SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20020 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr2:8644464-8647090 FORWARD LENGTH=701 | SoyBase | E_val: 0 | ISS |
| GO:0000373 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Group II intron splicing | SoyBase | N/A | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006399 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| PF01985 | PFAM | CRS1 / YhbY (CRM) domain | JGI | ISS | |
| UniRef100_G7L853 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CRS2-associated factor n=1 Tax=Medicago truncatula RepID=G7L853_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023371AA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023371AA related cluster n=1 Tax=unknown RepID=UPI00023371AA | SoyBase | E_val: 0 | ISS |
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Glyma01g34980 not represented in the dataset |
Glyma01g34980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g147400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g34980.1 sequence type=CDS gene model=Glyma01g34980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGTGCTTCTGAAGGTGGCAATCCAATTACCCATATTTTCTCCACCCGTTTGCCCGAACCCGACTCGCGATCGTTGTTCCACGGAGCTCCGTTTCTCGCGCTGGAACAACGCCAACGCCGAGAAGTTCAACCGGCGCCGCCGAACTATCCAGGAAATCGAAGACGAAATCTGCCGCACTCGCCGCTTCACGGCCGCCGACAACATCACCAACACCGCTTTCGCCGCCGATTCCGCCGCAGCCGCCGAAACGTTCAAATCCCTCGGAACTCCCTCCGCCCCGTCACAACCTTCAATTCCGGGGAAGAAATCGAAGTACTCCAAGCCGCCGCCGAAGCCGAAACCCTTACTCGATTCGCACCCCGTGGTTTCGCGAGCCGCGAGCCTCGAATTTCGGCCGGGACCGGAGAACGTCAGAATCGGCGACGACGGAGTTTCCTACGTCGTCGACGGCGCGCCGTTCGAGTTTAGGTTCAGTTACACTGAGACTCCGAATGCGAAGCCGGTGAAATTGCGCGAGCCGCCATTCGCGCCGTTCGGACCGGCCTCCTTGCCGCGGCCATGGACGGGGCGGAACCCGGTGCCCCCGAGCAAGACGACGGTGAAGGACTTCCACGCGCTGGCTCTGCCGCCGCCGGATGAGGAAGAGGTTCAACCGGTTCGGTTGGCCGGTCCGGTTTGGGAGTCGAGAGATGAGGTATTGGGAGAACCGTTGACTAAGGACGAAATCAATCGCTTGATTAAAGCCACAGAGAAATCTTCGCGCCAGCTTAACATTGGCAGGGATGGTTTGACACATAACATGTTGGAAAATATACATACTTATTGGATGCGGCGTAGTGCGTGCAAGATAAAGTGCAGAGGAGTGTGTACTGTGGATATGGATAATGTGTGCCAGCAGTTAGAGGAAAGGACTGGAGGAAAAATCATTTACAGACAGGCTGGCACAGTGTACCTTTTCCGGGGCAAAAACTACAACTATGAAACTCGTCCACGATTTCCTTTCATGCGGTGGAAACCGGTGTCTCCAGTATATCCTAGGCTAATTAAACGAGTTCCAGAAGGTCTAACACTTGAAAAAGCAACTGAAATGCGTCAAAAGGGAAGGGACTTAATGCCCATATGCAAGCTAGGAAAAAATGGTGTTTACTGGGACCTTGTGACTAATATCAGAGAGGCATTTGAAGAGTGTGAGCTTGTGCGAATAAATTGCCAGGAACTAAATACAAGTGACTATCGAAGGATTGGAGCAAAACTAAAGGATCTTGTGCCATGCGCACTGCTTTCATTTGAAAATGACCACATACTTATGTGGAGGGGACAAAATTGGAGGCCCTCTTTACCAGATCCCAGAGATGATGACAAGGAAGCCAATAAAATTAATGTTGACAATGGAAATTCCAATAAACTGCCTTCAGATGCCCAAGAATTGTCAGCATTGTGTCTACAGAATAATCCAGTAGAGAATCTAAGCAATGAACCTCTTGACATAAGCATTTTATCTAATTCAGATGATGTGAGTTTGTACAAGGCTGTGTCTTGTCCCACAGAAAATAGCAACCAACTGGTGTCTGTGGTTACTGATGCTGCTTCACTTTCTATGAAATCCTGTGAAGCTGAAACTACAGAAGATGCCATGGTCGCTTCTTGCGAGCCACAAATGTTGCCTGGAACTAATAACAATTCTGTGAGTAACATAGTAGATCCTTATTCTGACAAGTTTCCAGGAGCAGCAGATGTTAGTGAGACCTCAAGATCTGCACTCTGCACGGAAGGAATTTTATCACTGTTGGAGCAAGCTGTTGAGAAAGGCAGTGCACTAGTTTTAGACGATGAATTTTTGGATGATGACCTCCTTTATCAAACCACAGTGGCTTTTGCTAAATCAACTCCACCCGAGCCTGTTTATAAGCTACCTAAACAGGTTGTCATTGTAAAAAGTGAGAGGCAAGAAGGTTTAACGCTGGAGACAGAAGAAATTACCAGTGTTACAAGGATAGGTGAAAAAATGAATAAGAGTTCTAAAATTAGAAGAAAAGAATATGGTAGGGGATCTCTGAATGTATTAGTACCACATAGAACGATAAACGTAGATAAACTTGCAATTCTGAAATGA
>Glyma01g34980.1 sequence type=predicted peptide gene model=Glyma01g34980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVLLKVAIQLPIFSPPVCPNPTRDRCSTELRFSRWNNANAEKFNRRRRTIQEIEDEICRTRRFTAADNITNTAFAADSAAAAETFKSLGTPSAPSQPSIPGKKSKYSKPPPKPKPLLDSHPVVSRAASLEFRPGPENVRIGDDGVSYVVDGAPFEFRFSYTETPNAKPVKLREPPFAPFGPASLPRPWTGRNPVPPSKTTVKDFHALALPPPDEEEVQPVRLAGPVWESRDEVLGEPLTKDEINRLIKATEKSSRQLNIGRDGLTHNMLENIHTYWMRRSACKIKCRGVCTVDMDNVCQQLEERTGGKIIYRQAGTVYLFRGKNYNYETRPRFPFMRWKPVSPVYPRLIKRVPEGLTLEKATEMRQKGRDLMPICKLGKNGVYWDLVTNIREAFEECELVRINCQELNTSDYRRIGAKLKDLVPCALLSFENDHILMWRGQNWRPSLPDPRDDDKEANKINVDNGNSNKLPSDAQELSALCLQNNPVENLSNEPLDISILSNSDDVSLYKAVSCPTENSNQLVSVVTDAASLSMKSCEAETTEDAMVASCEPQMLPGTNNNSVSNIVDPYSDKFPGAADVSETSRSALCTEGILSLLEQAVEKGSALVLDDEFLDDDLLYQTTVAFAKSTPPEPVYKLPKQVVIVKSERQEGLTLETEEITSVTRIGEKMNKSSKIRRKEYGRGSLNVLVPHRTINVDKLAILK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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