEPGDRMGAAIVAEQLQLAKGDSNGIPLGQRLISALISEECSSESEDIMFDACDTESEADGDLDHHSPSNSHLACHSPYNGYRITRKSGHDETESDIVDIPSTSLNSSQNMPTLICLELQYATLGMNEKLLLELQSIRISPESVPEMLQTDDEGICEDITWLEEHCQGQISNRKCLLDGLLKSASVTKELQEKDFEQNALDKLVMMAYEKYMVTFSLFSITFCI* >Glyma01g35096.2 sequence type=predicted peptide gene model=Glyma01g35096 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGINYLNFFNNSFIFQINLESSGLMPMEVPSYIDDCEAVANGFGLTGSERDFEPGDRMGAAIVAEQLQLAKGDSNGIPLGQRLISALISEECSSESEDIMFDACDTESEADGDLDHHSPSNSHLACHSPYNGYRITRKSGHDETESDIVDIPSTSLNSSQNMPTLICLELQYATLGMNEKLLLELQSIRISPESVPEMLQTDDEGICEDITWLEEHCQGQISNRKCLLDGLLKSASVTKELQEKDFEQNALDKLVMMAYEKYMVTFSLFSITFCI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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