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Report for Sequence Feature Glyma01g34960

Feature Type:gene_model
Chromosome:Gm01
Start:47484621
stop:47488243
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g34960
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04610AT Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:1325612-1326916 REVERSE LENGTH=434 SoyBaseE_val: 6.00E-135ISS
GO:0015824GO-bp Annotation by Michelle Graham. GO Biological Process: proline transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
KOG2352 KOG Predicted spermine/spermidine synthase JGI ISS
PTHR12176Panther UNCHARACTERIZED JGI ISS
PTHR12176:SF9Panther gb def: ebip6594 [anopheles gambiae str. pest] JGI ISS
UniRef100_F0WW71UniRef Annotation by Michelle Graham. Most informative UniRef hit: Methyltransferase putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WW71_9STRA SoyBaseE_val: 8.00E-22ISS
UniRef100_I1J813UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J813_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g34960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g34960 not represented in the dataset
Glyma01g34960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g34960 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g147000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g34960
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma01g34960
>Glyma01g34960.3   sequence type=transcript   gene model=Glyma01g34960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAACTATAAATTTCAAAAAAGTTTAATTACTAAAAAGTTTTAATTAACCCTTCATATTTATAGGTGTGATTGTTCTGCAGTCACCAAGCATAAAAAAGTCGCAACTTCAGTTGCCACAAAGTTAAGTTAACCGTACAAACAGGTCGGGCAAAATACAACACCTTATTCAAGAGCAGCAAAACAAAGTGTGATGGCCCTGGATGCATCAACCTTCGAAACCATAACCCCTTCACGCTTCATCGCCTTCACAGTACCTCATCCAACATGTTCCGATTCCACTCTCCGAGTCGCCGTGCTCGACTCGCCGCTCCAACCCACTGACTCACCCCGAGTCGGCGCCATGTTGGTCCCCGAAGGCCGTGAAACCGATTGGATCTTCTCCACCGAATCGGGCCATCTCCAACTCCTCTTCAGCTCCCCTGGAATTTCACGTTTGATTCTCATAGGAACCCTCTTCAAAGAAGGTACTTTAACTCTTCTTCAATCACGTGCTTATCACCGTTCCTTGGAGTGTTCATTGCAGCATCAGGGTTTTGAGGTTTGGTCAAAGCCTCTTCTTTTGGCTTTGTCTCCTAAATCTTTGTTCAAAAGGGGCATTCCTGAGATACCCCTTTTGAGTTATGAGGATAGTTTGGTTTCTAGTGTGGTGGTTCATGAATGTGTTGGGTGTCATGTTGGTGAAATGTTGGTTGAGGATGTTGAAATTGAAAATGAGAGTGATCATGGGAGGGAGTTTAGGAGGAGGTTGAGGTTTAAGAGAATGCCTAATTTGATTCAAACTGAAATTTGTATTATTCCTGAGAGAGATTGTGATGGTGTGTGCATTGGTGGTGATGTGGGGTTTGTGCCTGATCTTAAGGTTTTGGTGCACCCTTACTTGGGGCCTATGGTGGCTGGTCTTGTGTTGAATAGTGAATATGTGGAGGGGCGGATTCGGATGGGGTTTAGGCCGAAGGCTTTGTGCCTTGGGGTTGGAGGTGGGGCTTTGATGACCTTTTTGAGAAATCAATTGGGTTTTGAGGTCATGGGTGTGGATAGTGATAGGGAGGTTTTGAGGGTGGCAAGGAAGTATTTTGGATTGGAAGAATGTGAGTTTGTCCGTGTTGTTGTTGGGGATGCCTTTGAATCGATGAACAAGCTTGTGTGTCGTGGAAAATTGAATGGTCGGAGGAGTTCTTTTGATGATTGTGAGGTTAATGGTTTTGGTGGTCACTTAGTGGTGGAGGATGAGGTCAACTGTAAATTTGACGTCGTTATGGTTGATTTAGATTCGAGCGACGTGAGGAACGGTGTAAGATCTCCGCCGTTGGAATTCATTAGAAAGGATGTTCTTCTTGCTGCTAAATTAGTTCTTTGTGAGTTTGGGATTCTTGCCATTAATGTCATTCCTCCTAGCAGGTCCTTCTACGACAACTTGGTGAGTCATTTTCAGGAAGTTTTTCATGAGCTGTACAAGATAGATGTAGGGAATGGTGAAAATTTTGTTCTTATTGCCACAGCTTCACCTCTGGTGTTTTCAGTTGAGGATTGTGGTAATTCTTTTCTTATGCGACTGAAATCAGTTATTCCGGAAGCATTCATAAATTCCATAACAAAGATATAATGTTTCATTTCTTGAGACAAGTGTAGTGATTTTGAAAGATCGTTTGCTTCCAAATAGATGATGTGTCGGTAATTTTGATACTATGATCCAAAGTGGAGTGTTTCTTTCATGCATGGTGCATCTTTGCCCGTGAAGAGAGTCATCTTTAAGACTACTGAGCAAACACTGAAATCACATTCATATCAGCGGCTTTGCATCTTGCTCTGGATCCAATTGCTTTCAGTAAGCTTATGCCATGTCACTCTTTGTTGGTATTGAGGAGCACATCATCAATGGAGAAGCAAGCATCTGAGGGTTTCCACTGAAGATTTCCAAAATGGTTTCAAGAGTAGGAGGAATGAATAGGCGCACCTGGTAAGGTGGCTCCAGCGTCCACAATACAAAATTGTTGCCAGACACATATTCAGAAGAATCATGAATTAAATAACGAGCTAGGGATGTTAATGCTGGATCAGAAGTGTCATATTTTCTCAAGGGTACTGTTTTCATGGCCACATCATTCAACCAATGTTTTTGCATTAGATTTGCAGTGATTTCAGATTTGAAAAGTAGAGGTGATATGGAATTCACTCTGATTTTGTGTGTCCCCATTTCTAATGCCATGATCTGTCAAATAACATTAGTGTCAGAAAATAAATGATATCAATATTGGCGCCTCTATTTAATCATTGTGAACAATGAATGGGTTAGTGAACTCTAGCAAACATGTAATTTTGTGAATATCAGATGAGAATATGAAATTAGAGCACAGAGAGCCATAAGCCAATCTAGATAGGAAATTTGATAATCCTAGATGAAAAGCCAATAGAAAAAATAGACATTCGTAGCGAAAATTTTCATATGTGGTG
Coding sequences of Glyma01g34960
>Glyma01g34960.2   sequence type=CDS   gene model=Glyma01g34960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCTGGATGCATCAACCTTCGAAACCATAACCCCTTCACGCTTCATCGCCTTCACAGTACCTCATCCAACATGTTCCGATTCCACTCTCCGAGTCGCCGTGCTCGACTCGCCGCTCCAACCCACTGACTCACCCCGAGTCGGCGCCATGTTGGTCCCCGAAGGCCGTGAAACCGATTGGATCTTCTCCACCGAATCGGGCCATCTCCAACTCCTCTTCAGCTCCCCTGGAATTTCACGTTTGATTCTCATAGGAACCCTCTTCAAAGAAGGTACTTTAACTCTTCTTCAATCACGTGCTTATCACCGTTCCTTGGAGTGTTCATTGCAGCATCAGGGTTTTGAGGTTTGGTCAAAGCCTCTTCTTTTGGCTTTGTCTCCTAAATCTTTGTTCAAAAGGGGCATTCCTGAGATACCCCTTTTGAGTTATGAGGATAGTTTGGTTTCTAGTGTGGTGGTTCATGAATGTGTTGGGTGTCATGTTGGTGAAATGTTGGTTGAGGATGTTGAAATTGAAAATGAGAGTGATCATGGGAGGGAGTTTAGGAGGAGGTTGAGGTTTAAGAGAATGCCTAATTTGATTCAAACTGAAATTTGTATTATTCCTGAGAGAGATTGTGATGGTGTGTGCATTGGTGGTGATGTGGGGTTTGTGCCTGATCTTAAGGTTTTGGTGCACCCTTACTTGGGGCCTATGGTGGCTGGTCTTGTGTTGAATAGTGAATATGTGGAGGGGCGGATTCGGATGGGGTTTAGGCCGAAGGCTTTGTGCCTTGGGGTTGGAGGTGGGGCTTTGATGACCTTTTTGAGAAATCAATTGGGTTTTGAGGTCATGGGTGTGGATAGTGATAGGGAGGTTTTGAGGGTGGCAAGGAAGTATTTTGGATTGGAAGAATGTGAGTTTGTCCGTGTTGTTGTTGGGGATGCCTTTGAATCGATGAACAAGCTTGTGTGTCGTGGAAAATTGAATGGTCGGAGGAGTTCTTTTGATGATTGTGAGGTTAATGGTTTTGGTGGTCACTTAGTGGTGGAGGATGAGGTCAACTGTAAATTTGACGTCGTTATGGTTGATTTAGATTCGAGCGACGTGAGGAACGGTGTAAGATCTCCGCCGTTGGAATTCATTAGAAAGGATGTTCTTCTTGCTGCTAAATTAGTTCTTTGTGAGTTTGGGATTCTTGCCATTAATGTCATTCCTCCTAGCAGGTCCTTCTACGACAACTTGGTGAGTCATTTTCAGGAAGTTTTTCATGAGCTGTACAAGATAGATGTAGGGAATGGTGAAAATTTTGTTCTTATTGCCACAGCTTCACCTCTGGTGTTTTCAGTTGAGGATTGTGGTAATTCTTTTCTTATGCGACTGAAATCAGTTATTCCGGAAGCATTCATAAATTCCATAACAAAGATATAA

>Glyma01g34960.3   sequence type=CDS   gene model=Glyma01g34960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCTGGATGCATCAACCTTCGAAACCATAACCCCTTCACGCTTCATCGCCTTCACAGTACCTCATCCAACATGTTCCGATTCCACTCTCCGAGTCGCCGTGCTCGACTCGCCGCTCCAACCCACTGACTCACCCCGAGTCGGCGCCATGTTGGTCCCCGAAGGCCGTGAAACCGATTGGATCTTCTCCACCGAATCGGGCCATCTCCAACTCCTCTTCAGCTCCCCTGGAATTTCACGTTTGATTCTCATAGGAACCCTCTTCAAAGAAGGTACTTTAACTCTTCTTCAATCACGTGCTTATCACCGTTCCTTGGAGTGTTCATTGCAGCATCAGGGTTTTGAGGTTTGGTCAAAGCCTCTTCTTTTGGCTTTGTCTCCTAAATCTTTGTTCAAAAGGGGCATTCCTGAGATACCCCTTTTGAGTTATGAGGATAGTTTGGTTTCTAGTGTGGTGGTTCATGAATGTGTTGGGTGTCATGTTGGTGAAATGTTGGTTGAGGATGTTGAAATTGAAAATGAGAGTGATCATGGGAGGGAGTTTAGGAGGAGGTTGAGGTTTAAGAGAATGCCTAATTTGATTCAAACTGAAATTTGTATTATTCCTGAGAGAGATTGTGATGGTGTGTGCATTGGTGGTGATGTGGGGTTTGTGCCTGATCTTAAGGTTTTGGTGCACCCTTACTTGGGGCCTATGGTGGCTGGTCTTGTGTTGAATAGTGAATATGTGGAGGGGCGGATTCGGATGGGGTTTAGGCCGAAGGCTTTGTGCCTTGGGGTTGGAGGTGGGGCTTTGATGACCTTTTTGAGAAATCAATTGGGTTTTGAGGTCATGGGTGTGGATAGTGATAGGGAGGTTTTGAGGGTGGCAAGGAAGTATTTTGGATTGGAAGAATGTGAGTTTGTCCGTGTTGTTGTTGGGGATGCCTTTGAATCGATGAACAAGCTTGTGTGTCGTGGAAAATTGAATGGTCGGAGGAGTTCTTTTGATGATTGTGAGGTTAATGGTTTTGGTGGTCACTTAGTGGTGGAGGATGAGGTCAACTGTAAATTTGACGTCGTTATGGTTGATTTAGATTCGAGCGACGTGAGGAACGGTGTAAGATCTCCGCCGTTGGAATTCATTAGAAAGGATGTTCTTCTTGCTGCTAAATTAGTTCTTTGTGAGTTTGGGATTCTTGCCATTAATGTCATTCCTCCTAGCAGGTCCTTCTACGACAACTTGGTGAGTCATTTTCAGGAAGTTTTTCATGAGCTGTACAAGATAGATGTAGGGAATGGTGAAAATTTTGTTCTTATTGCCACAGCTTCACCTCTGGTGTTTTCAGTTGAGGATTGTGGTAATTCTTTTCTTATGCGACTGAAATCAGTTATTCCGGAAGCATTCATAAATTCCATAACAAAGATATAA
Predicted protein sequences of Glyma01g34960
>Glyma01g34960.2   sequence type=predicted peptide   gene model=Glyma01g34960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALDASTFETITPSRFIAFTVPHPTCSDSTLRVAVLDSPLQPTDSPRVGAMLVPEGRETDWIFSTESGHLQLLFSSPGISRLILIGTLFKEGTLTLLQSRAYHRSLECSLQHQGFEVWSKPLLLALSPKSLFKRGIPEIPLLSYEDSLVSSVVVHECVGCHVGEMLVEDVEIENESDHGREFRRRLRFKRMPNLIQTEICIIPERDCDGVCIGGDVGFVPDLKVLVHPYLGPMVAGLVLNSEYVEGRIRMGFRPKALCLGVGGGALMTFLRNQLGFEVMGVDSDREVLRVARKYFGLEECEFVRVVVGDAFESMNKLVCRGKLNGRRSSFDDCEVNGFGGHLVVEDEVNCKFDVVMVDLDSSDVRNGVRSPPLEFIRKDVLLAAKLVLCEFGILAINVIPPSRSFYDNLVSHFQEVFHELYKIDVGNGENFVLIATASPLVFSVEDCGNSFLMRLKSVIPEAFINSITKI*

>Glyma01g34960.3   sequence type=predicted peptide   gene model=Glyma01g34960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALDASTFETITPSRFIAFTVPHPTCSDSTLRVAVLDSPLQPTDSPRVGAMLVPEGRETDWIFSTESGHLQLLFSSPGISRLILIGTLFKEGTLTLLQSRAYHRSLECSLQHQGFEVWSKPLLLALSPKSLFKRGIPEIPLLSYEDSLVSSVVVHECVGCHVGEMLVEDVEIENESDHGREFRRRLRFKRMPNLIQTEICIIPERDCDGVCIGGDVGFVPDLKVLVHPYLGPMVAGLVLNSEYVEGRIRMGFRPKALCLGVGGGALMTFLRNQLGFEVMGVDSDREVLRVARKYFGLEECEFVRVVVGDAFESMNKLVCRGKLNGRRSSFDDCEVNGFGGHLVVEDEVNCKFDVVMVDLDSSDVRNGVRSPPLEFIRKDVLLAAKLVLCEFGILAINVIPPSRSFYDNLVSHFQEVFHELYKIDVGNGENFVLIATASPLVFSVEDCGNSFLMRLKSVIPEAFINSITKI*






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